Wall clock time and date at job start Tue Mar 31 2020 11:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35641 * 117.00071 * 2 1 4 4 C 1.40763 * 120.32893 * 359.97438 * 3 2 1 5 5 C 1.35012 * 120.03963 * 180.02562 * 4 3 2 6 6 N 1.36033 * 120.86073 * 0.24668 * 5 4 3 7 7 C 1.36663 * 120.88335 * 359.45134 * 6 5 4 8 8 C 1.37979 * 120.33222 * 179.97438 * 3 2 1 9 9 N 1.33334 * 108.60246 * 180.36026 * 7 6 5 10 10 C 1.32318 * 109.85855 * 0.26573 * 9 7 6 11 11 C 1.38509 * 108.25572 * 359.97438 * 10 9 7 12 12 C 1.41653 * 126.78438 * 179.97438 * 11 10 9 13 13 O 1.21801 * 119.99656 * 205.23006 * 12 11 10 14 14 N 1.34772 * 120.00210 * 25.23335 * 12 11 10 15 15 C 1.46500 * 119.99976 * 188.07283 * 14 12 11 16 16 C 1.50699 * 109.47047 * 89.99791 * 15 14 12 17 17 H 1.07998 * 120.00460 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99987 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00109 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47219 * 89.99949 * 20 18 16 22 22 H 1.48500 * 109.47340 * 209.99998 * 20 18 16 23 23 H 1.48493 * 109.47220 * 330.00062 * 20 18 16 24 24 C 1.46496 * 119.99970 * 8.06889 * 14 12 11 25 25 C 1.53001 * 109.46953 * 134.66279 * 24 14 12 26 26 C 1.53000 * 109.47377 * 254.66443 * 24 14 12 27 27 H 1.09005 * 109.47481 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47791 * 300.00014 * 1 2 3 29 29 H 1.09003 * 109.47024 * 60.00244 * 1 2 3 30 30 H 1.08002 * 119.98110 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.56773 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.38438 * 0.02562 * 8 3 2 33 33 H 1.07997 * 125.87660 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47175 * 209.99887 * 15 14 12 35 35 H 1.08997 * 109.47069 * 330.00123 * 15 14 12 36 36 H 0.96996 * 120.00153 * 180.02562 * 19 18 16 37 37 H 1.08999 * 109.47328 * 14.66455 * 24 14 12 38 38 H 1.09008 * 109.47354 * 60.00427 * 25 24 14 39 39 H 1.09006 * 109.47184 * 179.97438 * 25 24 14 40 40 H 1.08996 * 109.47292 * 300.00078 * 25 24 14 41 41 H 1.08999 * 109.47319 * 60.00078 * 26 24 14 42 42 H 1.08998 * 109.47018 * 180.02562 * 26 24 14 43 43 H 1.08999 * 109.46900 * 300.00273 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2849 2.3935 -0.0005 5 6 1.9040 3.5933 -0.0011 6 7 3.2616 3.6781 -0.0061 7 6 4.0348 2.5512 0.0005 8 6 3.4222 1.2887 0.0005 9 7 5.3175 2.9154 0.0014 10 6 5.4099 4.2354 0.0014 11 6 4.1280 4.7601 -0.0001 12 6 3.7728 6.1314 0.0000 13 8 2.6957 6.4814 0.4483 14 7 4.6265 7.0487 -0.4961 15 6 4.3406 8.4767 -0.3374 16 6 4.9521 8.9716 0.9479 17 1 5.4994 8.2907 1.5829 18 6 4.8129 10.2939 1.3133 19 7 4.1461 11.1230 0.5403 20 14 5.5703 10.9072 2.9069 21 1 6.9530 11.3826 2.6470 22 1 4.7550 12.0260 3.4441 23 1 5.6053 9.8006 3.8964 24 6 5.8403 6.6178 -1.1939 25 6 6.0071 7.4330 -2.4779 26 6 7.0542 6.8376 -0.2889 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2061 2.3428 -0.0014 31 1 1.3135 4.4976 -0.0019 32 1 4.0217 0.3904 0.0005 33 1 6.3270 4.8056 0.0025 34 1 4.7643 9.0276 -1.1771 35 1 3.2618 8.6304 -0.3093 36 1 4.0485 12.0532 0.7972 37 1 5.7599 5.5597 -1.4433 38 1 6.0876 8.4912 -2.2286 39 1 6.9105 7.1128 -2.9969 40 1 5.1423 7.2764 -3.1226 41 1 6.9354 6.2568 0.6258 42 1 7.9574 6.5174 -0.8083 43 1 7.1346 7.8957 -0.0396 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564852322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:18 Heat of formation + Delta-G solvation = 35.750776 kcal Electronic energy + Delta-G solvation = -26927.490884 eV Core-core repulsion = 23168.581091 eV Total energy + Delta-G solvation = -3758.909794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.86390 -39.92501 -38.98880 -36.67006 -35.94178 -33.19820 -32.84061 -30.94396 -30.56496 -29.67447 -27.76254 -26.93741 -26.62690 -24.20732 -23.50517 -22.46785 -22.03987 -21.09506 -19.16031 -18.22976 -17.35622 -17.15012 -16.48651 -16.40425 -16.26247 -15.68960 -15.27140 -14.96388 -14.69398 -14.28101 -14.14606 -13.99436 -13.51316 -13.29540 -13.00068 -12.83716 -12.45634 -12.26056 -12.17542 -11.88409 -11.71951 -11.61145 -11.46324 -11.23535 -10.98753 -10.83669 -10.61425 -10.39197 -10.22431 -10.08770 -10.03276 -9.57184 -9.17799 -8.89760 -8.43339 -7.81758 -7.49994 -6.05552 -4.09419 0.59271 0.90588 2.34642 2.50508 2.75232 3.29243 3.36422 3.40021 3.40850 3.79629 3.93324 4.23181 4.37713 4.44438 4.48260 4.70936 4.77312 4.81808 4.93939 5.09608 5.20210 5.26384 5.30822 5.36088 5.51611 5.54663 5.67063 5.74918 5.79858 6.02191 6.07535 6.18993 6.24201 6.31049 6.51439 6.60506 6.82986 6.89727 6.99028 7.10426 7.44014 7.52068 7.77560 7.91315 8.22066 8.34127 8.84318 9.00491 9.54947 11.02372 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.003521 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.319613 B = 7951.090465 C = 8523.378759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.150 3.850 4 C -0.220 4.220 5 C 0.126 3.874 6 N -0.342 5.342 7 C 0.268 3.732 8 C -0.145 4.145 9 N -0.502 5.502 10 C 0.089 3.911 11 C -0.127 4.127 12 C 0.584 3.416 13 O -0.556 6.556 14 N -0.576 5.576 15 C 0.244 3.756 16 C -0.523 4.523 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.119 3.881 25 C -0.159 4.159 26 C -0.173 4.173 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.159 0.841 33 H 0.203 0.797 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -18.918 -4.956 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.099 3.901 4 C -0.242 4.242 5 C 0.000 4.000 6 N -0.015 5.015 7 C 0.028 3.972 8 C -0.166 4.166 9 N -0.223 5.223 10 C -0.068 4.068 11 C -0.240 4.240 12 C 0.373 3.627 13 O -0.436 6.436 14 N -0.307 5.307 15 C 0.125 3.875 16 C -0.562 4.562 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.014 3.986 25 C -0.217 4.217 26 C -0.231 4.231 27 H 0.122 0.878 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.176 0.824 31 H 0.196 0.804 32 H 0.177 0.823 33 H 0.220 0.780 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.380 -19.172 -4.761 20.041 hybrid contribution -0.537 1.180 0.997 1.635 sum -3.917 -17.992 -3.764 18.795 Atomic orbital electron populations 1.23168 0.77686 1.04425 1.01807 1.86024 1.21843 1.25702 1.88227 1.18818 0.91560 0.84367 0.95400 1.21023 1.01503 0.90441 1.11197 1.21774 0.81782 1.00640 0.95799 1.42646 1.05920 1.08247 1.44648 1.20562 0.87056 0.86755 1.02852 1.19299 0.91177 0.94851 1.11285 1.70575 1.14035 1.13230 1.24424 1.23912 0.96585 0.90102 0.96180 1.20343 0.89692 0.89319 1.24596 1.15384 0.84925 0.82907 0.79525 1.90784 1.22862 1.81759 1.48228 1.48064 1.20826 1.08661 1.53156 1.19373 0.98267 0.72634 0.97182 1.21458 1.34197 0.94489 1.06085 0.92182 1.24918 0.95316 0.96723 0.97081 1.69927 1.41026 1.04773 1.37615 0.86539 0.78984 0.78499 0.83684 1.20600 1.21179 1.19899 1.21422 0.85715 0.98877 0.92553 1.22114 1.01153 1.02214 0.96234 1.22369 0.96368 1.05187 0.99138 0.87824 0.92195 0.92223 0.82384 0.80355 0.82315 0.78028 0.94003 0.93782 0.92753 0.89804 0.90619 0.92059 0.92825 0.92528 0.92375 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -2.88 10.49 -18.62 -0.20 -3.08 16 3 C 0.15 1.67 6.72 -38.72 -0.26 1.41 16 4 C -0.22 -2.31 8.98 -39.77 -0.36 -2.67 16 5 C 0.13 1.74 10.53 -16.84 -0.18 1.56 16 6 N -0.34 -5.70 2.97 -60.20 -0.18 -5.88 16 7 C 0.27 4.23 7.76 -156.00 -1.21 3.02 16 8 C -0.14 -1.86 10.09 -38.89 -0.39 -2.25 16 9 N -0.50 -8.47 11.25 -12.31 -0.14 -8.60 16 10 C 0.09 1.50 9.36 -17.24 -0.16 1.34 16 11 C -0.13 -2.37 6.27 -83.39 -0.52 -2.89 16 12 C 0.58 12.76 7.39 -14.96 -0.11 12.64 16 13 O -0.56 -13.89 15.35 5.10 0.08 -13.81 16 14 N -0.58 -12.21 2.38 -170.85 -0.41 -12.61 16 15 C 0.24 6.17 4.96 -5.19 -0.03 6.15 16 16 C -0.52 -14.27 8.04 -34.44 -0.28 -14.55 16 17 H 0.06 1.64 7.53 -52.49 -0.40 1.24 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.12 1.98 2.47 -67.93 -0.17 1.81 16 25 C -0.16 -2.43 8.79 37.16 0.33 -2.10 16 26 C -0.17 -2.71 7.92 37.16 0.29 -2.41 16 27 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.27 7.68 -51.93 -0.40 -0.13 16 29 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 30 H 0.16 1.09 6.39 -52.49 -0.34 0.75 16 31 H 0.18 2.49 7.15 -52.49 -0.38 2.12 16 32 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.20 3.04 3.71 -52.49 -0.19 2.84 16 34 H 0.04 1.06 5.81 -51.93 -0.30 0.75 16 35 H 0.04 1.27 7.33 -51.93 -0.38 0.89 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.08 1.29 4.67 -51.93 -0.24 1.05 16 38 H 0.07 1.30 6.42 -51.92 -0.33 0.97 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.89 6.64 -51.93 -0.34 0.54 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.61 7.00 -51.93 -0.36 1.25 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -33.82 348.09 -7.34 -41.16 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.31 Total: 2.50 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -2.15 Total: 3.80 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.01 Total: -52.32 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.12 Total: -16.89 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.82 -7.34 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564852322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.909 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds