Wall clock time and date at job start Tue Mar 31 2020 12:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.55506 * 2 1 4 4 C 1.54991 * 110.61911 * 237.11364 * 2 1 3 5 5 C 1.54814 * 102.09362 * 204.47444 * 4 2 1 6 6 H 1.08994 * 110.49026 * 262.07411 * 5 4 2 7 7 C 1.53004 * 110.48438 * 139.55967 * 5 4 2 8 8 N 1.46495 * 109.47143 * 66.45465 * 7 5 4 9 9 S 1.65599 * 119.99648 * 165.27235 * 8 7 5 10 10 O 1.42110 * 104.27597 * 180.79661 * 9 8 7 11 11 O 1.42098 * 104.28200 * 308.65315 * 9 8 7 12 12 C 1.81403 * 104.45003 * 64.72875 * 9 8 7 13 13 C 1.52997 * 109.47124 * 173.80420 * 12 9 8 14 14 C 1.50700 * 115.54884 * 65.19552 * 13 12 9 15 15 H 1.08004 * 120.00091 * 264.77971 * 14 13 12 16 16 C 1.37879 * 120.00026 * 84.78402 * 14 13 12 17 17 N 1.31516 * 119.99983 * 352.23228 * 16 14 13 18 18 Si 1.86802 * 120.00072 * 172.23252 * 16 14 13 19 19 H 1.48497 * 109.47048 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47087 * 120.00078 * 18 16 14 21 21 H 1.48503 * 109.46948 * 239.99695 * 18 16 14 22 22 C 1.53003 * 117.50167 * 279.52594 * 13 12 9 23 23 C 1.53002 * 117.50015 * 210.86444 * 13 12 9 24 24 C 1.54105 * 104.18539 * 20.88816 * 5 4 2 25 25 H 1.08997 * 109.87371 * 242.60259 * 24 5 4 26 26 C 1.52992 * 109.88080 * 121.45026 * 24 5 4 27 27 O 1.43743 * 107.29554 * 2.02325 * 24 5 4 28 28 H 1.08997 * 109.47077 * 182.88225 * 1 2 3 29 29 H 1.09006 * 109.47106 * 302.88387 * 1 2 3 30 30 H 1.08996 * 109.46792 * 62.87955 * 1 2 3 31 31 H 1.08999 * 110.90283 * 86.28435 * 4 2 1 32 32 H 1.08997 * 110.94132 * 322.69545 * 4 2 1 33 33 H 1.08999 * 109.46906 * 306.45484 * 7 5 4 34 34 H 1.08995 * 109.46818 * 186.46227 * 7 5 4 35 35 H 0.97002 * 120.00143 * 345.00135 * 8 7 5 36 36 H 1.08997 * 109.47169 * 293.80869 * 12 9 8 37 37 H 1.09005 * 109.46878 * 53.80995 * 12 9 8 38 38 H 0.97003 * 120.00122 * 185.02211 * 17 16 14 39 39 H 1.08997 * 117.49767 * 359.97438 * 22 13 12 40 40 H 1.08999 * 117.49842 * 145.02264 * 22 13 12 41 41 H 1.09001 * 117.49716 * 214.98342 * 23 13 12 42 42 H 1.09001 * 117.49794 * 359.97438 * 23 13 12 43 43 H 1.09004 * 109.47359 * 59.99633 * 26 24 5 44 44 H 1.09002 * 109.47507 * 179.97438 * 26 24 5 45 45 H 1.09002 * 109.47358 * 299.99732 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7877 -1.2182 5 6 3.4795 -1.2157 -0.7251 6 1 4.2409 -0.5330 -1.1022 7 6 3.7855 -2.6503 -1.1603 8 7 3.9002 -2.7039 -2.6198 9 16 4.5780 -4.0272 -3.3489 10 8 4.5378 -3.7219 -4.7363 11 8 5.8155 -4.2043 -2.6734 12 6 3.4419 -5.3879 -2.9635 13 6 3.8797 -6.6464 -3.7155 14 6 5.2137 -7.2164 -3.3073 15 1 6.1046 -6.9536 -3.8584 16 6 5.2968 -8.0734 -2.2304 17 7 4.2448 -8.2742 -1.4671 18 14 6.9036 -8.9492 -1.8556 19 1 7.9271 -8.5559 -2.8571 20 1 7.3685 -8.5706 -0.4971 21 1 6.6924 -10.4180 -1.9150 22 6 3.4823 -6.7635 -5.1883 23 6 2.7889 -7.6331 -4.1366 24 6 3.3839 -1.1267 0.8104 25 1 4.0853 -0.3800 1.1826 26 6 3.6934 -2.4904 1.4309 27 8 2.0384 -0.7369 1.1328 28 1 -0.3633 -1.0263 0.0517 29 1 -0.3633 0.5580 0.8630 30 1 -0.3633 0.4685 -0.9147 31 1 2.1510 -0.1446 -2.0951 32 1 1.4551 -1.6585 -1.4288 33 1 2.9798 -3.3083 -0.8348 34 1 4.7236 -2.9743 -0.7099 35 1 3.5755 -1.9660 -3.1593 36 1 3.4576 -5.5816 -1.8910 37 1 2.4316 -5.1153 -3.2688 38 1 4.3221 -8.8191 -0.6683 39 1 2.9086 -5.9441 -5.6214 40 1 4.1855 -7.2531 -5.8620 41 1 3.0362 -8.6945 -4.1188 42 1 1.7593 -7.3859 -3.8775 43 1 4.7011 -2.7970 1.1504 44 1 3.6243 -2.4199 2.5164 45 1 2.9756 -3.2261 1.0679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563523255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:22 Heat of formation + Delta-G solvation = -128.114879 kcal Electronic energy + Delta-G solvation = -26002.655089 eV Core-core repulsion = 22339.790748 eV Total energy + Delta-G solvation = -3662.864341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94381 -38.56240 -37.95042 -36.87894 -36.63715 -34.08118 -33.73705 -32.81129 -29.86509 -29.61800 -27.48981 -26.67307 -24.59606 -22.99130 -22.23035 -21.53811 -20.86616 -20.20136 -18.44070 -18.30456 -17.94432 -17.05124 -16.77547 -16.69687 -16.65558 -15.98302 -15.76058 -15.46456 -15.25730 -14.87456 -14.30499 -14.03561 -13.76055 -13.65951 -13.53639 -13.25166 -13.11973 -13.07971 -12.89926 -12.89170 -12.85230 -12.77643 -12.73092 -12.43762 -12.26443 -12.16212 -11.90222 -11.72610 -11.66859 -11.53930 -11.47626 -10.87108 -10.61658 -10.54743 -10.40454 -9.85874 -8.19174 -6.33576 -0.50131 1.37090 1.40752 1.51641 2.03746 2.39940 2.86988 2.94056 3.08198 3.38351 3.42551 3.53400 3.59374 3.86323 3.99126 4.04854 4.23347 4.26071 4.31842 4.42148 4.45966 4.48203 4.52850 4.60099 4.62028 4.69867 4.74955 4.83374 4.86365 4.93304 4.98032 5.00027 5.14808 5.18790 5.21575 5.24596 5.31207 5.35533 5.47518 5.58962 5.72350 6.07685 6.18596 6.23191 6.72761 7.38837 8.87990 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.004130 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.214052 B = 6777.905773 C = 7356.285198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 H 0.082 0.918 4 C -0.148 4.148 5 C -0.121 4.121 6 H 0.104 0.896 7 C 0.116 3.884 8 N -1.113 6.113 9 S 2.626 3.374 10 O -0.995 6.995 11 O -0.993 6.993 12 C -0.553 4.553 13 C 0.010 3.990 14 C -0.533 4.533 15 H 0.048 0.952 16 C 0.044 3.956 17 N -0.892 5.892 18 Si 0.935 3.065 19 H -0.273 1.273 20 H -0.276 1.276 21 H -0.273 1.273 22 C -0.196 4.196 23 C -0.139 4.139 24 C 0.082 3.918 25 H 0.084 0.916 26 C -0.167 4.167 27 O -0.392 6.392 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.423 0.577 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.265 0.735 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.801 16.663 3.552 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.100 0.900 4 C -0.186 4.186 5 C -0.141 4.141 6 H 0.123 0.877 7 C -0.010 4.010 8 N -0.874 5.874 9 S 2.722 3.278 10 O -0.985 6.985 11 O -0.982 6.982 12 C -0.685 4.685 13 C 0.008 3.992 14 C -0.571 4.571 15 H 0.066 0.934 16 C -0.159 4.159 17 N -0.528 5.528 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.198 1.198 22 C -0.234 4.234 23 C -0.178 4.178 24 C 0.023 3.977 25 H 0.101 0.899 26 C -0.224 4.224 27 O -0.313 6.313 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.259 0.741 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.095 16.341 3.503 18.156 hybrid contribution 0.357 -0.771 0.346 0.917 sum -6.738 15.570 3.849 17.397 Atomic orbital electron populations 1.21794 0.92449 1.02704 1.03310 1.23286 0.95866 0.95513 0.84405 0.90032 1.23360 0.94561 1.01437 0.99242 1.22753 0.99656 0.95932 0.95759 0.87735 1.21689 1.02253 0.98500 0.78560 1.55441 1.81246 1.35596 1.15136 1.04272 0.75641 0.74958 0.72881 1.93467 1.87831 1.83779 1.33460 1.93479 1.42650 1.86180 1.75910 1.29873 1.14391 1.13582 1.10693 1.18429 0.95537 0.93425 0.91859 1.20726 0.92200 1.28702 1.15442 0.93360 1.25497 0.98875 0.95932 0.95592 1.70026 1.29959 1.38885 1.13908 0.85859 0.80923 0.78788 0.78417 1.19768 1.20099 1.19786 1.23247 1.04257 1.03358 0.92488 1.22508 0.96233 0.96241 1.02825 1.22708 0.84785 0.97123 0.93052 0.89853 1.22141 1.02484 0.95985 1.01818 1.88895 1.28298 1.73843 1.40221 0.92669 0.91915 0.89263 0.87949 0.90210 0.90825 0.90768 0.74148 0.85916 0.84893 0.92543 0.88242 0.89964 0.91617 0.89407 0.90423 0.91548 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.66 71.98 0.70 -1.30 16 2 C 0.07 1.06 3.98 31.28 0.12 1.18 16 3 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.15 -2.29 5.63 31.89 0.18 -2.11 16 5 C -0.12 -2.24 3.18 -9.80 -0.03 -2.27 16 6 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 7 C 0.12 2.84 4.24 86.38 0.37 3.20 16 8 N -1.11 -29.77 5.80 -187.50 -1.09 -30.86 16 9 S 2.63 101.77 5.19 -56.49 -0.29 101.48 16 10 O -1.00 -41.87 18.08 -127.65 -2.31 -44.18 16 11 O -0.99 -46.86 17.18 -127.65 -2.19 -49.05 16 12 C -0.55 -22.19 5.92 71.98 0.43 -21.76 16 13 C 0.01 0.46 1.32 -52.93 -0.07 0.39 16 14 C -0.53 -29.35 8.18 25.60 0.21 -29.14 16 15 H 0.05 2.77 7.83 -2.91 -0.02 2.75 16 16 C 0.04 2.39 5.38 84.65 0.46 2.85 16 17 N -0.89 -48.65 12.98 21.45 0.28 -48.37 16 18 Si 0.93 43.80 29.55 68.60 2.03 45.83 16 19 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 C -0.20 -8.34 9.96 30.62 0.30 -8.04 16 23 C -0.14 -6.17 9.49 30.62 0.29 -5.88 16 24 C 0.08 1.60 4.05 30.97 0.13 1.73 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 C -0.17 -3.58 8.40 71.98 0.60 -2.98 16 27 O -0.39 -8.55 10.89 -148.98 -1.62 -10.17 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.34 7.74 -2.39 -0.02 1.32 16 33 H 0.07 1.76 6.85 -2.39 -0.02 1.74 16 34 H 0.07 2.03 6.21 -2.39 -0.01 2.02 16 35 H 0.42 8.89 8.24 -96.74 -0.80 8.09 16 36 H 0.12 5.19 8.14 -2.39 -0.02 5.17 16 37 H 0.13 4.29 8.09 -2.39 -0.02 4.27 16 38 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 39 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 40 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.13 16 42 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 43 H 0.08 1.65 6.80 -2.38 -0.02 1.64 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.41 6.75 -2.39 -0.02 1.39 16 Total: -1.00 -69.53 373.05 -1.34 -70.87 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.18 Total: 28.58 kcal Atomic # 6 Polarization: -67.80 SS G_CDS: 3.68 Total: -64.12 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -0.81 Total: -79.23 kcal Atomic # 8 Polarization: -97.28 SS G_CDS: -6.12 Total: -103.40 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 101.77 SS G_CDS: -0.29 Total: 101.48 kcal Total: -69.53 -1.34 -70.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563523255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.245 kcal (2) G-P(sol) polarization free energy of solvation -69.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds