Wall clock time and date at job start Tue Mar 31 2020 12:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 S 1.81401 * 109.47402 * 120.00236 * 2 1 3 5 5 O 1.42107 * 108.57731 * 70.50920 * 4 2 1 6 6 O 1.42100 * 108.57564 * 299.48949 * 4 2 1 7 7 C 1.81399 * 101.92601 * 184.99993 * 4 2 1 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 4 2 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 4 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47133 * 60.00060 * 19 17 15 21 21 H 1.48503 * 109.46942 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47295 * 299.99976 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.09003 * 109.47340 * 299.99946 * 1 2 3 26 26 H 1.09002 * 109.47192 * 60.00206 * 1 2 3 27 27 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47340 * 240.00054 * 2 1 3 29 29 H 1.09000 * 109.47297 * 300.00110 * 3 2 1 30 30 H 1.09003 * 109.46847 * 59.99752 * 3 2 1 31 31 H 1.08998 * 109.47692 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46570 * 59.99789 * 7 4 2 33 33 H 1.09001 * 109.47092 * 300.00037 * 7 4 2 34 34 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 35 35 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 36 36 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 37 37 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 38 38 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 39 39 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 40 40 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 41 41 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 43 43 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 44 44 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 45 45 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4811 5 8 1.8619 -2.2432 1.3455 6 8 1.6604 -0.1637 2.6284 7 6 3.9266 -0.6032 1.3540 8 6 4.6104 -1.2591 2.5258 9 8 3.9536 -1.8399 3.3638 10 7 5.9518 -1.2004 2.6425 11 6 6.6328 -1.8345 3.7795 12 6 7.7170 -2.7762 3.2459 13 6 8.6461 -1.9944 2.3094 14 6 9.7510 -2.9213 1.7988 15 6 10.6165 -3.3550 2.9537 16 1 10.4004 -3.0043 3.9520 17 6 11.6843 -4.1996 2.7358 18 7 11.9478 -4.6263 1.5201 19 14 12.7576 -4.7366 4.1673 20 1 11.9274 -5.4580 5.1651 21 1 13.8300 -5.6364 3.6716 22 1 13.3691 -3.5419 4.8030 23 6 7.8440 -1.4552 1.1228 24 6 6.7609 -0.5001 1.6356 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 4.1444 0.4648 1.3579 33 1 4.2907 -1.0449 0.4265 34 1 7.0902 -1.0681 4.4052 35 1 5.9116 -2.4030 4.3665 36 1 8.2911 -3.1797 4.0799 37 1 7.2504 -3.5934 2.6957 38 1 9.0928 -1.1624 2.8538 39 1 9.3026 -3.7980 1.3314 40 1 10.3605 -2.3913 1.0669 41 1 12.6993 -5.2203 1.3667 42 1 7.3765 -2.2848 0.5926 43 1 8.5100 -0.9199 0.4460 44 1 6.1245 -0.1901 0.8067 45 1 7.2265 0.3764 2.0863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565018584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:36 Heat of formation + Delta-G solvation = -152.199877 kcal Electronic energy + Delta-G solvation = -25308.141733 eV Core-core repulsion = 21644.232988 eV Total energy + Delta-G solvation = -3663.908745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37349 -38.87802 -38.07658 -37.04910 -36.01742 -35.75750 -34.11061 -32.65649 -31.20666 -29.65138 -28.09871 -26.34975 -24.24795 -23.72904 -23.39525 -21.50979 -20.15268 -19.65316 -18.74874 -18.42531 -17.65052 -17.57464 -17.19828 -16.55095 -16.41607 -16.29687 -15.45817 -15.28248 -15.00307 -14.72090 -14.57648 -14.41698 -14.19848 -14.09884 -13.92606 -13.64748 -13.42478 -13.16055 -13.13550 -13.03177 -13.01294 -12.78461 -12.49248 -12.37635 -12.33417 -12.30652 -12.16006 -11.96963 -11.81437 -11.39771 -11.31157 -11.11017 -11.05865 -10.81118 -10.52130 -9.75245 -8.17818 -6.26454 -1.13087 1.30318 1.39866 1.41615 1.48970 1.74130 1.79811 2.41351 2.71220 3.00630 3.16013 3.26665 3.60899 3.64702 3.88833 3.96981 4.01770 4.08517 4.16593 4.18546 4.23561 4.39709 4.53662 4.65663 4.66637 4.67488 4.78893 4.80092 4.86460 4.91762 4.94932 5.08578 5.13959 5.26485 5.30433 5.32764 5.37273 5.50371 5.56867 5.80604 5.90187 6.21030 6.29794 6.82945 6.90379 7.42083 8.93599 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032563 B = 0.002646 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.657490 B =10581.275332 C =10857.562574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.541 4.541 3 C -0.160 4.160 4 S 2.419 3.581 5 O -0.982 6.982 6 O -0.971 6.971 7 C -0.650 4.650 8 C 0.526 3.474 9 O -0.592 6.592 10 N -0.594 5.594 11 C 0.111 3.889 12 C -0.112 4.112 13 C -0.075 4.075 14 C 0.033 3.967 15 C -0.530 4.530 16 H 0.061 0.939 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.955 3.045 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.129 4.129 24 C 0.102 3.898 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.174 0.826 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.209 0.791 33 H 0.203 0.797 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.066 0.934 39 H -0.017 1.017 40 H -0.005 1.005 41 H 0.261 0.739 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.202 17.375 -8.209 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.655 4.655 3 C -0.218 4.218 4 S 2.604 3.396 5 O -0.979 6.979 6 O -0.968 6.968 7 C -0.778 4.778 8 C 0.314 3.686 9 O -0.474 6.474 10 N -0.325 5.325 11 C -0.011 4.011 12 C -0.150 4.150 13 C -0.094 4.094 14 C -0.004 4.004 15 C -0.568 4.568 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.781 3.219 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.167 4.167 24 C -0.019 4.019 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.192 0.808 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.226 0.774 33 H 0.220 0.780 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.002 0.998 40 H 0.014 0.986 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.147 0.853 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.847 16.507 -7.179 26.794 hybrid contribution 1.458 -0.845 0.228 1.700 sum -18.389 15.662 -6.951 25.135 Atomic orbital electron populations 1.21842 0.89899 1.04026 1.05906 1.29889 1.07001 1.10654 1.17955 1.22025 1.03599 0.90219 1.05988 1.08182 0.77563 0.75267 0.78571 1.93511 1.83326 1.33483 1.87618 1.93493 1.78453 1.75831 1.49025 1.30851 1.25523 1.14689 1.06741 1.19948 0.83048 0.79625 0.85993 1.90823 1.64980 1.46558 1.45066 1.48149 1.05103 1.53387 1.25859 1.21696 0.94491 0.96770 0.88144 1.21826 0.95854 0.97370 0.99987 1.21123 0.94799 0.97556 0.95915 1.19014 0.92878 0.93469 0.95043 1.21666 1.12075 1.27873 0.95219 0.92045 1.25898 0.99293 0.96595 0.98044 1.70071 1.30156 1.35125 1.22192 0.85649 0.78344 0.78441 0.79515 1.19672 1.21220 1.19028 1.21998 0.97553 0.99382 0.97764 1.22245 0.93300 0.94633 0.91754 0.91263 0.86865 0.91643 0.80805 0.87686 0.91031 0.88143 0.77391 0.78022 0.89434 0.90779 0.91406 0.94205 0.91571 0.99847 0.98642 0.92999 0.92758 0.89277 0.85282 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.19 71.98 0.66 -0.84 16 2 C -0.54 -4.22 3.35 30.59 0.10 -4.12 16 3 C -0.16 -0.45 8.90 71.98 0.64 0.19 16 4 S 2.42 50.36 3.50 -56.49 -0.20 50.16 16 5 O -0.98 -30.70 17.95 -125.76 -2.26 -32.96 16 6 O -0.97 -28.31 17.91 -125.74 -2.25 -30.56 16 7 C -0.65 -9.18 4.03 71.24 0.29 -8.90 16 8 C 0.53 14.60 7.72 87.66 0.68 15.27 16 9 O -0.59 -22.88 15.04 -0.15 0.00 -22.89 16 10 N -0.59 -15.34 2.97 -818.81 -2.43 -17.78 16 11 C 0.11 3.40 6.42 86.36 0.55 3.95 16 12 C -0.11 -4.07 5.21 30.78 0.16 -3.91 16 13 C -0.08 -2.74 2.10 -10.66 -0.02 -2.76 16 14 C 0.03 1.63 4.45 29.85 0.13 1.77 16 15 C -0.53 -28.91 8.39 25.60 0.21 -28.70 16 16 H 0.06 3.20 7.06 -2.91 -0.02 3.18 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.93 -56.20 13.28 21.45 0.28 -55.92 16 19 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 C -0.13 -3.40 5.37 30.69 0.16 -3.24 16 24 C 0.10 1.82 6.34 86.38 0.55 2.37 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.17 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 -0.29 6.39 -2.39 -0.02 -0.31 16 32 H 0.21 0.76 6.57 -2.39 -0.02 0.74 16 33 H 0.20 1.12 7.69 -2.39 -0.02 1.10 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 2.50 7.00 -2.39 -0.02 2.48 16 36 H 0.07 2.68 6.93 -2.39 -0.02 2.66 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.13 1.05 5.93 -2.39 -0.01 1.04 16 45 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -90.55 368.32 0.71 -89.84 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 0.96 Total: 2.64 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 4.58 Total: -28.49 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -2.15 Total: -73.70 kcal Atomic # 8 Polarization: -81.90 SS G_CDS: -4.51 Total: -86.41 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 50.36 SS G_CDS: -0.20 Total: 50.16 kcal Total: -90.55 0.71 -89.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565018584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.359 kcal (2) G-P(sol) polarization free energy of solvation -90.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds