Wall clock time and date at job start Tue Mar 31 2020 12:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 S 1.81401 * 109.47402 * 120.00236 * 2 1 3 5 5 O 1.42107 * 108.57731 * 70.50920 * 4 2 1 6 6 O 1.42100 * 108.57564 * 299.48949 * 4 2 1 7 7 C 1.81399 * 101.92601 * 184.99993 * 4 2 1 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 4 2 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 4 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47133 * 60.00060 * 19 17 15 21 21 H 1.48503 * 109.46942 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47295 * 299.99976 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.09003 * 109.47340 * 299.99946 * 1 2 3 26 26 H 1.09002 * 109.47192 * 60.00206 * 1 2 3 27 27 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47340 * 240.00054 * 2 1 3 29 29 H 1.09000 * 109.47297 * 300.00110 * 3 2 1 30 30 H 1.09003 * 109.46847 * 59.99752 * 3 2 1 31 31 H 1.08998 * 109.47692 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46570 * 59.99789 * 7 4 2 33 33 H 1.09001 * 109.47092 * 300.00037 * 7 4 2 34 34 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 35 35 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 36 36 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 37 37 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 38 38 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 39 39 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 40 40 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 41 41 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 43 43 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 44 44 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 45 45 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4811 5 8 1.8619 -2.2432 1.3455 6 8 1.6604 -0.1637 2.6284 7 6 3.9266 -0.6032 1.3540 8 6 4.6104 -1.2591 2.5258 9 8 3.9536 -1.8399 3.3638 10 7 5.9518 -1.2004 2.6425 11 6 6.6328 -1.8345 3.7795 12 6 7.7170 -2.7762 3.2459 13 6 8.6461 -1.9944 2.3094 14 6 9.7510 -2.9213 1.7988 15 6 10.6165 -3.3550 2.9537 16 1 10.4004 -3.0043 3.9520 17 6 11.6843 -4.1996 2.7358 18 7 11.9478 -4.6263 1.5201 19 14 12.7576 -4.7366 4.1673 20 1 11.9274 -5.4580 5.1651 21 1 13.8300 -5.6364 3.6716 22 1 13.3691 -3.5419 4.8030 23 6 7.8440 -1.4552 1.1228 24 6 6.7609 -0.5001 1.6356 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 4.1444 0.4648 1.3579 33 1 4.2907 -1.0449 0.4265 34 1 7.0902 -1.0681 4.4052 35 1 5.9116 -2.4030 4.3665 36 1 8.2911 -3.1797 4.0799 37 1 7.2504 -3.5934 2.6957 38 1 9.0928 -1.1624 2.8538 39 1 9.3026 -3.7980 1.3314 40 1 10.3605 -2.3913 1.0669 41 1 12.6993 -5.2203 1.3667 42 1 7.3765 -2.2848 0.5926 43 1 8.5100 -0.9199 0.4460 44 1 6.1245 -0.1901 0.8067 45 1 7.2265 0.3764 2.0863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565018584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:37 Heat of formation + Delta-G solvation = -124.354394 kcal Electronic energy + Delta-G solvation = -25306.934262 eV Core-core repulsion = 21644.232988 eV Total energy + Delta-G solvation = -3662.701274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23565 -37.57243 -37.19042 -36.17307 -35.53521 -34.18930 -32.32718 -31.54500 -30.15928 -28.13129 -27.58671 -24.72389 -23.22303 -22.82023 -22.01444 -20.17391 -18.99202 -18.80034 -17.85816 -16.81322 -16.70745 -16.33146 -16.25812 -15.56118 -15.32271 -14.84927 -14.57209 -14.06281 -13.81567 -13.73628 -13.56796 -13.53609 -13.22523 -12.98021 -12.86287 -12.64600 -12.31602 -12.21164 -12.13788 -11.98478 -11.93829 -11.91335 -11.27126 -11.22557 -11.11137 -10.83356 -10.73093 -10.56509 -10.49776 -10.33495 -10.08186 -9.71064 -9.35468 -9.04584 -8.54797 -8.38562 -6.03668 -4.05829 -0.39741 2.34823 2.44773 2.79121 3.30825 3.35803 3.37881 3.47386 3.65934 4.03284 4.07506 4.14098 4.42623 4.53938 4.60971 4.71882 4.91015 4.94844 5.02343 5.10645 5.21014 5.24725 5.28866 5.32635 5.47037 5.49364 5.52933 5.54094 5.71141 5.86040 5.96795 6.20608 6.24265 6.42248 6.51167 6.88352 6.93409 7.03736 7.27585 7.60371 7.74588 7.89711 7.95103 8.37526 9.00220 9.58410 11.07562 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032563 B = 0.002646 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.657490 B =10581.275332 C =10857.562574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.584 4.584 3 C -0.149 4.149 4 S 2.450 3.550 5 O -0.919 6.919 6 O -0.918 6.918 7 C -0.661 4.661 8 C 0.541 3.459 9 O -0.538 6.538 10 N -0.592 5.592 11 C 0.105 3.895 12 C -0.119 4.119 13 C -0.082 4.082 14 C 0.028 3.972 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.132 4.132 24 C 0.102 3.898 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.138 0.862 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.084 14.234 -6.440 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.692 4.692 3 C -0.207 4.207 4 S 2.627 3.373 5 O -0.916 6.916 6 O -0.915 6.915 7 C -0.788 4.788 8 C 0.326 3.674 9 O -0.417 6.417 10 N -0.324 5.324 11 C -0.016 4.016 12 C -0.157 4.157 13 C -0.101 4.101 14 C -0.009 4.009 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.170 4.170 24 C -0.021 4.021 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.156 0.844 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.731 13.370 -5.449 24.450 hybrid contribution 1.425 0.105 -0.236 1.448 sum -18.306 13.475 -5.686 23.431 Atomic orbital electron populations 1.21630 0.89607 1.04057 1.04774 1.30199 1.07448 1.09887 1.21711 1.21783 1.01520 0.92165 1.05188 1.07675 0.76578 0.76061 0.77009 1.93587 1.82113 1.29598 1.86346 1.93561 1.77258 1.75696 1.45023 1.30910 1.28231 1.11875 1.07764 1.19036 0.83081 0.80193 0.85082 1.90837 1.63850 1.44299 1.42678 1.48034 1.04825 1.53640 1.25892 1.21925 0.95634 0.96771 0.87257 1.21979 0.95422 0.97337 1.00983 1.21267 0.95929 0.98728 0.94130 1.19114 0.91709 0.93711 0.96321 1.21189 1.11948 1.28323 0.94192 0.92613 1.25013 0.97620 0.96275 0.95506 1.69939 1.29368 1.34139 1.20072 0.86694 0.80205 0.78573 0.82742 1.20207 1.21353 1.20286 1.22065 0.96741 0.98707 0.99511 1.21970 0.93758 0.95571 0.90796 0.90533 0.89925 0.90813 0.84360 0.90031 0.90277 0.91095 0.82291 0.82194 0.91295 0.89196 0.89398 0.92137 0.92188 0.96606 0.96608 0.92951 0.91799 0.90761 0.90367 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.19 37.15 0.34 -0.51 16 2 C -0.58 -3.40 3.35 -26.74 -0.09 -3.49 16 3 C -0.15 -0.61 8.90 37.16 0.33 -0.28 16 4 S 2.45 26.68 3.50 -107.50 -0.38 26.31 16 5 O -0.92 -13.84 17.95 -59.52 -1.07 -14.91 16 6 O -0.92 -13.04 17.91 -59.54 -1.07 -14.11 16 7 C -0.66 -5.96 4.03 36.00 0.15 -5.81 16 8 C 0.54 7.92 7.72 -10.99 -0.08 7.83 16 9 O -0.54 -10.08 15.04 2.55 0.04 -10.04 16 10 N -0.59 -8.32 2.97 -172.74 -0.51 -8.83 16 11 C 0.11 1.63 6.42 -3.71 -0.02 1.60 16 12 C -0.12 -2.12 5.21 -26.45 -0.14 -2.26 16 13 C -0.08 -1.51 2.10 -90.42 -0.19 -1.70 16 14 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 15 C -0.52 -13.89 8.39 -34.44 -0.29 -14.17 16 16 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.31 13.28 55.43 0.74 -25.58 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.13 -1.91 5.37 -26.59 -0.14 -2.05 16 24 C 0.10 1.15 6.34 -3.68 -0.02 1.13 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.14 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.15 6.39 -51.93 -0.33 -0.18 16 32 H 0.16 0.81 6.57 -51.92 -0.34 0.46 16 33 H 0.16 0.92 7.69 -51.92 -0.40 0.52 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.46 7.00 -51.93 -0.36 1.09 16 36 H 0.09 1.67 6.93 -51.93 -0.36 1.31 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -37.44 368.32 -9.63 -47.08 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -7.53 Total: -4.03 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -0.39 Total: -17.65 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.22 Total: -34.41 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -2.10 Total: -39.06 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 26.68 SS G_CDS: -0.38 Total: 26.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.44 -9.63 -47.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565018584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.277 kcal (2) G-P(sol) polarization free energy of solvation -37.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds