Wall clock time and date at job start Tue Mar 31 2020 12:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47543 * 2 1 4 4 O 1.42901 * 109.47142 * 120.00055 * 2 1 3 5 5 C 1.42905 * 113.99742 * 90.00113 * 4 2 1 6 6 H 1.09000 * 110.64439 * 29.29601 * 5 4 2 7 7 C 1.55165 * 110.71460 * 266.15737 * 5 4 2 8 8 C 1.55125 * 101.48254 * 276.82772 * 7 5 4 9 9 N 1.47418 * 104.94276 * 323.22671 * 8 7 5 10 10 S 1.65605 * 125.64636 * 203.96549 * 9 8 7 11 11 O 1.42104 * 104.27443 * 26.11518 * 10 9 8 12 12 O 1.42101 * 104.27907 * 153.97005 * 10 9 8 13 13 C 1.81399 * 104.45286 * 270.04259 * 10 9 8 14 14 C 1.53000 * 109.47288 * 174.00908 * 13 10 9 15 15 C 1.50696 * 115.54466 * 65.27821 * 14 13 10 16 16 H 1.08005 * 120.00129 * 268.53940 * 15 14 13 17 17 C 1.37883 * 120.00303 * 88.54947 * 15 14 13 18 18 N 1.31511 * 120.00110 * 174.69510 * 17 15 14 19 19 Si 1.86800 * 119.99625 * 354.69291 * 17 15 14 20 20 H 1.48499 * 109.47396 * 92.55512 * 19 17 15 21 21 H 1.48498 * 109.47253 * 212.55524 * 19 17 15 22 22 H 1.48499 * 109.47409 * 332.55355 * 19 17 15 23 23 C 1.52998 * 117.50098 * 279.60562 * 14 13 10 24 24 C 1.52995 * 117.49769 * 210.94607 * 14 13 10 25 25 C 1.47019 * 108.70751 * 24.00372 * 9 8 7 26 26 H 1.09000 * 109.47101 * 59.99088 * 1 2 3 27 27 H 1.08993 * 109.47428 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46620 * 300.00091 * 1 2 3 29 29 H 1.09003 * 109.47122 * 240.00012 * 2 1 3 30 30 H 1.08992 * 109.47247 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46947 * 300.00507 * 3 2 1 32 32 H 1.09003 * 109.46902 * 59.99877 * 3 2 1 33 33 H 1.08993 * 111.00583 * 35.03814 * 7 5 4 34 34 H 1.08997 * 110.99849 * 158.89042 * 7 5 4 35 35 H 1.09001 * 110.41929 * 204.29661 * 8 7 5 36 36 H 1.08997 * 110.29771 * 82.09608 * 8 7 5 37 37 H 1.08999 * 109.46685 * 294.01401 * 13 10 9 38 38 H 1.09004 * 109.46573 * 54.00801 * 13 10 9 39 39 H 0.96998 * 120.00005 * 180.02562 * 18 17 15 40 40 H 1.09009 * 117.49740 * 359.97438 * 23 14 13 41 41 H 1.08993 * 117.50043 * 145.01957 * 23 14 13 42 42 H 1.09005 * 117.49795 * 214.98643 * 24 14 13 43 43 H 1.08998 * 117.49930 * 359.97438 * 24 14 13 44 44 H 1.09002 * 109.87955 * 239.52398 * 25 9 8 45 45 H 1.08995 * 109.88099 * 118.35854 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9885 6 1 2.4519 -2.3030 -0.0479 7 6 0.9389 -2.8667 1.4304 8 6 1.1601 -2.9697 2.9623 9 7 2.6138 -3.1526 3.1250 10 16 3.3583 -3.8581 4.4252 11 8 2.3763 -4.7371 4.9568 12 8 4.5811 -4.3571 3.9007 13 6 3.6695 -2.4849 5.5689 14 6 4.2253 -3.0331 6.8847 15 6 5.5798 -3.6877 6.7955 16 1 5.6553 -4.7502 6.6167 17 6 6.7226 -2.9303 6.9422 18 7 7.9002 -3.5152 6.9687 19 14 6.5981 -1.0735 7.1031 20 1 6.5329 -0.7044 8.5401 21 1 7.7907 -0.4418 6.4835 22 1 5.3718 -0.5979 6.4138 23 6 3.2253 -3.6124 7.8873 24 6 3.8951 -2.2645 8.1658 25 6 3.2933 -2.6040 1.9424 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 0.0301 -2.3107 1.2005 34 1 0.9163 -3.8557 0.9728 35 1 0.6222 -3.8269 3.3675 36 1 0.8357 -2.0525 3.4538 37 1 4.3927 -1.8002 5.1261 38 1 2.7371 -1.9541 5.7614 39 1 8.7041 -2.9825 7.0722 40 1 2.1712 -3.6027 7.6097 41 1 3.5472 -4.4668 8.4827 42 1 4.6575 -2.2326 8.9442 43 1 3.2823 -1.3681 8.0711 44 1 3.8699 -3.3869 1.4497 45 1 3.9511 -1.7869 2.2385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569114306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:28 Heat of formation + Delta-G solvation = -88.133263 kcal Electronic energy + Delta-G solvation = -26114.084047 eV Core-core repulsion = 22452.953439 eV Total energy + Delta-G solvation = -3661.130608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.50577 -37.12001 -36.90782 -36.34254 -35.14688 -32.76069 -32.14661 -30.22301 -28.60168 -28.44007 -27.46654 -25.50717 -22.55786 -21.77232 -21.68594 -21.21247 -19.39129 -18.45379 -17.30398 -17.23170 -16.59620 -15.69894 -15.46805 -15.35333 -15.15934 -14.66606 -14.32010 -13.94857 -13.70240 -13.51444 -13.26643 -12.99423 -12.77811 -12.58459 -12.56984 -12.40967 -12.34276 -12.27622 -11.68023 -11.43785 -11.37608 -11.30483 -11.20666 -11.10058 -10.93466 -10.91041 -10.78662 -10.63216 -10.35668 -10.08155 -9.77964 -9.70598 -9.13946 -8.87516 -8.64272 -8.38489 -6.15379 -4.22715 0.90057 3.24423 3.26825 3.34258 3.37539 3.38500 4.31600 4.37141 4.43849 4.49518 4.61813 4.72375 4.82631 4.83311 4.90444 4.96662 5.09510 5.16016 5.28875 5.33341 5.35455 5.43880 5.50585 5.53226 5.61152 5.69674 5.71803 5.79026 5.82838 5.90528 5.94653 5.96335 5.98711 6.05711 6.21779 6.28102 6.44776 6.58693 6.69577 6.90925 7.08113 7.09780 7.61543 8.38502 8.89671 9.46049 10.96113 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.004404 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.113681 B = 6356.796873 C = 7019.696560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.366 6.366 5 C 0.079 3.921 6 H 0.080 0.920 7 C -0.154 4.154 8 C 0.120 3.880 9 N -1.021 6.021 10 S 2.629 3.371 11 O -0.963 6.963 12 O -0.936 6.936 13 C -0.574 4.574 14 C 0.000 4.000 15 C -0.510 4.510 16 H 0.087 0.913 17 C 0.089 3.911 18 N -0.883 5.883 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.256 1.256 23 C -0.177 4.177 24 C -0.185 4.185 25 C 0.123 3.877 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.267 0.733 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 8.338 -14.595 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.022 3.978 3 C -0.208 4.208 4 O -0.285 6.285 5 C 0.020 3.980 6 H 0.098 0.902 7 C -0.193 4.193 8 C -0.005 4.005 9 N -0.858 5.858 10 S 2.726 3.274 11 O -0.954 6.954 12 O -0.926 6.926 13 C -0.706 4.706 14 C -0.002 4.002 15 C -0.546 4.546 16 H 0.105 0.895 17 C -0.115 4.115 18 N -0.518 5.518 19 Si 0.700 3.300 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.180 1.180 23 C -0.214 4.214 24 C -0.223 4.223 25 C -0.003 4.003 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.144 0.856 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.871 7.485 -14.288 21.939 hybrid contribution -0.038 1.765 0.076 1.767 sum -14.910 9.250 -14.212 22.580 Atomic orbital electron populations 1.22433 0.96108 1.02491 1.02517 1.22179 0.93658 0.93931 0.88073 1.21875 1.01998 0.94561 1.02416 1.88017 1.85910 1.19228 1.35352 1.23213 0.94799 0.81410 0.98609 0.90191 1.23439 0.98585 1.01030 0.96288 1.21935 0.80810 1.01580 0.96189 1.59095 1.14804 1.78232 1.33696 1.04654 0.73345 0.76078 0.73312 1.93496 1.61081 1.61348 1.79441 1.93573 1.45050 1.76983 1.76991 1.30329 1.08300 1.18193 1.13798 1.18872 0.96565 1.00351 0.84448 1.20343 0.85986 0.96561 1.51748 0.89545 1.24939 0.94946 0.98440 0.93218 1.69893 0.97931 1.36141 1.47840 0.86938 0.77986 0.86122 0.78947 1.20095 1.21661 1.18033 1.23022 0.96591 0.96945 1.04844 1.22982 1.03408 0.94348 1.01595 1.21756 0.94185 0.98290 0.86089 0.91909 0.92086 0.91719 0.92160 0.91854 0.91423 0.91761 0.89456 0.89828 0.89968 0.91688 0.85590 0.87626 0.92293 0.90029 0.88615 0.88903 0.90669 0.89673 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 9.22 37.16 0.34 -0.89 16 2 C 0.08 0.65 3.34 -26.73 -0.09 0.56 16 3 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 4 O -0.37 -4.06 9.72 -35.23 -0.34 -4.40 16 5 C 0.08 0.83 3.40 -24.90 -0.08 0.74 16 6 H 0.08 0.65 7.43 -51.93 -0.39 0.27 16 7 C -0.15 -1.50 6.72 -24.46 -0.16 -1.67 16 8 C 0.12 1.53 7.07 -2.42 -0.02 1.51 16 9 N -1.02 -16.08 3.62 -111.31 -0.40 -16.49 16 10 S 2.63 53.91 5.39 -107.50 -0.58 53.33 16 11 O -0.96 -21.03 17.28 -57.54 -0.99 -22.03 16 12 O -0.94 -22.76 17.26 -57.54 -0.99 -23.75 16 13 C -0.57 -11.79 5.65 37.16 0.21 -11.58 16 14 C 0.00 0.01 0.79 -155.67 -0.12 -0.11 16 15 C -0.51 -14.49 8.76 -34.44 -0.30 -14.79 16 16 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 17 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 18 N -0.88 -27.02 13.96 55.43 0.77 -26.25 16 19 Si 0.87 21.40 24.96 -169.99 -4.24 17.16 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.26 -5.83 5.68 56.52 0.32 -5.51 16 23 C -0.18 -3.73 9.96 -26.70 -0.27 -4.00 16 24 C -0.18 -3.92 7.67 -26.70 -0.20 -4.13 16 25 C 0.12 1.67 6.67 -3.07 -0.02 1.65 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.40 6.03 -51.93 -0.31 0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.42 7.40 -51.93 -0.38 0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.70 5.76 -51.93 -0.30 0.40 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.13 2.59 6.53 -51.92 -0.34 2.25 16 38 H 0.11 1.80 8.09 -51.92 -0.42 1.38 16 39 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 41 H 0.10 2.03 8.14 -51.93 -0.42 1.60 16 42 H 0.09 2.04 7.34 -51.93 -0.38 1.66 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -34.82 366.61 -9.35 -44.17 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.63 Total: 3.74 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -0.46 Total: -31.01 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.37 Total: -42.74 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -2.33 Total: -50.18 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.24 Total: 17.16 kcal Atomic # 16 Polarization: 53.91 SS G_CDS: -0.58 Total: 53.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.82 -9.35 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569114306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.965 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds