Wall clock time and date at job start Tue Mar 31 2020 11:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47393 * 2 1 4 4 N 1.46497 * 109.47235 * 120.00629 * 2 1 3 5 5 C 1.46497 * 119.99638 * 296.13893 * 4 2 1 6 6 C 1.50700 * 109.47353 * 82.74307 * 5 4 2 7 7 H 1.07997 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00120 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00235 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00147 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47097 * 89.99774 * 10 8 6 12 12 H 1.48496 * 109.47186 * 210.00419 * 10 8 6 13 13 H 1.48508 * 109.47010 * 329.99726 * 10 8 6 14 14 C 1.34772 * 120.00457 * 116.14086 * 4 2 1 15 15 O 1.21600 * 119.99677 * 4.29166 * 14 4 2 16 16 C 1.47504 * 120.00490 * 184.29620 * 14 4 2 17 17 C 1.40155 * 119.94659 * 48.70843 * 16 14 4 18 18 C 1.36207 * 120.49554 * 179.97438 * 17 16 14 19 19 C 1.40018 * 120.08440 * 359.97438 * 18 17 16 20 20 N 1.35567 * 133.26764 * 180.02562 * 19 18 17 21 21 C 1.30918 * 109.70865 * 179.97438 * 20 19 18 22 22 O 1.35206 * 125.00729 * 179.97438 * 21 20 19 23 23 N 1.36246 * 109.97820 * 0.02562 * 21 20 19 24 24 C 1.46499 * 126.39753 * 180.02562 * 23 21 20 25 25 C 1.38563 * 107.20647 * 359.97438 * 23 21 20 26 26 C 1.38221 * 133.89958 * 180.35779 * 25 23 21 27 27 H 1.09001 * 109.47464 * 59.99853 * 1 2 3 28 28 H 1.08998 * 109.47414 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47273 * 299.99611 * 1 2 3 30 30 H 1.09009 * 109.46743 * 239.99968 * 2 1 3 31 31 H 1.09002 * 109.46594 * 59.99973 * 3 2 1 32 32 H 1.08993 * 109.47128 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47331 * 300.00773 * 3 2 1 34 34 H 1.09005 * 109.47030 * 202.74003 * 5 4 2 35 35 H 1.08998 * 109.47317 * 322.74188 * 5 4 2 36 36 H 0.97004 * 120.00365 * 180.02562 * 9 8 6 37 37 H 1.08001 * 119.75137 * 359.97438 * 17 16 14 38 38 H 1.08005 * 119.95891 * 180.02562 * 18 17 16 39 39 H 0.96703 * 113.99943 * 270.04039 * 22 21 20 40 40 H 1.08997 * 109.47477 * 269.97165 * 24 23 21 41 41 H 1.09004 * 109.47069 * 29.97610 * 24 23 21 42 42 H 1.09006 * 109.47066 * 149.97401 * 24 23 21 43 43 H 1.07994 * 120.20455 * 359.90625 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7355 -0.1429 2.5250 6 6 0.3565 -0.5672 2.9602 7 1 -0.2488 -1.1830 2.3116 8 6 -0.1322 -0.1693 4.1865 9 7 0.6047 0.5810 4.9761 10 14 -1.8419 -0.6946 4.7257 11 1 -1.7558 -1.9843 5.4567 12 1 -2.4201 0.3424 5.6175 13 1 -2.7088 -0.8595 3.5313 14 6 2.7278 -1.8301 1.0739 15 8 3.0295 -2.2430 -0.0293 16 6 3.1382 -2.5762 2.2783 17 6 2.1989 -2.8613 3.2787 18 6 2.5655 -3.5499 4.3951 19 6 3.8888 -3.9800 4.5516 20 7 4.5335 -4.6669 5.5264 21 6 5.7913 -4.8231 5.1985 22 8 6.7149 -5.4639 5.9497 23 7 6.0325 -4.2437 3.9892 24 6 7.3159 -4.2064 3.2836 25 6 4.8371 -3.6972 3.5508 26 6 4.4594 -3.0028 2.4169 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 2.4721 -0.5166 3.2363 35 1 1.7859 0.9453 2.4877 36 1 0.2609 0.8606 5.8390 37 1 1.1766 -2.5325 3.1633 38 1 1.8344 -3.7653 5.1604 39 1 7.1827 -4.8901 6.5719 40 1 7.8667 -3.3132 3.5781 41 1 7.8970 -5.0925 3.5394 42 1 7.1388 -4.1861 2.2082 43 1 5.1835 -2.7882 1.6449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533558121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:52 Heat of formation + Delta-G solvation = -12.912800 kcal Electronic energy + Delta-G solvation = -27167.756674 eV Core-core repulsion = 23406.736669 eV Total energy + Delta-G solvation = -3761.020005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.23892 -41.11448 -39.01595 -37.52023 -37.28761 -35.33671 -34.76550 -33.01302 -31.58771 -29.97414 -29.19422 -28.00278 -27.92551 -25.08034 -24.76863 -23.71222 -22.26910 -21.88287 -20.12527 -19.41343 -18.89784 -18.50681 -18.08657 -17.46587 -17.33414 -16.65974 -16.37971 -15.83818 -15.52761 -15.18946 -15.03838 -14.97398 -14.65906 -14.23264 -14.16015 -14.08505 -13.80988 -13.53279 -13.31753 -13.30106 -12.95542 -12.86507 -12.67269 -12.60008 -12.46465 -12.21790 -12.18523 -11.94980 -11.58744 -11.45026 -11.34341 -11.07375 -10.82940 -10.47901 -9.46785 -9.31226 -9.12283 -8.11096 -6.19792 -0.37037 0.45444 1.16482 1.35528 1.46160 1.50808 1.56796 1.89498 2.26572 2.48202 2.65186 2.84686 3.19969 3.36753 3.69885 3.80372 3.94608 4.13110 4.23683 4.30603 4.33979 4.37593 4.47801 4.55007 4.64048 4.66486 4.75641 4.88329 4.97931 5.07072 5.14187 5.17258 5.22288 5.25374 5.37580 5.48159 5.51169 5.60182 5.69256 5.76762 5.83739 5.91741 6.15517 6.57861 6.59871 6.66789 6.89234 7.26516 7.48078 8.94885 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.004920 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.729629 B = 5689.900476 C = 7304.661058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.129 3.871 3 C -0.149 4.149 4 N -0.582 5.582 5 C 0.249 3.751 6 C -0.524 4.524 7 H 0.064 0.936 8 C 0.031 3.969 9 N -0.915 5.915 10 Si 0.939 3.061 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.267 1.267 14 C 0.559 3.441 15 O -0.591 6.591 16 C -0.118 4.118 17 C -0.074 4.074 18 C -0.088 4.088 19 C 0.061 3.939 20 N -0.530 5.530 21 C 0.462 3.538 22 O -0.436 6.436 23 N -0.488 5.488 24 C 0.068 3.932 25 C 0.034 3.966 26 C -0.053 4.053 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.152 0.848 38 H 0.131 0.869 39 H 0.433 0.567 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.979 -4.588 -2.638 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 C -0.207 4.207 4 N -0.311 5.311 5 C 0.128 3.872 6 C -0.562 4.562 7 H 0.082 0.918 8 C -0.170 4.170 9 N -0.554 5.554 10 Si 0.765 3.235 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.191 1.191 14 C 0.349 3.651 15 O -0.474 6.474 16 C -0.122 4.122 17 C -0.095 4.095 18 C -0.108 4.108 19 C -0.058 4.058 20 N -0.262 5.262 21 C 0.159 3.841 22 O -0.241 6.241 23 N -0.190 5.190 24 C -0.072 4.072 25 C -0.074 4.074 26 C -0.075 4.075 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.170 0.830 38 H 0.149 0.851 39 H 0.296 0.704 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.111 0.889 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.818 -5.482 -2.590 13.282 hybrid contribution -0.402 0.515 0.441 0.788 sum 11.415 -4.968 -2.149 12.634 Atomic orbital electron populations 1.22110 0.94222 1.01434 1.02929 1.21106 0.95098 0.93615 0.87514 1.22031 1.00734 0.94886 1.03027 1.48270 1.50560 1.22909 1.09354 1.19182 0.95989 0.94206 0.77776 1.21530 1.00789 1.31958 1.01958 0.91777 1.25462 1.00067 0.94918 0.96504 1.70008 1.38369 1.36347 1.10688 0.85840 0.81192 0.78026 0.78448 1.20213 1.21385 1.19114 1.18320 0.77884 0.80819 0.88122 1.90658 1.59075 1.69691 1.28022 1.19582 0.94432 1.02314 0.95892 1.21464 1.01869 0.94677 0.91443 1.19944 0.92971 0.99413 0.98477 1.19075 0.94871 1.00077 0.91766 1.70535 1.04112 1.22781 1.28748 1.20400 0.87750 0.92135 0.83853 1.84739 1.50732 1.35381 1.53268 1.45683 1.09711 1.45232 1.18366 1.22375 0.80612 1.05803 0.98391 1.18339 0.86935 1.03898 0.98208 1.19810 0.95119 0.97445 0.95102 0.90150 0.94265 0.91763 0.89793 0.92872 0.93086 0.89217 0.95609 0.95656 0.92673 0.83027 0.85133 0.70423 0.88610 0.86943 0.88899 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 8.18 71.98 0.59 -4.49 16 2 C 0.13 4.63 3.25 44.99 0.15 4.78 16 3 C -0.15 -4.57 9.06 71.98 0.65 -3.92 16 4 N -0.58 -24.17 2.43 -805.93 -1.96 -26.13 16 5 C 0.25 11.49 4.37 85.63 0.37 11.86 16 6 C -0.52 -25.21 4.66 25.60 0.12 -25.09 16 7 H 0.06 3.10 6.83 -2.91 -0.02 3.08 16 8 C 0.03 1.57 5.46 84.65 0.46 2.04 16 9 N -0.92 -49.02 13.29 21.44 0.28 -48.74 16 10 Si 0.94 40.49 29.54 68.60 2.03 42.52 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 14 C 0.56 23.85 7.19 86.69 0.62 24.47 16 15 O -0.59 -26.74 16.35 -4.03 -0.07 -26.80 16 16 C -0.12 -4.75 4.71 -20.06 -0.09 -4.85 16 17 C -0.07 -3.10 7.64 22.26 0.17 -2.93 16 18 C -0.09 -3.53 10.03 22.23 0.22 -3.31 16 19 C 0.06 2.32 7.22 39.61 0.29 2.61 16 20 N -0.53 -18.75 11.29 -306.25 -3.46 -22.21 16 21 C 0.46 12.47 8.98 179.75 1.61 14.09 16 22 O -0.44 -7.77 13.51 -84.87 -1.15 -8.92 16 23 N -0.49 -12.34 3.23 -655.33 -2.11 -14.45 16 24 C 0.07 0.96 11.12 127.77 1.42 2.38 16 25 C 0.03 1.14 6.87 38.69 0.27 1.40 16 26 C -0.05 -1.86 9.70 22.58 0.22 -1.64 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.04 1.40 8.03 -2.39 -0.02 1.39 16 29 H 0.06 2.46 6.48 -2.39 -0.02 2.44 16 30 H 0.08 3.05 6.91 -2.38 -0.02 3.03 16 31 H 0.05 1.80 6.63 -2.39 -0.02 1.78 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.03 1.30 5.98 -2.38 -0.01 1.28 16 35 H 0.03 1.24 6.31 -2.39 -0.02 1.22 16 36 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 37 H 0.15 6.84 4.96 -2.91 -0.01 6.82 16 38 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 39 H 0.43 2.77 9.06 -74.06 -0.67 2.10 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 1.06 8.13 -2.38 -0.02 1.04 16 42 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -67.36 353.83 1.02 -66.34 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.39 Total: 20.99 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 7.07 Total: 17.40 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -7.25 Total: -111.53 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -1.21 Total: -35.72 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -67.36 1.02 -66.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533558121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.424 kcal (2) G-P(sol) polarization free energy of solvation -67.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds