Wall clock time and date at job start Tue Mar 31 2020 12:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46924 * 2 1 4 4 S 1.81401 * 109.47480 * 179.97438 * 3 2 1 5 5 O 1.42107 * 108.57731 * 65.50754 * 4 3 2 6 6 O 1.42100 * 108.57564 * 294.48783 * 4 3 2 7 7 C 1.81399 * 101.92601 * 179.97438 * 4 3 2 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 4 3 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 4 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47056 * 90.00284 * 19 17 15 21 21 H 1.48503 * 109.47155 * 209.99821 * 19 17 15 22 22 H 1.48497 * 109.47425 * 330.00030 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.09002 * 109.46708 * 60.00436 * 1 2 3 26 26 H 1.08997 * 109.46928 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47542 * 300.00221 * 1 2 3 28 28 H 1.08992 * 109.47280 * 240.00207 * 2 1 3 29 29 H 1.08998 * 109.47191 * 119.99473 * 2 1 3 30 30 H 1.08996 * 109.47192 * 59.99564 * 3 2 1 31 31 H 1.09009 * 109.47230 * 299.99683 * 3 2 1 32 32 H 1.09001 * 109.46570 * 59.99789 * 7 4 3 33 33 H 1.09001 * 109.47092 * 300.00037 * 7 4 3 34 34 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 35 35 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 36 36 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 37 37 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 38 38 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 39 39 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 40 40 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 41 41 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 43 43 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 44 44 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 45 45 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4427 0.0008 5 8 4.3073 0.8841 -1.2248 6 8 4.3062 0.8846 1.2269 7 6 4.2287 3.2176 -0.0001 8 6 5.7226 3.4156 0.0010 9 8 6.4617 2.4541 0.0018 10 7 6.2373 4.6612 0.0011 11 6 7.6915 4.8704 0.0028 12 6 8.0616 5.7907 -1.1646 13 6 7.2380 7.0806 -1.0690 14 6 7.6268 8.0185 -2.2136 15 6 9.0627 8.4450 -2.0478 16 1 9.6401 8.0837 -1.2097 17 6 9.6392 9.2966 -2.9663 18 7 8.9361 9.7370 -3.9866 19 14 11.4188 9.8259 -2.7604 20 1 12.3055 8.8658 -3.4656 21 1 11.6014 11.1827 -3.3358 22 1 11.7643 9.8500 -1.3164 23 6 5.7477 6.7469 -1.1671 24 6 5.3546 5.8359 0.0007 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8901 32 1 3.8005 3.6797 0.8894 33 1 3.8013 3.6787 -0.8906 34 1 7.9931 5.3329 0.9426 35 1 8.1985 3.9124 -0.1121 36 1 9.1242 6.0291 -1.1172 37 1 7.8426 5.2888 -2.1071 38 1 7.4387 7.5689 -0.1153 39 1 7.5095 7.4990 -3.1647 40 1 6.9825 8.8975 -2.1979 41 1 9.3415 10.3364 -4.6325 42 1 5.5505 6.2363 -2.1096 43 1 5.1647 7.6669 -1.1228 44 1 4.3197 5.5152 -0.1181 45 1 5.4642 6.3755 0.9414 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567945871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:41 Heat of formation + Delta-G solvation = -127.560676 kcal Electronic energy + Delta-G solvation = -24932.315178 eV Core-core repulsion = 21269.474868 eV Total energy + Delta-G solvation = -3662.840309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23768 -37.57618 -37.14385 -36.18743 -35.29137 -34.20051 -32.33065 -31.52877 -30.11914 -28.23701 -27.86202 -24.73335 -23.03669 -22.45905 -21.94025 -20.17108 -19.10030 -18.80742 -17.73380 -16.76110 -16.71146 -16.38647 -16.26124 -15.77801 -15.33180 -15.05223 -14.57247 -14.07435 -14.01148 -13.69377 -13.57210 -13.26142 -13.02743 -13.02218 -12.97712 -12.64886 -12.32261 -12.19516 -12.13085 -11.97116 -11.93131 -11.39763 -11.29113 -11.24572 -11.10885 -10.85619 -10.74891 -10.70964 -10.49320 -10.33717 -10.08340 -9.71655 -9.35952 -9.03832 -8.55195 -8.39104 -6.04035 -4.06109 -0.40381 2.34536 2.47024 2.78651 3.29446 3.36279 3.38630 3.46098 3.70290 4.05278 4.14390 4.19358 4.42394 4.56069 4.63123 4.74324 4.86903 4.91620 5.04602 5.14586 5.20642 5.28488 5.32332 5.46698 5.47350 5.49337 5.53589 5.67632 5.70765 5.85670 5.96388 6.20184 6.23902 6.41850 6.50745 6.87968 6.92992 7.03385 7.27249 7.60283 7.74224 7.89304 7.94813 8.37245 9.00120 9.58178 11.07179 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032738 B = 0.002487 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.078304 B =11254.817970 C =11589.841285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.620 4.620 4 S 2.450 3.550 5 O -0.918 6.918 6 O -0.921 6.921 7 C -0.660 4.660 8 C 0.540 3.460 9 O -0.538 6.538 10 N -0.592 5.592 11 C 0.106 3.894 12 C -0.119 4.119 13 C -0.082 4.082 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.132 4.132 24 C 0.102 3.898 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 -13.560 9.695 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.749 4.749 4 S 2.627 3.373 5 O -0.915 6.915 6 O -0.918 6.918 7 C -0.787 4.787 8 C 0.325 3.675 9 O -0.416 6.416 10 N -0.324 5.324 11 C -0.016 4.016 12 C -0.157 4.157 13 C -0.101 4.101 14 C -0.009 4.009 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.170 4.170 24 C -0.021 4.021 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.657 -14.604 9.546 24.823 hybrid contribution 0.260 1.508 -0.056 1.531 sum -17.398 -13.096 9.490 23.754 Atomic orbital electron populations 1.21730 0.93838 1.02445 1.02374 1.21276 0.98416 0.91755 1.04161 1.30493 1.26047 1.06593 1.11721 1.07500 0.77389 0.76507 0.75872 1.93592 1.78497 1.73695 1.45733 1.93577 1.78630 1.73776 1.45824 1.30876 1.03846 1.30759 1.13209 1.19042 0.87316 0.83972 0.77125 1.90839 1.60543 1.39218 1.51016 1.48038 1.08377 1.04926 1.71084 1.21922 0.78179 1.01517 0.99957 1.21978 1.02002 0.95148 0.96584 1.21269 0.91237 0.95929 1.01645 1.19120 0.96264 0.93318 0.92190 1.21224 0.97034 1.27764 1.09543 0.92559 1.25019 0.97818 0.96282 0.95351 1.69950 1.36437 1.33711 1.13385 0.86630 0.85363 0.77927 0.78296 1.20666 1.21304 1.19900 1.22063 0.99174 0.98693 0.97075 1.21969 0.93197 0.86519 1.00407 0.92183 0.91841 0.92250 0.89987 0.90052 0.84859 0.84752 0.82426 0.82225 0.91311 0.89195 0.89400 0.92135 0.92188 0.96605 0.96594 0.93016 0.91801 0.90768 0.90363 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.73 5.94 -26.73 -0.16 -0.89 16 3 C -0.62 -3.16 5.81 37.16 0.22 -2.95 16 4 S 2.45 24.98 3.96 -107.50 -0.43 24.55 16 5 O -0.92 -13.26 17.95 -59.53 -1.07 -14.33 16 6 O -0.92 -12.83 17.95 -59.53 -1.07 -13.90 16 7 C -0.66 -5.64 4.64 36.00 0.17 -5.47 16 8 C 0.54 7.81 7.72 -10.99 -0.08 7.72 16 9 O -0.54 -9.96 15.04 2.55 0.04 -9.93 16 10 N -0.59 -8.29 2.97 -172.74 -0.51 -8.80 16 11 C 0.11 1.62 6.42 -3.71 -0.02 1.60 16 12 C -0.12 -2.11 5.21 -26.45 -0.14 -2.25 16 13 C -0.08 -1.51 2.10 -90.42 -0.19 -1.70 16 14 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 15 C -0.52 -13.86 8.39 -34.44 -0.29 -14.15 16 16 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.28 13.28 55.43 0.74 -25.54 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.13 -1.90 5.37 -26.59 -0.14 -2.04 16 24 C 0.10 1.15 6.34 -3.68 -0.02 1.12 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.13 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.16 0.71 7.94 -51.92 -0.41 0.30 16 33 H 0.16 0.85 7.69 -51.92 -0.40 0.45 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 36 H 0.09 1.67 6.93 -51.93 -0.36 1.31 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -37.87 372.76 -9.92 -47.79 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -7.69 Total: -4.40 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -0.52 Total: -17.28 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.22 Total: -34.35 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -2.10 Total: -38.15 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 24.98 SS G_CDS: -0.43 Total: 24.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.87 -9.92 -47.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567945871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.770 kcal (2) G-P(sol) polarization free energy of solvation -37.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds