Wall clock time and date at job start Tue Mar 31 2020 12:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47543 * 2 1 4 4 O 1.42901 * 109.47142 * 120.00055 * 2 1 3 5 5 C 1.42905 * 113.99742 * 90.00113 * 4 2 1 6 6 H 1.09000 * 110.64439 * 29.29601 * 5 4 2 7 7 C 1.55165 * 110.71460 * 266.15737 * 5 4 2 8 8 C 1.55125 * 101.48254 * 276.82772 * 7 5 4 9 9 N 1.47418 * 104.94276 * 323.22671 * 8 7 5 10 10 S 1.65605 * 125.64636 * 203.96549 * 9 8 7 11 11 O 1.42104 * 104.27443 * 26.11518 * 10 9 8 12 12 O 1.42101 * 104.27907 * 153.97005 * 10 9 8 13 13 C 1.81399 * 104.45286 * 270.04259 * 10 9 8 14 14 C 1.53000 * 109.47288 * 174.00908 * 13 10 9 15 15 C 1.50696 * 115.54466 * 65.27821 * 14 13 10 16 16 H 1.08005 * 120.00129 * 268.53940 * 15 14 13 17 17 C 1.37883 * 120.00303 * 88.54947 * 15 14 13 18 18 N 1.31511 * 120.00110 * 174.69510 * 17 15 14 19 19 Si 1.86800 * 119.99625 * 354.69291 * 17 15 14 20 20 H 1.48499 * 109.47396 * 92.55512 * 19 17 15 21 21 H 1.48498 * 109.47253 * 212.55524 * 19 17 15 22 22 H 1.48499 * 109.47409 * 332.55355 * 19 17 15 23 23 C 1.52998 * 117.50098 * 279.60562 * 14 13 10 24 24 C 1.52995 * 117.49769 * 210.94607 * 14 13 10 25 25 C 1.47019 * 108.70751 * 24.00372 * 9 8 7 26 26 H 1.09000 * 109.47101 * 59.99088 * 1 2 3 27 27 H 1.08993 * 109.47428 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46620 * 300.00091 * 1 2 3 29 29 H 1.09003 * 109.47122 * 240.00012 * 2 1 3 30 30 H 1.08992 * 109.47247 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46947 * 300.00507 * 3 2 1 32 32 H 1.09003 * 109.46902 * 59.99877 * 3 2 1 33 33 H 1.08993 * 111.00583 * 35.03814 * 7 5 4 34 34 H 1.08997 * 110.99849 * 158.89042 * 7 5 4 35 35 H 1.09001 * 110.41929 * 204.29661 * 8 7 5 36 36 H 1.08997 * 110.29771 * 82.09608 * 8 7 5 37 37 H 1.08999 * 109.46685 * 294.01401 * 13 10 9 38 38 H 1.09004 * 109.46573 * 54.00801 * 13 10 9 39 39 H 0.96998 * 120.00005 * 180.02562 * 18 17 15 40 40 H 1.09009 * 117.49740 * 359.97438 * 23 14 13 41 41 H 1.08993 * 117.50043 * 145.01957 * 23 14 13 42 42 H 1.09005 * 117.49795 * 214.98643 * 24 14 13 43 43 H 1.08998 * 117.49930 * 359.97438 * 24 14 13 44 44 H 1.09002 * 109.87955 * 239.52398 * 25 9 8 45 45 H 1.08995 * 109.88099 * 118.35854 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9885 6 1 2.4519 -2.3030 -0.0479 7 6 0.9389 -2.8667 1.4304 8 6 1.1601 -2.9697 2.9623 9 7 2.6138 -3.1526 3.1250 10 16 3.3583 -3.8581 4.4252 11 8 2.3763 -4.7371 4.9568 12 8 4.5811 -4.3571 3.9007 13 6 3.6695 -2.4849 5.5689 14 6 4.2253 -3.0331 6.8847 15 6 5.5798 -3.6877 6.7955 16 1 5.6553 -4.7502 6.6167 17 6 6.7226 -2.9303 6.9422 18 7 7.9002 -3.5152 6.9687 19 14 6.5981 -1.0735 7.1031 20 1 6.5329 -0.7044 8.5401 21 1 7.7907 -0.4418 6.4835 22 1 5.3718 -0.5979 6.4138 23 6 3.2253 -3.6124 7.8873 24 6 3.8951 -2.2645 8.1658 25 6 3.2933 -2.6040 1.9424 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 0.0301 -2.3107 1.2005 34 1 0.9163 -3.8557 0.9728 35 1 0.6222 -3.8269 3.3675 36 1 0.8357 -2.0525 3.4538 37 1 4.3927 -1.8002 5.1261 38 1 2.7371 -1.9541 5.7614 39 1 8.7041 -2.9825 7.0722 40 1 2.1712 -3.6027 7.6097 41 1 3.5472 -4.4668 8.4827 42 1 4.6575 -2.2326 8.9442 43 1 3.2823 -1.3681 8.0711 44 1 3.8699 -3.3869 1.4497 45 1 3.9511 -1.7869 2.2385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569114306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:27 Heat of formation + Delta-G solvation = -114.115637 kcal Electronic energy + Delta-G solvation = -26115.210727 eV Core-core repulsion = 22452.953439 eV Total energy + Delta-G solvation = -3662.257289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.33335 -38.88503 -38.06034 -37.79290 -36.86582 -34.32389 -33.43540 -31.17882 -30.10708 -29.54964 -27.99911 -27.63164 -23.65098 -23.35254 -22.45709 -21.96373 -21.23403 -19.93325 -18.80471 -18.55567 -17.97851 -17.09175 -17.00719 -16.59494 -16.26534 -16.11398 -15.54846 -15.23747 -14.89385 -14.79756 -14.55188 -14.42471 -14.12852 -13.97159 -13.57199 -13.29077 -13.24178 -13.18223 -13.03705 -12.99892 -12.93186 -12.71904 -12.56171 -12.43546 -12.34345 -12.08365 -11.92722 -11.81599 -11.76558 -11.71535 -11.43368 -11.00122 -10.76012 -10.50496 -10.37385 -9.86035 -8.35208 -6.48162 -0.67593 1.32256 1.34622 1.47498 1.86388 2.32705 2.66868 2.87263 2.96569 3.11754 3.17022 3.51656 3.68018 3.80573 4.03812 4.06817 4.15757 4.22253 4.29277 4.33689 4.36029 4.38633 4.51646 4.54683 4.58227 4.64201 4.80067 4.82069 4.83473 4.87696 4.97369 4.99267 5.01075 5.09336 5.12694 5.17443 5.19079 5.36156 5.41265 5.42179 5.49556 5.59034 6.16615 6.41726 6.62840 7.24442 8.81170 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.004404 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.113681 B = 6356.796873 C = 7019.696560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 C -0.151 4.151 4 O -0.386 6.386 5 C 0.087 3.913 6 H 0.107 0.893 7 C -0.145 4.145 8 C 0.107 3.893 9 N -1.018 6.018 10 S 2.635 3.365 11 O -0.984 6.984 12 O -0.990 6.990 13 C -0.571 4.571 14 C -0.035 4.035 15 C -0.514 4.514 16 H 0.029 0.971 17 C 0.028 3.972 18 N -0.940 5.940 19 Si 0.932 3.068 20 H -0.259 1.259 21 H -0.293 1.293 22 H -0.222 1.222 23 C -0.171 4.171 24 C -0.168 4.168 25 C 0.108 3.892 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.150 0.850 39 H 0.269 0.731 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.551 11.391 -15.774 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 C -0.209 4.209 4 O -0.306 6.306 5 C 0.027 3.973 6 H 0.125 0.875 7 C -0.184 4.184 8 C -0.017 4.017 9 N -0.857 5.857 10 S 2.734 3.266 11 O -0.975 6.975 12 O -0.980 6.980 13 C -0.703 4.703 14 C -0.037 4.037 15 C -0.552 4.552 16 H 0.048 0.952 17 C -0.171 4.171 18 N -0.578 5.578 19 Si 0.754 3.246 20 H -0.184 1.184 21 H -0.219 1.219 22 H -0.144 1.144 23 C -0.208 4.208 24 C -0.206 4.206 25 C -0.017 4.017 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.144 0.856 38 H 0.168 0.832 39 H 0.078 0.922 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.099 0.901 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.088 10.521 -15.466 26.020 hybrid contribution 0.919 0.726 0.400 1.238 sum -17.168 11.247 -15.065 25.460 Atomic orbital electron populations 1.22402 0.94995 1.02947 1.02876 1.22404 0.94560 0.93901 0.87681 1.21900 1.01436 0.94581 1.02943 1.87989 1.86261 1.19345 1.36998 1.23161 0.93739 0.81480 0.98875 0.87515 1.23466 0.99182 1.01918 0.93796 1.22280 0.78553 1.02088 0.98770 1.58649 1.16380 1.77932 1.32770 1.04039 0.72309 0.76384 0.73848 1.93453 1.61082 1.62670 1.80253 1.93507 1.47688 1.78637 1.78170 1.30198 1.10261 1.18042 1.11807 1.18793 0.95064 1.02933 0.86957 1.20449 0.89237 0.94427 1.51047 0.95239 1.25916 0.94207 1.04173 0.92808 1.70056 0.99050 1.38444 1.50220 0.85985 0.79266 0.79212 0.80091 1.18411 1.21940 1.14414 1.23104 0.97595 0.96954 1.03187 1.23085 1.03054 0.95653 0.98845 1.22022 0.95516 0.98139 0.86027 0.90366 0.91544 0.92587 0.90718 0.92768 0.89451 0.92699 0.87104 0.88805 0.90293 0.90361 0.85568 0.83166 0.92167 0.87004 0.89931 0.90020 0.86593 0.90054 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.22 71.98 0.66 -1.13 16 2 C 0.07 0.94 3.34 30.59 0.10 1.05 16 3 C -0.15 -1.92 9.56 71.98 0.69 -1.23 16 4 O -0.39 -7.44 9.72 -148.98 -1.45 -8.89 16 5 C 0.09 1.57 3.40 31.78 0.11 1.67 16 6 H 0.11 1.37 7.43 -2.39 -0.02 1.35 16 7 C -0.14 -2.34 6.72 32.06 0.22 -2.12 16 8 C 0.11 2.45 7.07 86.93 0.61 3.07 16 9 N -1.02 -30.80 3.62 -506.06 -1.83 -32.63 16 10 S 2.64 108.40 5.39 -56.49 -0.30 108.09 16 11 O -0.98 -42.98 17.28 -127.65 -2.21 -45.18 16 12 O -0.99 -50.48 17.26 -127.65 -2.20 -52.68 16 13 C -0.57 -22.23 5.65 71.98 0.41 -21.82 16 14 C -0.03 -1.61 0.79 -52.93 -0.04 -1.66 16 15 C -0.51 -30.39 8.76 25.60 0.22 -30.17 16 16 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 17 C 0.03 1.67 5.47 84.66 0.46 2.14 16 18 N -0.94 -60.37 13.96 21.45 0.30 -60.07 16 19 Si 0.93 43.47 24.96 68.60 1.71 45.18 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.22 -9.03 5.68 99.48 0.57 -8.46 16 23 C -0.17 -6.93 9.96 30.62 0.30 -6.63 16 24 C -0.17 -6.58 7.67 30.62 0.23 -6.35 16 25 C 0.11 2.83 6.67 86.73 0.58 3.41 16 26 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.60 6.03 -2.39 -0.01 0.59 16 28 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.07 0.77 7.40 -2.39 -0.02 0.75 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 1.30 5.76 -2.39 -0.01 1.29 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.85 7.67 -2.39 -0.02 1.83 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.13 4.91 6.53 -2.39 -0.02 4.89 16 38 H 0.15 4.42 8.09 -2.39 -0.02 4.41 16 39 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 40 H 0.11 3.84 8.14 -2.38 -0.02 3.82 16 41 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 42 H 0.08 3.39 7.34 -2.38 -0.02 3.37 16 43 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.07 1.90 8.07 -2.39 -0.02 1.88 16 Total: -1.00 -80.49 366.61 -0.60 -81.10 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.82 Total: 24.86 kcal Atomic # 6 Polarization: -64.33 SS G_CDS: 4.56 Total: -59.77 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -1.53 Total: -92.70 kcal Atomic # 8 Polarization: -100.90 SS G_CDS: -5.86 Total: -106.75 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.71 Total: 45.18 kcal Atomic # 16 Polarization: 108.40 SS G_CDS: -0.30 Total: 108.09 kcal Total: -80.49 -0.60 -81.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569114306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.018 kcal (2) G-P(sol) polarization free energy of solvation -80.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds