Wall clock time and date at job start Tue Mar 31 2020 12:47:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53003 * 109.46924 * 2 1
4 4 S 1.81401 * 109.47480 * 179.97438 * 3 2 1
5 5 O 1.42107 * 108.57731 * 65.50754 * 4 3 2
6 6 O 1.42100 * 108.57564 * 294.48783 * 4 3 2
7 7 C 1.81399 * 101.92601 * 179.97438 * 4 3 2
8 8 C 1.50698 * 109.47102 * 179.97438 * 7 4 3
9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 4
10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 4
11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7
12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8
13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10
14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11
15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12
16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13
17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13
18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14
19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.47056 * 90.00284 * 19 17 15
21 21 H 1.48503 * 109.47155 * 209.99821 * 19 17 15
22 22 H 1.48497 * 109.47425 * 330.00030 * 19 17 15
23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11
24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7
25 25 H 1.09002 * 109.46708 * 60.00436 * 1 2 3
26 26 H 1.08997 * 109.46928 * 180.02562 * 1 2 3
27 27 H 1.08996 * 109.47542 * 300.00221 * 1 2 3
28 28 H 1.08992 * 109.47280 * 240.00207 * 2 1 3
29 29 H 1.08998 * 109.47191 * 119.99473 * 2 1 3
30 30 H 1.08996 * 109.47192 * 59.99564 * 3 2 1
31 31 H 1.09009 * 109.47230 * 299.99683 * 3 2 1
32 32 H 1.09001 * 109.46570 * 59.99789 * 7 4 3
33 33 H 1.09001 * 109.47092 * 300.00037 * 7 4 3
34 34 H 1.09002 * 109.58751 * 246.20189 * 11 10 8
35 35 H 1.08996 * 109.58750 * 6.48373 * 11 10 8
36 36 H 1.08997 * 109.49914 * 174.65962 * 12 11 10
37 37 H 1.09002 * 109.49585 * 294.75599 * 12 11 10
38 38 H 1.09001 * 109.42242 * 58.75065 * 13 12 11
39 39 H 1.09001 * 109.46592 * 55.13132 * 14 13 12
40 40 H 1.08997 * 109.47133 * 175.12697 * 14 13 12
41 41 H 0.97001 * 120.00836 * 179.97438 * 18 17 15
42 42 H 1.08994 * 109.50232 * 301.42239 * 23 13 12
43 43 H 1.09007 * 109.52628 * 181.33900 * 23 13 12
44 44 H 1.08994 * 109.58580 * 353.38021 * 24 10 8
45 45 H 1.09006 * 109.57831 * 113.65514 * 24 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 16 3.8540 1.4427 0.0008
5 8 4.3073 0.8841 -1.2248
6 8 4.3062 0.8846 1.2269
7 6 4.2287 3.2176 -0.0001
8 6 5.7226 3.4156 0.0010
9 8 6.4617 2.4541 0.0018
10 7 6.2373 4.6612 0.0011
11 6 7.6915 4.8704 0.0028
12 6 8.0616 5.7907 -1.1646
13 6 7.2380 7.0806 -1.0690
14 6 7.6268 8.0185 -2.2136
15 6 9.0627 8.4450 -2.0478
16 1 9.6401 8.0837 -1.2097
17 6 9.6392 9.2966 -2.9663
18 7 8.9361 9.7370 -3.9866
19 14 11.4188 9.8259 -2.7604
20 1 12.3055 8.8658 -3.4656
21 1 11.6014 11.1827 -3.3358
22 1 11.7643 9.8500 -1.3164
23 6 5.7477 6.7469 -1.1671
24 6 5.3546 5.8359 0.0007
25 1 -0.3633 0.5138 -0.8901
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3634 0.5138 0.8899
28 1 1.8934 -0.5138 -0.8899
29 1 1.8934 -0.5137 0.8900
30 1 1.6766 1.9564 0.8899
31 1 1.6767 1.9564 -0.8901
32 1 3.8005 3.6797 0.8894
33 1 3.8013 3.6787 -0.8906
34 1 7.9931 5.3329 0.9426
35 1 8.1985 3.9124 -0.1121
36 1 9.1242 6.0291 -1.1172
37 1 7.8426 5.2888 -2.1071
38 1 7.4387 7.5689 -0.1153
39 1 7.5095 7.4990 -3.1647
40 1 6.9825 8.8975 -2.1979
41 1 9.3415 10.3364 -4.6325
42 1 5.5505 6.2363 -2.1096
43 1 5.1647 7.6669 -1.1228
44 1 4.3197 5.5152 -0.1181
45 1 5.4642 6.3755 0.9414
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000567945871.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:41
Heat of formation + Delta-G solvation = -127.560676 kcal
Electronic energy + Delta-G solvation = -24932.315178 eV
Core-core repulsion = 21269.474868 eV
Total energy + Delta-G solvation = -3662.840309 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.149 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.23768 -37.57618 -37.14385 -36.18743 -35.29137 -34.20051 -32.33065 -31.52877
-30.11914 -28.23701 -27.86202 -24.73335 -23.03669 -22.45905 -21.94025 -20.17108
-19.10030 -18.80742 -17.73380 -16.76110 -16.71146 -16.38647 -16.26124 -15.77801
-15.33180 -15.05223 -14.57247 -14.07435 -14.01148 -13.69377 -13.57210 -13.26142
-13.02743 -13.02218 -12.97712 -12.64886 -12.32261 -12.19516 -12.13085 -11.97116
-11.93131 -11.39763 -11.29113 -11.24572 -11.10885 -10.85619 -10.74891 -10.70964
-10.49320 -10.33717 -10.08340 -9.71655 -9.35952 -9.03832 -8.55195 -8.39104
-6.04035 -4.06109 -0.40381 2.34536 2.47024 2.78651 3.29446 3.36279
3.38630 3.46098 3.70290 4.05278 4.14390 4.19358 4.42394 4.56069
4.63123 4.74324 4.86903 4.91620 5.04602 5.14586 5.20642 5.28488
5.32332 5.46698 5.47350 5.49337 5.53589 5.67632 5.70765 5.85670
5.96388 6.20184 6.23902 6.41850 6.50745 6.87968 6.92992 7.03385
7.27249 7.60283 7.74224 7.89304 7.94813 8.37245 9.00120 9.58178
11.07179
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.032738 B = 0.002487 C = 0.002415
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 855.078304 B =11254.817970 C =11589.841285
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.118 4.118
3 C -0.620 4.620
4 S 2.450 3.550
5 O -0.918 6.918
6 O -0.921 6.921
7 C -0.660 4.660
8 C 0.540 3.460
9 O -0.538 6.538
10 N -0.592 5.592
11 C 0.106 3.894
12 C -0.119 4.119
13 C -0.082 4.082
14 C 0.028 3.972
15 C -0.517 4.517
16 H 0.056 0.944
17 C 0.056 3.944
18 N -0.895 5.895
19 Si 0.890 3.110
20 H -0.281 1.281
21 H -0.287 1.287
22 H -0.274 1.274
23 C -0.132 4.132
24 C 0.102 3.898
25 H 0.059 0.941
26 H 0.063 0.937
27 H 0.058 0.942
28 H 0.081 0.919
29 H 0.081 0.919
30 H 0.133 0.867
31 H 0.134 0.866
32 H 0.158 0.842
33 H 0.160 0.840
34 H 0.069 0.931
35 H 0.090 0.910
36 H 0.088 0.912
37 H 0.060 0.940
38 H 0.060 0.940
39 H 0.016 0.984
40 H 0.016 0.984
41 H 0.260 0.740
42 H 0.063 0.937
43 H 0.074 0.926
44 H 0.078 0.922
45 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.673 -13.560 9.695 25.031
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.156 4.156
3 C -0.749 4.749
4 S 2.627 3.373
5 O -0.915 6.915
6 O -0.918 6.918
7 C -0.787 4.787
8 C 0.325 3.675
9 O -0.416 6.416
10 N -0.324 5.324
11 C -0.016 4.016
12 C -0.157 4.157
13 C -0.101 4.101
14 C -0.009 4.009
15 C -0.556 4.556
16 H 0.074 0.926
17 C -0.145 4.145
18 N -0.535 5.535
19 Si 0.718 3.282
20 H -0.207 1.207
21 H -0.213 1.213
22 H -0.199 1.199
23 C -0.170 4.170
24 C -0.021 4.021
25 H 0.078 0.922
26 H 0.082 0.918
27 H 0.078 0.922
28 H 0.100 0.900
29 H 0.099 0.901
30 H 0.151 0.849
31 H 0.152 0.848
32 H 0.176 0.824
33 H 0.178 0.822
34 H 0.087 0.913
35 H 0.108 0.892
36 H 0.106 0.894
37 H 0.079 0.921
38 H 0.078 0.922
39 H 0.034 0.966
40 H 0.034 0.966
41 H 0.070 0.930
42 H 0.082 0.918
43 H 0.092 0.908
44 H 0.096 0.904
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -17.657 -14.604 9.546 24.823
hybrid contribution 0.260 1.508 -0.056 1.531
sum -17.398 -13.096 9.490 23.754
Atomic orbital electron populations
1.21730 0.93838 1.02445 1.02374 1.21276 0.98416 0.91755 1.04161
1.30493 1.26047 1.06593 1.11721 1.07500 0.77389 0.76507 0.75872
1.93592 1.78497 1.73695 1.45733 1.93577 1.78630 1.73776 1.45824
1.30876 1.03846 1.30759 1.13209 1.19042 0.87316 0.83972 0.77125
1.90839 1.60543 1.39218 1.51016 1.48038 1.08377 1.04926 1.71084
1.21922 0.78179 1.01517 0.99957 1.21978 1.02002 0.95148 0.96584
1.21269 0.91237 0.95929 1.01645 1.19120 0.96264 0.93318 0.92190
1.21224 0.97034 1.27764 1.09543 0.92559 1.25019 0.97818 0.96282
0.95351 1.69950 1.36437 1.33711 1.13385 0.86630 0.85363 0.77927
0.78296 1.20666 1.21304 1.19900 1.22063 0.99174 0.98693 0.97075
1.21969 0.93197 0.86519 1.00407 0.92183 0.91841 0.92250 0.89987
0.90052 0.84859 0.84752 0.82426 0.82225 0.91311 0.89195 0.89400
0.92135 0.92188 0.96605 0.96594 0.93016 0.91801 0.90768 0.90363
0.90901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16
2 C -0.12 -0.73 5.94 -26.73 -0.16 -0.89 16
3 C -0.62 -3.16 5.81 37.16 0.22 -2.95 16
4 S 2.45 24.98 3.96 -107.50 -0.43 24.55 16
5 O -0.92 -13.26 17.95 -59.53 -1.07 -14.33 16
6 O -0.92 -12.83 17.95 -59.53 -1.07 -13.90 16
7 C -0.66 -5.64 4.64 36.00 0.17 -5.47 16
8 C 0.54 7.81 7.72 -10.99 -0.08 7.72 16
9 O -0.54 -9.96 15.04 2.55 0.04 -9.93 16
10 N -0.59 -8.29 2.97 -172.74 -0.51 -8.80 16
11 C 0.11 1.62 6.42 -3.71 -0.02 1.60 16
12 C -0.12 -2.11 5.21 -26.45 -0.14 -2.25 16
13 C -0.08 -1.51 2.10 -90.42 -0.19 -1.70 16
14 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16
15 C -0.52 -13.86 8.39 -34.44 -0.29 -14.15 16
16 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16
17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16
18 N -0.90 -26.28 13.28 55.43 0.74 -25.54 16
19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16
20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
23 C -0.13 -1.90 5.37 -26.59 -0.14 -2.04 16
24 C 0.10 1.15 6.34 -3.68 -0.02 1.12 16
25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16
28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.13 0.38 8.14 -51.92 -0.42 -0.05 16
32 H 0.16 0.71 7.94 -51.92 -0.41 0.30 16
33 H 0.16 0.85 7.69 -51.92 -0.40 0.45 16
34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16
35 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16
36 H 0.09 1.67 6.93 -51.93 -0.36 1.31 16
37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16
41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
43 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16
44 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16
45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
LS Contribution 372.76 15.07 5.62 5.62
Total: -1.00 -37.87 372.76 -9.92 -47.79
By element:
Atomic # 1 Polarization: 3.29 SS G_CDS: -7.69 Total: -4.40 kcal
Atomic # 6 Polarization: -16.76 SS G_CDS: -0.52 Total: -17.28 kcal
Atomic # 7 Polarization: -34.57 SS G_CDS: 0.22 Total: -34.35 kcal
Atomic # 8 Polarization: -36.05 SS G_CDS: -2.10 Total: -38.15 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal
Atomic # 16 Polarization: 24.98 SS G_CDS: -0.43 Total: 24.55 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -37.87 -9.92 -47.79 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000567945871.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.770 kcal
(2) G-P(sol) polarization free energy of solvation -37.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.645 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.791 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds