Wall clock time and date at job start Tue Mar 31 2020 12:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.27103 * 2 1 4 4 C 1.54948 * 110.30972 * 237.80852 * 2 1 3 5 5 C 1.55304 * 100.94071 * 204.64138 * 4 2 1 6 6 H 1.08998 * 110.84632 * 275.94079 * 5 4 2 7 7 C 1.52995 * 110.84683 * 152.32501 * 5 4 2 8 8 N 1.46495 * 109.47603 * 72.16447 * 7 5 4 9 9 S 1.65601 * 119.99986 * 164.99920 * 8 7 5 10 10 O 1.42107 * 104.27369 * 181.07328 * 9 8 7 11 11 O 1.42098 * 104.27842 * 308.92706 * 9 8 7 12 12 C 1.81394 * 104.45096 * 65.00225 * 9 8 7 13 13 C 1.52997 * 109.47345 * 173.86081 * 12 9 8 14 14 C 1.50705 * 115.54866 * 39.91940 * 13 12 9 15 15 H 1.07999 * 119.99586 * 264.79061 * 14 13 12 16 16 C 1.37873 * 120.00248 * 84.79313 * 14 13 12 17 17 N 1.31517 * 119.99628 * 353.00901 * 16 14 13 18 18 Si 1.86799 * 120.00407 * 173.00315 * 16 14 13 19 19 H 1.48505 * 109.46696 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46920 * 119.99825 * 18 16 14 21 21 H 1.48499 * 109.47426 * 240.00186 * 18 16 14 22 22 C 1.53000 * 117.49940 * 254.21067 * 13 12 9 23 23 C 1.52998 * 117.50123 * 185.58686 * 13 12 9 24 24 C 1.54381 * 102.25351 * 34.12872 * 5 4 2 25 25 H 1.09003 * 109.90088 * 98.20650 * 24 5 4 26 26 C 1.53000 * 109.82988 * 219.13248 * 24 5 4 27 27 O 1.43234 * 107.58997 * 338.64407 * 24 5 4 28 28 H 1.09001 * 109.47353 * 299.35737 * 1 2 3 29 29 H 1.08997 * 109.47328 * 59.35823 * 1 2 3 30 30 H 1.09003 * 109.47082 * 179.36341 * 1 2 3 31 31 H 1.09008 * 111.12158 * 322.55848 * 4 2 1 32 32 H 1.09000 * 111.12401 * 86.67360 * 4 2 1 33 33 H 1.09005 * 109.46970 * 192.16784 * 7 5 4 34 34 H 1.09001 * 109.46966 * 312.15824 * 7 5 4 35 35 H 0.96998 * 119.99791 * 345.00193 * 8 7 5 36 36 H 1.09003 * 109.47120 * 293.86266 * 12 9 8 37 37 H 1.08998 * 109.47418 * 53.86008 * 12 9 8 38 38 H 0.97005 * 119.99555 * 185.01676 * 17 16 14 39 39 H 1.08993 * 117.49983 * 359.97438 * 22 13 12 40 40 H 1.08999 * 117.49849 * 145.01973 * 22 13 12 41 41 H 1.09001 * 117.50519 * 214.97945 * 23 13 12 42 42 H 1.08998 * 117.49871 * 0.02562 * 23 13 12 43 43 H 1.08997 * 109.46933 * 179.59268 * 26 24 5 44 44 H 1.08995 * 109.47596 * 59.58765 * 26 24 5 45 45 H 1.09008 * 109.47114 * 299.58951 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0678 -0.7742 -1.2298 5 6 3.4699 -1.2032 -0.7179 6 1 4.1974 -0.4049 -0.8646 7 6 3.9284 -2.4923 -1.4024 8 7 4.2790 -2.2073 -2.7960 9 16 5.1502 -3.3095 -3.6727 10 8 5.3187 -2.6932 -4.9420 11 8 6.2688 -3.6074 -2.8486 12 6 4.0554 -4.7498 -3.8048 13 6 4.6905 -5.7901 -4.7296 14 6 6.1793 -5.9701 -4.5800 15 1 6.8558 -5.4347 -5.2296 16 6 6.6775 -6.8183 -3.6139 17 7 5.8650 -7.3633 -2.7351 18 14 8.5065 -7.1934 -3.5534 19 1 9.1984 -6.4600 -4.6437 20 1 9.0565 -6.7647 -2.2424 21 1 8.7184 -8.6530 -3.7258 22 6 4.0970 -5.9454 -6.1312 23 6 3.8606 -7.0279 -5.0760 24 6 3.2112 -1.4412 0.7854 25 1 3.0630 -2.5048 0.9725 26 6 4.3991 -0.9310 1.6036 27 8 2.0286 -0.7157 1.1413 28 1 -0.3634 0.5038 0.8957 29 1 -0.3634 0.5237 -0.8841 30 1 -0.3633 -1.0276 -0.0114 31 1 1.4470 -1.6429 -1.4493 32 1 2.1488 -0.1223 -2.0996 33 1 4.8002 -2.8896 -0.8824 34 1 3.1226 -3.2257 -1.3731 35 1 4.0009 -1.3730 -3.2051 36 1 3.9065 -5.1849 -2.8165 37 1 3.0939 -4.4391 -4.2135 38 1 6.2234 -7.9014 -2.0118 39 1 3.2538 -5.3069 -6.3943 40 1 4.7833 -6.1778 -6.9455 41 1 4.3913 -7.9723 -5.1962 42 1 2.8620 -7.1009 -4.6454 43 1 4.2072 -1.0952 2.6639 44 1 4.5359 0.1347 1.4199 45 1 5.3005 -1.4689 1.3099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563523257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:26 Heat of formation + Delta-G solvation = -133.396019 kcal Electronic energy + Delta-G solvation = -25857.807724 eV Core-core repulsion = 22194.714375 eV Total energy + Delta-G solvation = -3663.093349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86529 -38.52258 -37.85605 -36.79683 -36.52902 -34.09185 -33.66403 -32.82382 -29.85917 -29.71836 -27.50046 -26.93364 -24.00625 -22.94973 -22.15885 -21.69574 -21.22067 -20.08547 -18.46139 -18.24868 -18.03463 -17.07852 -16.79975 -16.66678 -16.38003 -15.78853 -15.55923 -15.28124 -15.24429 -14.84900 -14.29579 -14.04928 -13.91606 -13.75011 -13.65537 -13.50335 -13.19836 -13.03256 -12.89461 -12.81240 -12.74183 -12.69807 -12.61433 -12.43376 -12.29354 -12.06813 -11.87959 -11.78190 -11.64827 -11.56723 -11.49200 -10.86654 -10.54051 -10.44937 -10.39142 -9.88171 -8.22599 -6.39536 -0.41392 1.34988 1.40270 1.48549 2.15852 2.39849 2.81699 3.05502 3.08880 3.36017 3.45310 3.56456 3.69128 3.78258 4.00586 4.13227 4.24367 4.26045 4.34920 4.41721 4.45337 4.49754 4.59583 4.61348 4.63909 4.70502 4.80185 4.86106 4.87268 4.91524 4.99787 5.07143 5.10367 5.13362 5.21083 5.27761 5.32999 5.36562 5.41755 5.62197 5.69878 6.16336 6.20388 6.22243 6.69808 7.38260 8.84535 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.003942 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.850062 B = 7101.376047 C = 7695.383906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.076 0.924 4 C -0.147 4.147 5 C -0.119 4.119 6 H 0.099 0.901 7 C 0.121 3.879 8 N -1.116 6.116 9 S 2.635 3.365 10 O -1.004 7.004 11 O -0.988 6.988 12 C -0.555 4.555 13 C 0.013 3.987 14 C -0.556 4.556 15 H 0.047 0.953 16 C 0.061 3.939 17 N -0.883 5.883 18 Si 0.926 3.074 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.191 4.191 23 C -0.142 4.142 24 C 0.080 3.920 25 H 0.082 0.918 26 C -0.163 4.163 27 O -0.394 6.394 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.422 0.578 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.267 0.733 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 13.296 5.977 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 H 0.094 0.906 4 C -0.184 4.184 5 C -0.139 4.139 6 H 0.117 0.883 7 C -0.005 4.005 8 N -0.877 5.877 9 S 2.732 3.268 10 O -0.994 6.994 11 O -0.978 6.978 12 C -0.688 4.688 13 C 0.011 3.989 14 C -0.594 4.594 15 H 0.065 0.935 16 C -0.144 4.144 17 N -0.518 5.518 18 Si 0.752 3.248 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.193 1.193 22 C -0.228 4.228 23 C -0.181 4.181 24 C 0.021 3.979 25 H 0.100 0.900 26 C -0.220 4.220 27 O -0.314 6.314 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.257 0.743 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.720 13.116 6.076 17.997 hybrid contribution 0.668 -0.516 0.005 0.844 sum -10.052 12.601 6.080 17.228 Atomic orbital electron populations 1.21893 0.92789 1.02834 1.03092 1.23112 0.95626 0.95621 0.84406 0.90639 1.23486 0.94440 1.01652 0.98869 1.22928 0.98972 0.97669 0.94372 0.88251 1.21357 1.00873 0.97782 0.80470 1.55494 1.75980 1.34167 1.22043 1.03942 0.75359 0.75035 0.72437 1.93439 1.86318 1.75761 1.43916 1.93469 1.49904 1.85345 1.69039 1.29845 1.13641 1.16091 1.09185 1.18342 0.92648 0.95679 0.92231 1.20765 0.90465 1.28703 1.19440 0.93477 1.25394 1.00768 0.93749 0.94526 1.69984 1.35637 1.32587 1.13562 0.85993 0.82144 0.78284 0.78426 1.19654 1.20397 1.19304 1.23210 1.02846 1.03719 0.92980 1.22469 0.99452 0.93354 1.02781 1.22706 0.85727 0.96591 0.92834 0.89982 1.22153 0.97169 1.01989 1.00723 1.88426 1.42407 1.65196 1.35378 0.92145 0.89479 0.92355 0.89485 0.87989 0.91309 0.90135 0.74258 0.85762 0.84537 0.92419 0.87989 0.90269 0.91858 0.89470 0.91753 0.91846 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.62 71.98 0.69 -1.30 16 2 C 0.07 1.12 4.07 31.26 0.13 1.25 16 3 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.15 -2.24 5.83 32.05 0.19 -2.05 16 5 C -0.12 -2.26 2.58 -9.54 -0.02 -2.28 16 6 H 0.10 1.80 7.85 -2.39 -0.02 1.78 16 7 C 0.12 2.92 5.44 86.38 0.47 3.39 16 8 N -1.12 -30.41 5.84 -187.50 -1.09 -31.50 16 9 S 2.63 106.09 4.63 -56.49 -0.26 105.82 16 10 O -1.00 -45.01 18.08 -127.65 -2.31 -47.32 16 11 O -0.99 -48.59 16.63 -127.65 -2.12 -50.71 16 12 C -0.55 -21.77 6.18 71.98 0.45 -21.32 16 13 C 0.01 0.61 1.64 -52.93 -0.09 0.53 16 14 C -0.56 -30.64 6.89 25.60 0.18 -30.47 16 15 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 16 C 0.06 3.35 5.39 84.65 0.46 3.80 16 17 N -0.88 -48.46 12.96 21.45 0.28 -48.18 16 18 Si 0.93 44.75 29.55 68.60 2.03 46.78 16 19 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 C -0.19 -7.84 9.88 30.59 0.30 -7.53 16 23 C -0.14 -6.20 9.50 30.59 0.29 -5.90 16 24 C 0.08 1.61 3.76 31.06 0.12 1.72 16 25 H 0.08 1.68 7.82 -2.39 -0.02 1.67 16 26 C -0.16 -3.09 9.44 71.98 0.68 -2.41 16 27 O -0.39 -8.50 10.70 -148.98 -1.59 -10.09 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.31 7.84 -2.38 -0.02 1.29 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.91 7.69 -2.38 -0.02 1.89 16 34 H 0.08 1.71 7.99 -2.39 -0.02 1.70 16 35 H 0.42 9.16 8.48 -96.75 -0.82 8.34 16 36 H 0.12 4.93 8.14 -2.39 -0.02 4.92 16 37 H 0.14 4.14 7.95 -2.39 -0.02 4.13 16 38 H 0.27 13.93 8.32 -92.70 -0.77 13.16 16 39 H 0.10 3.49 8.08 -2.39 -0.02 3.47 16 40 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -70.36 377.48 -1.10 -71.46 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.14 Total: 26.32 kcal Atomic # 6 Polarization: -66.40 SS G_CDS: 3.83 Total: -62.57 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -0.82 Total: -79.68 kcal Atomic # 8 Polarization: -102.10 SS G_CDS: -6.03 Total: -108.12 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 106.09 SS G_CDS: -0.26 Total: 105.82 kcal Total: -70.36 -1.10 -71.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563523257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.936 kcal (2) G-P(sol) polarization free energy of solvation -70.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds