Wall clock time and date at job start Tue Mar 31 2020 12:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.55506 * 2 1 4 4 C 1.54991 * 110.61911 * 237.11364 * 2 1 3 5 5 C 1.54814 * 102.09362 * 204.47444 * 4 2 1 6 6 H 1.08994 * 110.49026 * 262.07411 * 5 4 2 7 7 C 1.53004 * 110.48438 * 139.55967 * 5 4 2 8 8 N 1.46495 * 109.47143 * 66.45465 * 7 5 4 9 9 S 1.65599 * 119.99648 * 165.27235 * 8 7 5 10 10 O 1.42110 * 104.27597 * 180.79661 * 9 8 7 11 11 O 1.42098 * 104.28200 * 308.65315 * 9 8 7 12 12 C 1.81403 * 104.45003 * 64.72875 * 9 8 7 13 13 C 1.52997 * 109.47124 * 173.80420 * 12 9 8 14 14 C 1.50700 * 115.54884 * 65.19552 * 13 12 9 15 15 H 1.08004 * 120.00091 * 264.77971 * 14 13 12 16 16 C 1.37879 * 120.00026 * 84.78402 * 14 13 12 17 17 N 1.31516 * 119.99983 * 352.23228 * 16 14 13 18 18 Si 1.86802 * 120.00072 * 172.23252 * 16 14 13 19 19 H 1.48497 * 109.47048 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47087 * 120.00078 * 18 16 14 21 21 H 1.48503 * 109.46948 * 239.99695 * 18 16 14 22 22 C 1.53003 * 117.50167 * 279.52594 * 13 12 9 23 23 C 1.53002 * 117.50015 * 210.86444 * 13 12 9 24 24 C 1.54105 * 104.18539 * 20.88816 * 5 4 2 25 25 H 1.08997 * 109.87371 * 242.60259 * 24 5 4 26 26 C 1.52992 * 109.88080 * 121.45026 * 24 5 4 27 27 O 1.43743 * 107.29554 * 2.02325 * 24 5 4 28 28 H 1.08997 * 109.47077 * 182.88225 * 1 2 3 29 29 H 1.09006 * 109.47106 * 302.88387 * 1 2 3 30 30 H 1.08996 * 109.46792 * 62.87955 * 1 2 3 31 31 H 1.08999 * 110.90283 * 86.28435 * 4 2 1 32 32 H 1.08997 * 110.94132 * 322.69545 * 4 2 1 33 33 H 1.08999 * 109.46906 * 306.45484 * 7 5 4 34 34 H 1.08995 * 109.46818 * 186.46227 * 7 5 4 35 35 H 0.97002 * 120.00143 * 345.00135 * 8 7 5 36 36 H 1.08997 * 109.47169 * 293.80869 * 12 9 8 37 37 H 1.09005 * 109.46878 * 53.80995 * 12 9 8 38 38 H 0.97003 * 120.00122 * 185.02211 * 17 16 14 39 39 H 1.08997 * 117.49767 * 359.97438 * 22 13 12 40 40 H 1.08999 * 117.49842 * 145.02264 * 22 13 12 41 41 H 1.09001 * 117.49716 * 214.98342 * 23 13 12 42 42 H 1.09001 * 117.49794 * 359.97438 * 23 13 12 43 43 H 1.09004 * 109.47359 * 59.99633 * 26 24 5 44 44 H 1.09002 * 109.47507 * 179.97438 * 26 24 5 45 45 H 1.09002 * 109.47358 * 299.99732 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7877 -1.2182 5 6 3.4795 -1.2157 -0.7251 6 1 4.2409 -0.5330 -1.1022 7 6 3.7855 -2.6503 -1.1603 8 7 3.9002 -2.7039 -2.6198 9 16 4.5780 -4.0272 -3.3489 10 8 4.5378 -3.7219 -4.7363 11 8 5.8155 -4.2043 -2.6734 12 6 3.4419 -5.3879 -2.9635 13 6 3.8797 -6.6464 -3.7155 14 6 5.2137 -7.2164 -3.3073 15 1 6.1046 -6.9536 -3.8584 16 6 5.2968 -8.0734 -2.2304 17 7 4.2448 -8.2742 -1.4671 18 14 6.9036 -8.9492 -1.8556 19 1 7.9271 -8.5559 -2.8571 20 1 7.3685 -8.5706 -0.4971 21 1 6.6924 -10.4180 -1.9150 22 6 3.4823 -6.7635 -5.1883 23 6 2.7889 -7.6331 -4.1366 24 6 3.3839 -1.1267 0.8104 25 1 4.0853 -0.3800 1.1826 26 6 3.6934 -2.4904 1.4309 27 8 2.0384 -0.7369 1.1328 28 1 -0.3633 -1.0263 0.0517 29 1 -0.3633 0.5580 0.8630 30 1 -0.3633 0.4685 -0.9147 31 1 2.1510 -0.1446 -2.0951 32 1 1.4551 -1.6585 -1.4288 33 1 2.9798 -3.3083 -0.8348 34 1 4.7236 -2.9743 -0.7099 35 1 3.5755 -1.9660 -3.1593 36 1 3.4576 -5.5816 -1.8910 37 1 2.4316 -5.1153 -3.2688 38 1 4.3221 -8.8191 -0.6683 39 1 2.9086 -5.9441 -5.6214 40 1 4.1855 -7.2531 -5.8620 41 1 3.0362 -8.6945 -4.1188 42 1 1.7593 -7.3859 -3.8775 43 1 4.7011 -2.7970 1.1504 44 1 3.6243 -2.4199 2.5164 45 1 2.9756 -3.2261 1.0679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563523255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:23 Heat of formation + Delta-G solvation = -105.438155 kcal Electronic energy + Delta-G solvation = -26001.671752 eV Core-core repulsion = 22339.790748 eV Total energy + Delta-G solvation = -3661.881005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14012 -36.76478 -36.29755 -35.68848 -35.05547 -32.96631 -32.05159 -31.86165 -28.88883 -28.16878 -25.71910 -25.44909 -23.77443 -21.51547 -21.22262 -20.07894 -19.64036 -18.65266 -17.16869 -16.86115 -16.45343 -15.93252 -15.76397 -15.19932 -14.87127 -14.75665 -14.42007 -14.24589 -13.83229 -13.34662 -13.15540 -13.11750 -12.84444 -12.39221 -12.22675 -12.03460 -11.94496 -11.85013 -11.62239 -11.30346 -11.25747 -11.17675 -11.03223 -10.98403 -10.95438 -10.84234 -10.65025 -10.57515 -10.46044 -10.12391 -9.79044 -9.71345 -9.18357 -8.96139 -8.58079 -8.10079 -6.14983 -4.25347 1.06874 3.27906 3.35914 3.42358 3.43230 3.61957 4.29652 4.36698 4.38395 4.55131 4.64894 4.77279 4.92418 5.03129 5.07987 5.13827 5.20180 5.22762 5.24853 5.31965 5.39679 5.48605 5.53525 5.62480 5.67325 5.74367 5.83031 5.89007 5.95775 5.98216 6.01934 6.15522 6.21500 6.26240 6.36306 6.60106 6.71155 6.82860 6.97445 7.20634 7.27444 7.38140 7.79836 8.19573 8.80537 9.45910 10.92733 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.004130 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.214052 B = 6777.905773 C = 7356.285198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.068 0.932 4 C -0.149 4.149 5 C -0.126 4.126 6 H 0.091 0.909 7 C 0.123 3.877 8 N -1.134 6.134 9 S 2.607 3.393 10 O -0.975 6.975 11 O -0.950 6.950 12 C -0.554 4.554 13 C 0.043 3.957 14 C -0.515 4.515 15 H 0.069 0.931 16 C 0.082 3.918 17 N -0.874 5.874 18 Si 0.892 3.108 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.283 1.283 22 C -0.208 4.208 23 C -0.141 4.141 24 C 0.082 3.918 25 H 0.071 0.929 26 C -0.164 4.164 27 O -0.371 6.371 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.408 0.592 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.263 0.737 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 15.087 3.699 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.086 0.914 4 C -0.187 4.187 5 C -0.146 4.146 6 H 0.110 0.890 7 C -0.003 4.003 8 N -0.891 5.891 9 S 2.704 3.296 10 O -0.966 6.966 11 O -0.940 6.940 12 C -0.687 4.687 13 C 0.040 3.960 14 C -0.552 4.552 15 H 0.087 0.913 16 C -0.123 4.123 17 N -0.510 5.510 18 Si 0.719 3.281 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.245 4.245 23 C -0.180 4.180 24 C 0.024 3.976 25 H 0.088 0.912 26 C -0.221 4.221 27 O -0.291 6.291 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.240 0.760 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.058 14.765 3.666 16.375 hybrid contribution 0.067 -0.321 0.293 0.439 sum -5.990 14.445 3.959 16.131 Atomic orbital electron populations 1.21774 0.93209 1.03156 1.02237 1.23081 0.95171 0.95122 0.85233 0.91424 1.23321 0.95760 1.01204 0.98432 1.22779 0.98346 0.97695 0.95801 0.89039 1.21506 1.02580 0.96317 0.79915 1.56014 1.81780 1.36903 1.14383 1.05125 0.76277 0.74585 0.73583 1.93505 1.87587 1.83379 1.32096 1.93530 1.40058 1.85261 1.75164 1.29973 1.12314 1.14582 1.11807 1.18291 0.96174 0.91595 0.89916 1.20566 0.91236 1.28064 1.15360 0.91304 1.24951 0.96451 0.95361 0.95527 1.69986 1.28978 1.38383 1.13644 0.86521 0.83730 0.79177 0.78687 1.19225 1.20616 1.20849 1.23197 1.04711 1.03148 0.93491 1.22552 0.95490 0.97466 1.02531 1.22673 0.84695 0.97262 0.93009 0.91159 1.22125 1.02873 0.95637 1.01488 1.88910 1.27885 1.73339 1.38929 0.91576 0.92014 0.91169 0.90114 0.89676 0.91257 0.89504 0.76020 0.84878 0.88299 0.92771 0.90704 0.89521 0.89587 0.91549 0.90284 0.91865 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.66 37.16 0.36 -0.81 16 2 C 0.07 0.66 3.98 -25.68 -0.10 0.56 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -1.37 5.63 -24.72 -0.14 -1.50 16 5 C -0.13 -1.30 3.18 -89.08 -0.28 -1.59 16 6 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 7 C 0.12 1.59 4.24 -4.04 -0.02 1.57 16 8 N -1.13 -16.18 5.80 -10.62 -0.06 -16.24 16 9 S 2.61 51.53 5.19 -107.50 -0.56 50.97 16 10 O -0.98 -21.13 18.08 -57.54 -1.04 -22.17 16 11 O -0.95 -22.22 17.18 -57.54 -0.99 -23.21 16 12 C -0.55 -11.40 5.92 37.16 0.22 -11.18 16 13 C 0.04 1.03 1.32 -155.66 -0.21 0.82 16 14 C -0.52 -13.98 8.18 -34.44 -0.28 -14.27 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 17 N -0.87 -23.78 12.98 55.43 0.72 -23.06 16 18 Si 0.89 21.26 29.55 -169.99 -5.02 16.23 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16 23 C -0.14 -3.20 9.49 -26.69 -0.25 -3.45 16 24 C 0.08 0.87 4.05 -26.16 -0.11 0.76 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 C -0.16 -1.80 8.40 37.15 0.31 -1.48 16 27 O -0.37 -4.34 10.89 -35.23 -0.38 -4.72 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.82 7.74 -51.93 -0.40 0.42 16 33 H 0.07 0.86 6.85 -51.93 -0.36 0.50 16 34 H 0.09 1.20 6.21 -51.93 -0.32 0.88 16 35 H 0.41 4.84 8.24 -34.47 -0.28 4.55 16 36 H 0.13 2.83 8.14 -51.93 -0.42 2.41 16 37 H 0.10 1.72 8.09 -51.92 -0.42 1.30 16 38 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.08 0.84 6.80 -51.93 -0.35 0.49 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.82 6.75 -51.93 -0.35 0.47 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -32.60 373.05 -10.10 -42.70 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.53 Total: 7.13 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: -0.86 Total: -33.26 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.66 Total: -39.30 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -2.41 Total: -50.10 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -0.56 Total: 50.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.60 -10.10 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563523255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.737 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds