Wall clock time and date at job start Tue Mar 31 2020 11:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47393 * 2 1 4 4 N 1.46497 * 109.47235 * 120.00629 * 2 1 3 5 5 C 1.46497 * 119.99638 * 296.13893 * 4 2 1 6 6 C 1.50700 * 109.47353 * 82.74307 * 5 4 2 7 7 H 1.07997 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00120 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00235 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00147 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47097 * 89.99774 * 10 8 6 12 12 H 1.48496 * 109.47186 * 210.00419 * 10 8 6 13 13 H 1.48508 * 109.47010 * 329.99726 * 10 8 6 14 14 C 1.34772 * 120.00457 * 116.14086 * 4 2 1 15 15 O 1.21600 * 119.99677 * 4.29166 * 14 4 2 16 16 C 1.47504 * 120.00490 * 184.29620 * 14 4 2 17 17 C 1.40155 * 119.94659 * 48.70843 * 16 14 4 18 18 C 1.36207 * 120.49554 * 179.97438 * 17 16 14 19 19 C 1.40018 * 120.08440 * 359.97438 * 18 17 16 20 20 N 1.35567 * 133.26764 * 180.02562 * 19 18 17 21 21 C 1.30918 * 109.70865 * 179.97438 * 20 19 18 22 22 O 1.35206 * 125.00729 * 179.97438 * 21 20 19 23 23 N 1.36246 * 109.97820 * 0.02562 * 21 20 19 24 24 C 1.46499 * 126.39753 * 180.02562 * 23 21 20 25 25 C 1.38563 * 107.20647 * 359.97438 * 23 21 20 26 26 C 1.38221 * 133.89958 * 180.35779 * 25 23 21 27 27 H 1.09001 * 109.47464 * 59.99853 * 1 2 3 28 28 H 1.08998 * 109.47414 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47273 * 299.99611 * 1 2 3 30 30 H 1.09009 * 109.46743 * 239.99968 * 2 1 3 31 31 H 1.09002 * 109.46594 * 59.99973 * 3 2 1 32 32 H 1.08993 * 109.47128 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47331 * 300.00773 * 3 2 1 34 34 H 1.09005 * 109.47030 * 202.74003 * 5 4 2 35 35 H 1.08998 * 109.47317 * 322.74188 * 5 4 2 36 36 H 0.97004 * 120.00365 * 180.02562 * 9 8 6 37 37 H 1.08001 * 119.75137 * 359.97438 * 17 16 14 38 38 H 1.08005 * 119.95891 * 180.02562 * 18 17 16 39 39 H 0.96703 * 113.99943 * 270.04039 * 22 21 20 40 40 H 1.08997 * 109.47477 * 269.97165 * 24 23 21 41 41 H 1.09004 * 109.47069 * 29.97610 * 24 23 21 42 42 H 1.09006 * 109.47066 * 149.97401 * 24 23 21 43 43 H 1.07994 * 120.20455 * 359.90625 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7355 -0.1429 2.5250 6 6 0.3565 -0.5672 2.9602 7 1 -0.2488 -1.1830 2.3116 8 6 -0.1322 -0.1693 4.1865 9 7 0.6047 0.5810 4.9761 10 14 -1.8419 -0.6946 4.7257 11 1 -1.7558 -1.9843 5.4567 12 1 -2.4201 0.3424 5.6175 13 1 -2.7088 -0.8595 3.5313 14 6 2.7278 -1.8301 1.0739 15 8 3.0295 -2.2430 -0.0293 16 6 3.1382 -2.5762 2.2783 17 6 2.1989 -2.8613 3.2787 18 6 2.5655 -3.5499 4.3951 19 6 3.8888 -3.9800 4.5516 20 7 4.5335 -4.6669 5.5264 21 6 5.7913 -4.8231 5.1985 22 8 6.7149 -5.4639 5.9497 23 7 6.0325 -4.2437 3.9892 24 6 7.3159 -4.2064 3.2836 25 6 4.8371 -3.6972 3.5508 26 6 4.4594 -3.0028 2.4169 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 2.4721 -0.5166 3.2363 35 1 1.7859 0.9453 2.4877 36 1 0.2609 0.8606 5.8390 37 1 1.1766 -2.5325 3.1633 38 1 1.8344 -3.7653 5.1604 39 1 7.1827 -4.8901 6.5719 40 1 7.8667 -3.3132 3.5781 41 1 7.8970 -5.0925 3.5394 42 1 7.1388 -4.1861 2.2082 43 1 5.1835 -2.7882 1.6449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533558121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:53 Heat of formation + Delta-G solvation = 8.330517 kcal Electronic energy + Delta-G solvation = -27166.835494 eV Core-core repulsion = 23406.736669 eV Total energy + Delta-G solvation = -3760.098825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.98591 -39.52997 -37.88793 -36.15413 -35.75435 -34.16557 -32.95824 -31.42725 -30.22505 -28.57864 -27.38603 -26.95244 -26.62995 -23.65194 -22.97637 -22.36608 -20.86223 -20.64780 -18.75136 -18.23853 -17.36883 -16.92692 -16.62373 -16.15777 -15.78517 -15.29303 -14.71936 -14.44436 -14.28139 -13.79914 -13.64714 -13.57301 -13.21699 -13.10434 -12.79671 -12.65209 -12.40187 -12.34970 -11.85845 -11.79245 -11.52873 -11.46751 -11.06367 -11.02051 -10.90494 -10.76014 -10.63623 -10.30463 -10.23613 -9.94478 -9.78852 -9.58487 -9.17605 -8.57284 -7.95574 -7.82588 -7.68116 -6.20152 -4.25609 0.97299 1.89624 2.27272 2.63160 3.22400 3.30986 3.32385 3.45023 3.67957 3.86113 4.27967 4.34291 4.61085 4.64837 4.98221 5.11170 5.17607 5.26092 5.29349 5.51813 5.62110 5.69343 5.73963 5.75575 5.86010 6.09326 6.15542 6.21403 6.39242 6.44312 6.47343 6.49429 6.69463 6.74339 6.81497 6.84628 6.98941 7.08362 7.24956 7.32603 7.52252 7.55762 7.72851 7.93757 8.03478 8.31686 8.75568 8.94315 9.39023 10.86023 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.004920 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.729629 B = 5689.900476 C = 7304.661058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 C -0.158 4.158 4 N -0.581 5.581 5 C 0.230 3.770 6 C -0.537 4.537 7 H 0.068 0.932 8 C 0.070 3.930 9 N -0.882 5.882 10 Si 0.888 3.112 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.560 3.440 15 O -0.572 6.572 16 C -0.091 4.091 17 C -0.068 4.068 18 C -0.074 4.074 19 C 0.073 3.927 20 N -0.487 5.487 21 C 0.438 3.562 22 O -0.445 6.445 23 N -0.496 5.496 24 C 0.079 3.921 25 C 0.039 3.961 26 C -0.068 4.068 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.266 0.734 37 H 0.172 0.828 38 H 0.132 0.868 39 H 0.405 0.595 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 -4.054 -2.133 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 C -0.216 4.216 4 N -0.311 5.311 5 C 0.111 3.889 6 C -0.575 4.575 7 H 0.086 0.914 8 C -0.134 4.134 9 N -0.519 5.519 10 Si 0.715 3.285 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.348 3.652 15 O -0.454 6.454 16 C -0.095 4.095 17 C -0.088 4.088 18 C -0.094 4.094 19 C -0.045 4.045 20 N -0.218 5.218 21 C 0.136 3.864 22 O -0.246 6.246 23 N -0.199 5.199 24 C -0.064 4.064 25 C -0.067 4.067 26 C -0.090 4.090 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.189 0.811 38 H 0.150 0.850 39 H 0.263 0.737 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.071 -4.957 -2.076 11.415 hybrid contribution -0.072 0.457 0.250 0.526 sum 9.998 -4.499 -1.827 11.115 Atomic orbital electron populations 1.22204 0.94845 1.02120 1.02361 1.20851 0.94557 0.92515 0.88621 1.22105 1.00756 0.96461 1.02268 1.48242 1.50655 1.22821 1.09350 1.19568 0.96974 0.95294 0.77103 1.21458 1.00652 1.33099 1.02336 0.91418 1.24912 0.97433 0.94729 0.96319 1.69915 1.36955 1.34747 1.10325 0.86649 0.84357 0.78648 0.78859 1.20205 1.21166 1.19669 1.18141 0.78192 0.80883 0.87975 1.90688 1.58186 1.69195 1.27305 1.19631 0.93298 1.00640 0.95958 1.21757 1.02696 0.93702 0.90665 1.19959 0.92127 0.98698 0.98617 1.18957 0.94736 0.99970 0.90857 1.70570 1.02327 1.20864 1.27996 1.20312 0.87899 0.94478 0.83711 1.84759 1.51645 1.35122 1.53056 1.45431 1.09203 1.46707 1.18574 1.21937 0.82720 1.03423 0.98310 1.18364 0.85753 1.03772 0.98807 1.19712 0.95739 0.98773 0.94777 0.93450 0.92999 0.89700 0.89728 0.91342 0.93117 0.92368 0.93818 0.94377 0.92462 0.81060 0.85007 0.73726 0.90866 0.89450 0.89556 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.18 37.16 0.30 -2.43 16 2 C 0.14 2.50 3.25 -67.94 -0.22 2.28 16 3 C -0.16 -2.51 9.06 37.15 0.34 -2.17 16 4 N -0.58 -11.87 2.43 -168.71 -0.41 -12.28 16 5 C 0.23 5.16 4.37 -5.20 -0.02 5.13 16 6 C -0.54 -12.60 4.66 -34.44 -0.16 -12.76 16 7 H 0.07 1.60 6.83 -52.49 -0.36 1.24 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.88 -23.06 13.29 55.43 0.74 -22.33 16 10 Si 0.89 19.43 29.54 -169.99 -5.02 14.40 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 C 0.56 11.77 7.19 -12.49 -0.09 11.68 16 15 O -0.57 -12.93 16.35 5.28 0.09 -12.84 16 16 C -0.09 -1.80 4.71 -104.92 -0.49 -2.29 16 17 C -0.07 -1.36 7.64 -39.59 -0.30 -1.67 16 18 C -0.07 -1.43 10.03 -39.65 -0.40 -1.83 16 19 C 0.07 1.39 7.22 -84.61 -0.61 0.78 16 20 N -0.49 -8.81 11.29 -12.18 -0.14 -8.94 16 21 C 0.44 6.45 8.98 -88.92 -0.80 5.66 16 22 O -0.44 -4.77 13.51 -17.31 -0.23 -5.00 16 23 N -0.50 -6.92 3.23 -123.40 -0.40 -7.32 16 24 C 0.08 0.70 11.12 59.85 0.67 1.37 16 25 C 0.04 0.68 6.87 -83.88 -0.58 0.10 16 26 C -0.07 -1.21 9.70 -39.11 -0.38 -1.59 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 29 H 0.08 1.63 6.48 -51.93 -0.34 1.29 16 30 H 0.08 1.57 6.91 -51.92 -0.36 1.21 16 31 H 0.07 1.17 6.63 -51.93 -0.34 0.82 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.04 1.05 5.98 -51.93 -0.31 0.74 16 35 H 0.04 0.90 6.31 -51.93 -0.33 0.57 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.17 3.66 4.96 -52.49 -0.26 3.40 16 38 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 39 H 0.41 2.13 9.06 45.56 0.41 2.54 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.61 8.13 -51.93 -0.42 0.19 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -30.65 353.83 -7.71 -38.35 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.82 Total: 6.73 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.84 Total: 3.89 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.21 Total: -50.88 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.15 Total: -17.84 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.65 -7.71 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533558121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.683 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds