Wall clock time and date at job start Tue Mar 31 2020 12:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46924 * 2 1 4 4 S 1.81401 * 109.47480 * 179.97438 * 3 2 1 5 5 O 1.42107 * 108.57731 * 65.50754 * 4 3 2 6 6 O 1.42100 * 108.57564 * 294.48783 * 4 3 2 7 7 C 1.81399 * 101.92601 * 179.97438 * 4 3 2 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 4 3 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 4 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47056 * 90.00284 * 19 17 15 21 21 H 1.48503 * 109.47155 * 209.99821 * 19 17 15 22 22 H 1.48497 * 109.47425 * 330.00030 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.09002 * 109.46708 * 60.00436 * 1 2 3 26 26 H 1.08997 * 109.46928 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47542 * 300.00221 * 1 2 3 28 28 H 1.08992 * 109.47280 * 240.00207 * 2 1 3 29 29 H 1.08998 * 109.47191 * 119.99473 * 2 1 3 30 30 H 1.08996 * 109.47192 * 59.99564 * 3 2 1 31 31 H 1.09009 * 109.47230 * 299.99683 * 3 2 1 32 32 H 1.09001 * 109.46570 * 59.99789 * 7 4 3 33 33 H 1.09001 * 109.47092 * 300.00037 * 7 4 3 34 34 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 35 35 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 36 36 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 37 37 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 38 38 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 39 39 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 40 40 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 41 41 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 43 43 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 44 44 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 45 45 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4427 0.0008 5 8 4.3073 0.8841 -1.2248 6 8 4.3062 0.8846 1.2269 7 6 4.2287 3.2176 -0.0001 8 6 5.7226 3.4156 0.0010 9 8 6.4617 2.4541 0.0018 10 7 6.2373 4.6612 0.0011 11 6 7.6915 4.8704 0.0028 12 6 8.0616 5.7907 -1.1646 13 6 7.2380 7.0806 -1.0690 14 6 7.6268 8.0185 -2.2136 15 6 9.0627 8.4450 -2.0478 16 1 9.6401 8.0837 -1.2097 17 6 9.6392 9.2966 -2.9663 18 7 8.9361 9.7370 -3.9866 19 14 11.4188 9.8259 -2.7604 20 1 12.3055 8.8658 -3.4656 21 1 11.6014 11.1827 -3.3358 22 1 11.7643 9.8500 -1.3164 23 6 5.7477 6.7469 -1.1671 24 6 5.3546 5.8359 0.0007 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8901 32 1 3.8005 3.6797 0.8894 33 1 3.8013 3.6787 -0.8906 34 1 7.9931 5.3329 0.9426 35 1 8.1985 3.9124 -0.1121 36 1 9.1242 6.0291 -1.1172 37 1 7.8426 5.2888 -2.1071 38 1 7.4387 7.5689 -0.1153 39 1 7.5095 7.4990 -3.1647 40 1 6.9825 8.8975 -2.1979 41 1 9.3415 10.3364 -4.6325 42 1 5.5505 6.2363 -2.1096 43 1 5.1647 7.6669 -1.1228 44 1 4.3197 5.5152 -0.1181 45 1 5.4642 6.3755 0.9414 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567945871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:40 Heat of formation + Delta-G solvation = -155.639166 kcal Electronic energy + Delta-G solvation = -24933.532752 eV Core-core repulsion = 21269.474868 eV Total energy + Delta-G solvation = -3664.057884 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36033 -38.87239 -38.00308 -37.02248 -35.83798 -35.68363 -34.11374 -32.63514 -31.15997 -29.61735 -28.53253 -26.36077 -24.23028 -23.65511 -22.80515 -21.47868 -20.17506 -19.71968 -18.68520 -18.41577 -17.58408 -17.45537 -17.22223 -16.58495 -16.52616 -16.26935 -15.77393 -15.28725 -15.00998 -14.74341 -14.57130 -14.43199 -14.39870 -13.93203 -13.62656 -13.49657 -13.41149 -13.36055 -13.05634 -13.03582 -13.01076 -12.76280 -12.51471 -12.34888 -12.30144 -12.18571 -11.98735 -11.80888 -11.76507 -11.41871 -11.31817 -11.25534 -11.05973 -10.80758 -10.53153 -9.74763 -8.18201 -6.26739 -1.09362 1.32179 1.39315 1.40223 1.50289 1.79237 1.83522 2.41003 2.73851 3.07628 3.15639 3.29577 3.64584 3.82982 3.89536 4.00049 4.02339 4.08742 4.17080 4.25063 4.26798 4.39587 4.50817 4.53948 4.67335 4.72691 4.76707 4.78963 4.86238 4.94869 5.08350 5.13678 5.14657 5.26382 5.32433 5.37014 5.38374 5.50326 5.56751 5.80232 5.89849 6.22043 6.29555 6.84367 6.90173 7.41758 8.93322 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032738 B = 0.002487 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.078304 B =11254.817970 C =11589.841285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C -0.580 4.580 4 S 2.426 3.574 5 O -0.981 6.981 6 O -0.976 6.976 7 C -0.648 4.648 8 C 0.524 3.476 9 O -0.592 6.592 10 N -0.595 5.595 11 C 0.112 3.888 12 C -0.112 4.112 13 C -0.076 4.076 14 C 0.033 3.967 15 C -0.529 4.529 16 H 0.061 0.939 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.262 1.262 23 C -0.129 4.129 24 C 0.102 3.898 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.211 0.789 33 H 0.202 0.798 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.065 0.935 39 H -0.017 1.017 40 H -0.005 1.005 41 H 0.261 0.739 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.130 0.870 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.611 -12.567 11.492 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.714 4.714 4 S 2.612 3.388 5 O -0.978 6.978 6 O -0.973 6.973 7 C -0.776 4.776 8 C 0.312 3.688 9 O -0.474 6.474 10 N -0.326 5.326 11 C -0.011 4.011 12 C -0.150 4.150 13 C -0.094 4.094 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.079 0.921 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.781 3.219 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.186 1.186 23 C -0.167 4.167 24 C -0.019 4.019 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.193 0.807 31 H 0.189 0.811 32 H 0.228 0.772 33 H 0.219 0.781 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.002 0.998 40 H 0.014 0.986 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.148 0.852 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.561 -13.619 11.358 27.152 hybrid contribution 1.103 1.220 -0.649 1.768 sum -19.458 -12.399 10.710 25.437 Atomic orbital electron populations 1.21750 0.92060 1.03005 1.03479 1.21459 0.99864 0.92497 1.03593 1.30209 1.18666 1.06853 1.15627 1.07733 0.80147 0.77160 0.73786 1.93519 1.81292 1.75676 1.47350 1.93509 1.81272 1.75553 1.47014 1.30816 0.99499 1.29560 1.17721 1.20017 0.89805 0.83143 0.75827 1.90825 1.62614 1.40876 1.53083 1.48158 1.07816 1.05968 1.70684 1.21682 0.80028 1.00035 0.99327 1.21824 1.00843 0.95450 0.96903 1.21128 0.94570 0.94620 0.99128 1.19019 0.94906 0.93411 0.93099 1.21689 0.98467 1.27170 1.09381 0.92054 1.25908 1.02207 0.96636 0.95179 1.70078 1.38356 1.34679 1.14382 0.85581 0.80110 0.77399 0.78771 1.20409 1.20991 1.18632 1.21993 0.95929 1.00242 0.98501 1.22233 0.95090 0.84943 0.99618 0.91199 0.91790 0.90942 0.91038 0.90725 0.80716 0.81132 0.77197 0.78099 0.89547 0.90771 0.91419 0.94184 0.91635 0.99833 0.98640 0.93014 0.92737 0.89344 0.85221 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.91 71.98 0.71 -0.13 16 2 C -0.14 -1.35 5.94 30.60 0.18 -1.17 16 3 C -0.58 -3.31 5.81 71.98 0.42 -2.89 16 4 S 2.43 46.16 3.96 -56.49 -0.22 45.94 16 5 O -0.98 -29.24 17.95 -125.75 -2.26 -31.49 16 6 O -0.98 -27.51 17.95 -125.75 -2.26 -29.76 16 7 C -0.65 -8.27 4.64 71.24 0.33 -7.94 16 8 C 0.52 14.25 7.72 87.66 0.68 14.92 16 9 O -0.59 -22.54 15.04 -0.15 0.00 -22.54 16 10 N -0.60 -15.26 2.97 -818.81 -2.43 -17.70 16 11 C 0.11 3.40 6.42 86.36 0.55 3.96 16 12 C -0.11 -4.06 5.21 30.78 0.16 -3.90 16 13 C -0.08 -2.76 2.10 -10.66 -0.02 -2.78 16 14 C 0.03 1.62 4.45 29.85 0.13 1.75 16 15 C -0.53 -28.86 8.39 25.60 0.21 -28.65 16 16 H 0.06 3.21 7.06 -2.91 -0.02 3.19 16 17 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 18 N -0.93 -56.14 13.28 21.45 0.28 -55.85 16 19 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 C -0.13 -3.39 5.37 30.69 0.16 -3.23 16 24 C 0.10 1.83 6.34 86.38 0.55 2.37 16 25 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.18 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.17 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.21 0.40 7.94 -2.39 -0.02 0.38 16 33 H 0.20 0.89 7.69 -2.39 -0.02 0.87 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 2.50 7.00 -2.39 -0.02 2.48 16 36 H 0.07 2.67 6.93 -2.39 -0.02 2.65 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.13 1.04 5.93 -2.39 -0.01 1.03 16 45 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -91.54 372.76 0.63 -90.92 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 0.95 Total: 1.81 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 4.53 Total: -27.34 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -2.15 Total: -73.55 kcal Atomic # 8 Polarization: -79.28 SS G_CDS: -4.52 Total: -83.80 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 46.16 SS G_CDS: -0.22 Total: 45.94 kcal Total: -91.54 0.63 -90.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567945871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.723 kcal (2) G-P(sol) polarization free energy of solvation -91.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds