Wall clock time and date at job start Tue Mar 31 2020 11:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35641 * 117.00071 * 2 1 4 4 C 1.40763 * 120.32893 * 359.97438 * 3 2 1 5 5 C 1.35012 * 120.03963 * 180.02562 * 4 3 2 6 6 N 1.36033 * 120.86073 * 0.24668 * 5 4 3 7 7 C 1.36663 * 120.88335 * 359.45134 * 6 5 4 8 8 C 1.37979 * 120.33222 * 179.97438 * 3 2 1 9 9 N 1.33334 * 108.60246 * 180.36026 * 7 6 5 10 10 C 1.32318 * 109.85855 * 0.26573 * 9 7 6 11 11 C 1.38509 * 108.25572 * 359.97438 * 10 9 7 12 12 C 1.41653 * 126.78438 * 179.97438 * 11 10 9 13 13 O 1.21801 * 119.99656 * 205.23006 * 12 11 10 14 14 N 1.34772 * 120.00210 * 25.23335 * 12 11 10 15 15 C 1.46500 * 119.99976 * 188.07283 * 14 12 11 16 16 C 1.50699 * 109.47047 * 89.99791 * 15 14 12 17 17 H 1.07998 * 120.00460 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99987 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00109 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47219 * 89.99949 * 20 18 16 22 22 H 1.48500 * 109.47340 * 209.99998 * 20 18 16 23 23 H 1.48493 * 109.47220 * 330.00062 * 20 18 16 24 24 C 1.46496 * 119.99970 * 8.06889 * 14 12 11 25 25 C 1.53001 * 109.46953 * 134.66279 * 24 14 12 26 26 C 1.53000 * 109.47377 * 254.66443 * 24 14 12 27 27 H 1.09005 * 109.47481 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47791 * 300.00014 * 1 2 3 29 29 H 1.09003 * 109.47024 * 60.00244 * 1 2 3 30 30 H 1.08002 * 119.98110 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.56773 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.38438 * 0.02562 * 8 3 2 33 33 H 1.07997 * 125.87660 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47175 * 209.99887 * 15 14 12 35 35 H 1.08997 * 109.47069 * 330.00123 * 15 14 12 36 36 H 0.96996 * 120.00153 * 180.02562 * 19 18 16 37 37 H 1.08999 * 109.47328 * 14.66455 * 24 14 12 38 38 H 1.09008 * 109.47354 * 60.00427 * 25 24 14 39 39 H 1.09006 * 109.47184 * 179.97438 * 25 24 14 40 40 H 1.08996 * 109.47292 * 300.00078 * 25 24 14 41 41 H 1.08999 * 109.47319 * 60.00078 * 26 24 14 42 42 H 1.08998 * 109.47018 * 180.02562 * 26 24 14 43 43 H 1.08999 * 109.46900 * 300.00273 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2849 2.3935 -0.0005 5 6 1.9040 3.5933 -0.0011 6 7 3.2616 3.6781 -0.0061 7 6 4.0348 2.5512 0.0005 8 6 3.4222 1.2887 0.0005 9 7 5.3175 2.9154 0.0014 10 6 5.4099 4.2354 0.0014 11 6 4.1280 4.7601 -0.0001 12 6 3.7728 6.1314 0.0000 13 8 2.6957 6.4814 0.4483 14 7 4.6265 7.0487 -0.4961 15 6 4.3406 8.4767 -0.3374 16 6 4.9521 8.9716 0.9479 17 1 5.4994 8.2907 1.5829 18 6 4.8129 10.2939 1.3133 19 7 4.1461 11.1230 0.5403 20 14 5.5703 10.9072 2.9069 21 1 6.9530 11.3826 2.6470 22 1 4.7550 12.0260 3.4441 23 1 5.6053 9.8006 3.8964 24 6 5.8403 6.6178 -1.1939 25 6 6.0071 7.4330 -2.4779 26 6 7.0542 6.8376 -0.2889 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2061 2.3428 -0.0014 31 1 1.3135 4.4976 -0.0019 32 1 4.0217 0.3904 0.0005 33 1 6.3270 4.8056 0.0025 34 1 4.7643 9.0276 -1.1771 35 1 3.2618 8.6304 -0.3093 36 1 4.0485 12.0532 0.7972 37 1 5.7599 5.5597 -1.4433 38 1 6.0876 8.4912 -2.2286 39 1 6.9105 7.1128 -2.9969 40 1 5.1423 7.2764 -3.1226 41 1 6.9354 6.2568 0.6258 42 1 7.9574 6.5174 -0.8083 43 1 7.1346 7.8957 -0.0396 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564852322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:18 Heat of formation + Delta-G solvation = 14.146888 kcal Electronic energy + Delta-G solvation = -26928.427699 eV Core-core repulsion = 23168.581091 eV Total energy + Delta-G solvation = -3759.846608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.06328 -41.01689 -40.34190 -37.98943 -37.28733 -34.98098 -34.22469 -32.54937 -31.68594 -30.98593 -29.03117 -28.22301 -27.79472 -25.58229 -24.83312 -24.09153 -23.16514 -22.47806 -20.57261 -19.15111 -18.68361 -18.56789 -18.25160 -17.66969 -17.33544 -16.88918 -16.58850 -16.24432 -15.99646 -15.82649 -15.52467 -15.28150 -14.88307 -14.45544 -14.32897 -14.26145 -13.61773 -13.52975 -13.40144 -13.26714 -13.08916 -12.84224 -12.75955 -12.71131 -12.44790 -12.35534 -12.21362 -12.14158 -11.75394 -11.55866 -11.47441 -11.05532 -10.79949 -10.58551 -10.05724 -9.52824 -8.74265 -8.18406 -6.30848 -0.46887 -0.24311 1.13190 1.27551 1.38044 1.40201 1.50418 1.98394 2.22177 2.31586 2.34030 2.48351 3.11145 3.20502 3.34181 3.42014 3.72922 3.89478 3.91765 3.96456 4.15498 4.23918 4.34137 4.37911 4.43057 4.48438 4.71859 4.80549 4.82376 4.85041 4.86613 4.94560 5.01942 5.09811 5.12980 5.22480 5.29029 5.41256 5.56700 5.64144 5.78956 5.86009 6.10766 6.12434 6.52403 6.66792 6.77192 7.22770 7.41036 8.88476 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.003521 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.319613 B = 7951.090465 C = 8523.378759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.173 3.827 4 C -0.188 4.188 5 C 0.094 3.906 6 N -0.348 5.348 7 C 0.268 3.732 8 C -0.159 4.159 9 N -0.520 5.520 10 C 0.106 3.894 11 C -0.169 4.169 12 C 0.581 3.419 13 O -0.605 6.605 14 N -0.581 5.581 15 C 0.262 3.738 16 C -0.531 4.531 17 H 0.056 0.944 18 C 0.010 3.990 19 N -0.928 5.928 20 Si 0.961 3.039 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.275 1.275 24 C 0.113 3.887 25 C -0.154 4.154 26 C -0.167 4.167 27 H 0.127 0.873 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.200 0.800 31 H 0.168 0.832 32 H 0.177 0.823 33 H 0.217 0.783 34 H 0.039 0.961 35 H -0.003 1.003 36 H 0.266 0.734 37 H 0.104 0.896 38 H 0.050 0.950 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.100 0.900 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 -21.813 -4.902 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.221 6.221 3 C 0.120 3.880 4 C -0.209 4.209 5 C -0.031 4.031 6 N -0.020 5.020 7 C 0.029 3.971 8 C -0.181 4.181 9 N -0.241 5.241 10 C -0.052 4.052 11 C -0.281 4.281 12 C 0.372 3.628 13 O -0.489 6.489 14 N -0.310 5.310 15 C 0.142 3.858 16 C -0.570 4.570 17 H 0.074 0.926 18 C -0.189 4.189 19 N -0.568 5.568 20 Si 0.786 3.214 21 H -0.188 1.188 22 H -0.209 1.209 23 H -0.200 1.200 24 C 0.011 3.989 25 C -0.212 4.212 26 C -0.225 4.225 27 H 0.145 0.855 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.217 0.783 31 H 0.186 0.814 32 H 0.194 0.806 33 H 0.233 0.767 34 H 0.057 0.943 35 H 0.015 0.985 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.070 -22.108 -4.731 22.816 hybrid contribution -0.841 1.798 0.934 2.193 sum -3.912 -20.310 -3.797 21.029 Atomic orbital electron populations 1.23600 0.75132 1.06619 1.03149 1.86063 1.24359 1.24360 1.87303 1.18869 0.91194 0.85252 0.92682 1.21458 1.03361 0.88777 1.07287 1.21980 0.81053 1.01792 0.98275 1.42701 1.06745 1.07791 1.44811 1.21022 0.86943 0.87383 1.01757 1.19557 0.92336 0.94178 1.11993 1.70589 1.14752 1.12894 1.25863 1.24081 0.96287 0.90286 0.94592 1.19831 0.90970 0.88253 1.29054 1.15785 0.84168 0.84319 0.78542 1.90730 1.24913 1.82780 1.50491 1.48027 1.22458 1.06988 1.53557 1.18831 0.95011 0.75384 0.96582 1.21675 1.33945 0.94701 1.06639 0.92592 1.25761 0.95763 0.96956 1.00389 1.70046 1.42230 1.05120 1.39393 0.85509 0.78821 0.77682 0.79376 1.18812 1.20925 1.20023 1.21762 0.84204 1.00052 0.92920 1.22084 1.02922 1.00408 0.95749 1.22314 0.97542 1.03265 0.99363 0.85473 0.90943 0.90708 0.78320 0.81437 0.80614 0.76697 0.94312 0.98532 0.92556 0.87892 0.93126 0.88140 0.93196 0.92817 0.88176 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.17 16 2 O -0.31 -4.57 10.49 -89.55 -0.94 -5.51 16 3 C 0.17 3.30 6.72 22.83 0.15 3.46 16 4 C -0.19 -3.44 8.98 22.14 0.20 -3.24 16 5 C 0.09 2.59 10.53 83.30 0.88 3.46 16 6 N -0.35 -11.68 2.97 -344.36 -1.02 -12.70 16 7 C 0.27 8.23 7.76 133.85 1.04 9.27 16 8 C -0.16 -3.73 10.09 22.72 0.23 -3.51 16 9 N -0.52 -17.12 11.25 -192.87 -2.17 -19.29 16 10 C 0.11 3.55 9.36 84.68 0.79 4.35 16 11 C -0.17 -6.49 6.27 38.98 0.24 -6.25 16 12 C 0.58 26.80 7.39 85.09 0.63 27.43 16 13 O -0.60 -32.44 15.35 -4.67 -0.07 -32.51 16 14 N -0.58 -25.83 2.38 -812.62 -1.94 -27.77 16 15 C 0.26 14.12 4.96 85.63 0.42 14.55 16 16 C -0.53 -30.15 8.04 25.60 0.21 -29.94 16 17 H 0.06 3.15 7.53 -2.91 -0.02 3.13 16 18 C 0.01 0.58 5.46 84.66 0.46 1.04 16 19 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 20 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 C 0.11 3.78 2.47 44.99 0.11 3.89 16 25 C -0.15 -4.66 8.79 71.98 0.63 -4.02 16 26 C -0.17 -5.12 7.92 71.98 0.57 -4.55 16 27 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.07 0.31 7.68 -2.39 -0.02 0.29 16 29 H 0.07 0.28 7.68 -2.39 -0.02 0.26 16 30 H 0.20 1.89 6.39 -2.91 -0.02 1.88 16 31 H 0.17 4.94 7.15 -2.91 -0.02 4.92 16 32 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.22 6.30 3.71 -2.91 -0.01 6.29 16 34 H 0.04 2.09 5.81 -2.39 -0.01 2.07 16 35 H 0.00 -0.21 7.33 -2.39 -0.02 -0.23 16 36 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.10 3.10 4.67 -2.39 -0.01 3.08 16 38 H 0.05 1.78 6.42 -2.38 -0.02 1.77 16 39 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.66 6.64 -2.39 -0.02 1.65 16 42 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.06 2.16 7.00 -2.39 -0.02 2.14 16 Total: -1.00 -78.29 348.09 4.90 -73.38 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.05 Total: 15.73 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 7.68 Total: 17.11 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -4.84 Total: -115.16 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.01 Total: -38.02 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -78.29 4.90 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564852322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.530 kcal (2) G-P(sol) polarization free energy of solvation -78.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds