Wall clock time and date at job start Tue Mar 31 2020 12:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.27103 * 2 1 4 4 C 1.54948 * 110.30972 * 237.80852 * 2 1 3 5 5 C 1.55304 * 100.94071 * 204.64138 * 4 2 1 6 6 H 1.08998 * 110.84632 * 275.94079 * 5 4 2 7 7 C 1.52995 * 110.84683 * 152.32501 * 5 4 2 8 8 N 1.46495 * 109.47603 * 72.16447 * 7 5 4 9 9 S 1.65601 * 119.99986 * 164.99920 * 8 7 5 10 10 O 1.42107 * 104.27369 * 181.07328 * 9 8 7 11 11 O 1.42098 * 104.27842 * 308.92706 * 9 8 7 12 12 C 1.81394 * 104.45096 * 65.00225 * 9 8 7 13 13 C 1.52997 * 109.47345 * 173.86081 * 12 9 8 14 14 C 1.50705 * 115.54866 * 39.91940 * 13 12 9 15 15 H 1.07999 * 119.99586 * 264.79061 * 14 13 12 16 16 C 1.37873 * 120.00248 * 84.79313 * 14 13 12 17 17 N 1.31517 * 119.99628 * 353.00901 * 16 14 13 18 18 Si 1.86799 * 120.00407 * 173.00315 * 16 14 13 19 19 H 1.48505 * 109.46696 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46920 * 119.99825 * 18 16 14 21 21 H 1.48499 * 109.47426 * 240.00186 * 18 16 14 22 22 C 1.53000 * 117.49940 * 254.21067 * 13 12 9 23 23 C 1.52998 * 117.50123 * 185.58686 * 13 12 9 24 24 C 1.54381 * 102.25351 * 34.12872 * 5 4 2 25 25 H 1.09003 * 109.90088 * 98.20650 * 24 5 4 26 26 C 1.53000 * 109.82988 * 219.13248 * 24 5 4 27 27 O 1.43234 * 107.58997 * 338.64407 * 24 5 4 28 28 H 1.09001 * 109.47353 * 299.35737 * 1 2 3 29 29 H 1.08997 * 109.47328 * 59.35823 * 1 2 3 30 30 H 1.09003 * 109.47082 * 179.36341 * 1 2 3 31 31 H 1.09008 * 111.12158 * 322.55848 * 4 2 1 32 32 H 1.09000 * 111.12401 * 86.67360 * 4 2 1 33 33 H 1.09005 * 109.46970 * 192.16784 * 7 5 4 34 34 H 1.09001 * 109.46966 * 312.15824 * 7 5 4 35 35 H 0.96998 * 119.99791 * 345.00193 * 8 7 5 36 36 H 1.09003 * 109.47120 * 293.86266 * 12 9 8 37 37 H 1.08998 * 109.47418 * 53.86008 * 12 9 8 38 38 H 0.97005 * 119.99555 * 185.01676 * 17 16 14 39 39 H 1.08993 * 117.49983 * 359.97438 * 22 13 12 40 40 H 1.08999 * 117.49849 * 145.01973 * 22 13 12 41 41 H 1.09001 * 117.50519 * 214.97945 * 23 13 12 42 42 H 1.08998 * 117.49871 * 0.02562 * 23 13 12 43 43 H 1.08997 * 109.46933 * 179.59268 * 26 24 5 44 44 H 1.08995 * 109.47596 * 59.58765 * 26 24 5 45 45 H 1.09008 * 109.47114 * 299.58951 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0678 -0.7742 -1.2298 5 6 3.4699 -1.2032 -0.7179 6 1 4.1974 -0.4049 -0.8646 7 6 3.9284 -2.4923 -1.4024 8 7 4.2790 -2.2073 -2.7960 9 16 5.1502 -3.3095 -3.6727 10 8 5.3187 -2.6932 -4.9420 11 8 6.2688 -3.6074 -2.8486 12 6 4.0554 -4.7498 -3.8048 13 6 4.6905 -5.7901 -4.7296 14 6 6.1793 -5.9701 -4.5800 15 1 6.8558 -5.4347 -5.2296 16 6 6.6775 -6.8183 -3.6139 17 7 5.8650 -7.3633 -2.7351 18 14 8.5065 -7.1934 -3.5534 19 1 9.1984 -6.4600 -4.6437 20 1 9.0565 -6.7647 -2.2424 21 1 8.7184 -8.6530 -3.7258 22 6 4.0970 -5.9454 -6.1312 23 6 3.8606 -7.0279 -5.0760 24 6 3.2112 -1.4412 0.7854 25 1 3.0630 -2.5048 0.9725 26 6 4.3991 -0.9310 1.6036 27 8 2.0286 -0.7157 1.1413 28 1 -0.3634 0.5038 0.8957 29 1 -0.3634 0.5237 -0.8841 30 1 -0.3633 -1.0276 -0.0114 31 1 1.4470 -1.6429 -1.4493 32 1 2.1488 -0.1223 -2.0996 33 1 4.8002 -2.8896 -0.8824 34 1 3.1226 -3.2257 -1.3731 35 1 4.0009 -1.3730 -3.2051 36 1 3.9065 -5.1849 -2.8165 37 1 3.0939 -4.4391 -4.2135 38 1 6.2234 -7.9014 -2.0118 39 1 3.2538 -5.3069 -6.3943 40 1 4.7833 -6.1778 -6.9455 41 1 4.3913 -7.9723 -5.1962 42 1 2.8620 -7.1009 -4.6454 43 1 4.2072 -1.0952 2.6639 44 1 4.5359 0.1347 1.4199 45 1 5.3005 -1.4689 1.3099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563523257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:27 Heat of formation + Delta-G solvation = -110.702752 kcal Electronic energy + Delta-G solvation = -25856.823670 eV Core-core repulsion = 22194.714375 eV Total energy + Delta-G solvation = -3662.109295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.06390 -36.73544 -36.16432 -35.59325 -34.88267 -32.93706 -32.06780 -31.86241 -28.95549 -28.19131 -26.05470 -25.45829 -23.15912 -21.40273 -21.21218 -20.63608 -19.60717 -18.53352 -17.24145 -16.87527 -16.47279 -15.89182 -15.41624 -15.07172 -14.69589 -14.66080 -14.39386 -14.14281 -13.68731 -13.50296 -13.16359 -13.06912 -12.92377 -12.83071 -12.19787 -12.03143 -11.95995 -11.86331 -11.76689 -11.35735 -11.14074 -11.02841 -11.01810 -10.99076 -10.90107 -10.78366 -10.63228 -10.51203 -10.35461 -10.11897 -9.72171 -9.65805 -9.21580 -8.90988 -8.55209 -8.11981 -6.16842 -4.31189 1.18254 3.30853 3.39650 3.44890 3.53115 3.60335 4.25812 4.39500 4.43123 4.56015 4.69194 4.89405 4.93594 5.04103 5.08241 5.13629 5.20048 5.22017 5.25879 5.32264 5.38360 5.49863 5.53132 5.61156 5.70039 5.77986 5.79463 5.88501 5.94910 5.96947 6.04891 6.11463 6.19999 6.30778 6.34806 6.60794 6.69013 6.92418 6.94428 7.16545 7.29591 7.38418 7.78371 8.18018 8.77929 9.46075 10.90857 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.003942 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.850062 B = 7101.376047 C = 7695.383906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 H 0.068 0.932 4 C -0.150 4.150 5 C -0.125 4.125 6 H 0.095 0.905 7 C 0.128 3.872 8 N -1.137 6.137 9 S 2.624 3.376 10 O -0.976 6.976 11 O -0.942 6.942 12 C -0.560 4.560 13 C 0.050 3.950 14 C -0.542 4.542 15 H 0.069 0.931 16 C 0.097 3.903 17 N -0.867 5.867 18 Si 0.893 3.107 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.283 1.283 22 C -0.205 4.205 23 C -0.144 4.144 24 C 0.082 3.918 25 H 0.086 0.914 26 C -0.164 4.164 27 O -0.376 6.376 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.407 0.593 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 12.276 6.093 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 H 0.086 0.914 4 C -0.188 4.188 5 C -0.145 4.145 6 H 0.113 0.887 7 C 0.001 3.999 8 N -0.893 5.893 9 S 2.721 3.279 10 O -0.967 6.967 11 O -0.931 6.931 12 C -0.693 4.693 13 C 0.048 3.952 14 C -0.580 4.580 15 H 0.088 0.912 16 C -0.110 4.110 17 N -0.501 5.501 18 Si 0.719 3.281 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.209 1.209 22 C -0.242 4.242 23 C -0.183 4.183 24 C 0.024 3.976 25 H 0.104 0.896 26 C -0.221 4.221 27 O -0.296 6.296 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.239 0.761 36 H 0.145 0.855 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.975 12.091 6.208 16.287 hybrid contribution 0.167 -0.243 -0.039 0.297 sum -8.808 11.848 6.169 16.000 Atomic orbital electron populations 1.21887 0.93803 1.02902 1.02237 1.22922 0.94762 0.95464 0.85044 0.91411 1.23451 0.95735 1.01230 0.98350 1.23006 0.97892 0.98936 0.94699 0.88708 1.21166 1.00950 0.95972 0.81777 1.56115 1.76705 1.34751 1.21737 1.04620 0.75440 0.74739 0.73129 1.93486 1.85622 1.75224 1.42355 1.93525 1.47029 1.84434 1.68134 1.29972 1.12181 1.17271 1.09826 1.18182 0.93802 0.93605 0.89627 1.20634 0.88486 1.28930 1.19907 0.91241 1.24892 0.98148 0.93510 0.94421 1.69961 1.34842 1.32050 1.13255 0.86511 0.85016 0.77725 0.78816 1.19218 1.20298 1.20858 1.23125 1.02449 1.04322 0.94273 1.22528 0.99028 0.94577 1.02180 1.22697 0.85593 0.96670 0.92635 0.89627 1.22165 0.97509 1.01746 1.00697 1.88437 1.42215 1.64857 1.34081 0.92018 0.91297 0.91823 0.89703 0.89786 0.89671 0.91646 0.76071 0.85536 0.88538 0.92598 0.91279 0.89688 0.89641 0.91652 0.91879 0.92332 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.62 37.16 0.36 -0.83 16 2 C 0.08 0.70 4.07 -25.70 -0.10 0.59 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.15 -1.36 5.83 -24.48 -0.14 -1.50 16 5 C -0.13 -1.31 2.58 -88.68 -0.23 -1.54 16 6 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 7 C 0.13 1.64 5.44 -4.05 -0.02 1.62 16 8 N -1.14 -16.53 5.84 -10.62 -0.06 -16.59 16 9 S 2.62 53.81 4.63 -107.50 -0.50 53.31 16 10 O -0.98 -22.25 18.08 -57.54 -1.04 -23.29 16 11 O -0.94 -22.85 16.63 -57.54 -0.96 -23.81 16 12 C -0.56 -11.50 6.18 37.16 0.23 -11.27 16 13 C 0.05 1.21 1.64 -155.66 -0.26 0.95 16 14 C -0.54 -14.80 6.89 -34.44 -0.24 -15.03 16 15 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 16 C 0.10 2.67 5.39 -17.82 -0.10 2.57 16 17 N -0.87 -23.74 12.96 55.43 0.72 -23.02 16 18 Si 0.89 21.76 29.55 -169.99 -5.02 16.74 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.20 -4.41 9.88 -26.73 -0.26 -4.68 16 23 C -0.14 -3.26 9.50 -26.73 -0.25 -3.51 16 24 C 0.08 0.88 3.76 -26.01 -0.10 0.78 16 25 H 0.09 0.91 7.82 -51.93 -0.41 0.51 16 26 C -0.16 -1.62 9.44 37.16 0.35 -1.27 16 27 O -0.38 -4.35 10.70 -35.23 -0.38 -4.72 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.77 7.84 -51.92 -0.41 0.36 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.20 7.69 -51.93 -0.40 0.80 16 34 H 0.07 0.77 7.99 -51.93 -0.41 0.35 16 35 H 0.41 4.94 8.48 -34.47 -0.29 4.65 16 36 H 0.13 2.60 8.14 -51.92 -0.42 2.18 16 37 H 0.10 1.64 7.95 -51.92 -0.41 1.23 16 38 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 39 H 0.07 1.31 8.08 -51.93 -0.42 0.90 16 40 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -32.75 377.48 -10.09 -42.84 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.78 Total: 5.98 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: -0.77 Total: -33.11 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.66 Total: -39.62 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -2.37 Total: -51.83 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 53.81 SS G_CDS: -0.50 Total: 53.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.75 -10.09 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563523257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.863 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds