Wall clock time and date at job start Tue Mar 31 2020 11:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47087 * 2 1 4 4 N 1.46507 * 109.46997 * 119.99960 * 2 1 3 5 5 C 1.46495 * 120.00177 * 304.66563 * 4 2 1 6 6 C 1.50700 * 109.47049 * 263.33533 * 5 4 2 7 7 H 1.08004 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99936 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00022 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47162 * 59.99812 * 10 8 6 12 12 H 1.48495 * 109.46981 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46637 * 299.99803 * 10 8 6 14 14 C 1.34782 * 119.99700 * 124.66667 * 4 2 1 15 15 O 1.21749 * 120.00214 * 4.27412 * 14 4 2 16 16 C 1.46306 * 119.99943 * 184.27416 * 14 4 2 17 17 C 1.37844 * 125.96626 * 173.93248 * 16 14 4 18 18 C 1.39774 * 106.77733 * 179.97438 * 17 16 14 19 19 C 1.36607 * 107.12281 * 359.97438 * 18 17 16 20 20 C 1.47679 * 125.65556 * 179.97438 * 19 18 17 21 21 C 1.41168 * 126.37227 * 0.17021 * 20 19 18 22 22 N 1.30539 * 108.10040 * 180.27088 * 21 20 19 23 23 N 1.39953 * 108.85594 * 359.74508 * 22 21 20 24 24 C 1.46499 * 125.80189 * 180.02562 * 23 22 21 25 25 C 1.34659 * 108.39173 * 0.02562 * 23 22 21 26 26 O 1.34328 * 108.69631 * 0.23997 * 19 18 17 27 27 H 1.09005 * 109.47086 * 299.99939 * 1 2 3 28 28 H 1.08994 * 109.47450 * 60.00376 * 1 2 3 29 29 H 1.09007 * 109.47080 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47274 * 239.99600 * 2 1 3 31 31 H 1.09002 * 109.47140 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47131 * 299.99844 * 3 2 1 33 33 H 1.08996 * 109.47004 * 60.00294 * 3 2 1 34 34 H 1.09002 * 109.46868 * 23.33235 * 5 4 2 35 35 H 1.08998 * 109.47181 * 143.33412 * 5 4 2 36 36 H 0.96997 * 119.99991 * 180.02562 * 9 8 6 37 37 H 1.08003 * 126.61463 * 0.02562 * 17 16 14 38 38 H 1.07995 * 126.44280 * 180.02562 * 18 17 16 39 39 H 1.08004 * 125.95064 * 359.97438 * 21 20 19 40 40 H 1.09006 * 109.47110 * 269.97265 * 24 23 22 41 41 H 1.08999 * 109.47423 * 29.97325 * 24 23 22 42 42 H 1.09003 * 109.47204 * 149.98024 * 24 23 22 43 43 H 1.07997 * 126.29817 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5821 -0.2525 2.5244 6 6 2.6187 0.6680 3.1152 7 1 3.5128 0.9036 2.5570 8 6 2.4252 1.2104 4.3679 9 7 1.3362 0.9240 5.0474 10 14 3.7097 2.3521 5.1000 11 1 3.8800 3.5354 4.2192 12 1 3.2676 2.7961 6.4463 13 1 5.0031 1.6318 5.2168 14 6 2.8689 -1.7291 1.0748 15 8 3.2924 -2.0440 -0.0224 16 6 3.2832 -2.4779 2.2614 17 6 4.0482 -3.6246 2.2688 18 6 4.2020 -3.9984 3.6068 19 6 3.5334 -3.0765 4.3613 20 6 3.4307 -3.0811 5.8345 21 6 4.0033 -4.0284 6.7107 22 7 3.6851 -3.6954 7.9321 23 7 2.9091 -2.5313 7.8960 24 6 2.3533 -1.8354 9.0592 25 6 2.7601 -2.1597 6.6103 26 8 2.9798 -2.1684 3.5408 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9562 0.8900 34 1 0.6329 0.2764 2.4389 35 1 1.4570 -1.1213 3.1706 36 1 1.1999 1.3059 5.9286 37 1 4.4517 -4.1353 1.4069 38 1 4.7477 -4.8545 3.9751 39 1 4.5969 -4.8828 6.4206 40 1 1.3628 -2.2328 9.2813 41 1 3.0063 -1.9859 9.9189 42 1 2.2770 -0.7698 8.8428 43 1 2.2131 -1.3000 6.2525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569555826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:07 Heat of formation + Delta-G solvation = 60.232672 kcal Electronic energy + Delta-G solvation = -27459.439685 eV Core-core repulsion = 23701.591506 eV Total energy + Delta-G solvation = -3757.848179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.89472 -40.77862 -38.93248 -35.86116 -33.49771 -33.00473 -32.29919 -31.54254 -30.71999 -28.36102 -27.24996 -26.67561 -26.37500 -23.32271 -22.93511 -21.78835 -20.86540 -20.01787 -19.70545 -18.68762 -17.20431 -16.77801 -16.46728 -15.68273 -15.58414 -15.17089 -14.96958 -14.50797 -14.23291 -13.99799 -13.62916 -13.13477 -12.85378 -12.75909 -12.68546 -12.57912 -12.46432 -12.39671 -12.36265 -11.78746 -11.68288 -11.54553 -11.27013 -11.04368 -10.80733 -10.74293 -10.66297 -10.32292 -10.00356 -9.69501 -9.51499 -9.41452 -9.33168 -9.06818 -8.54704 -7.80564 -7.17520 -6.19326 -4.22150 1.49418 2.10251 2.57187 2.57867 3.20288 3.22193 3.29761 3.35769 3.57728 3.94223 3.96417 4.32102 4.56121 5.11862 5.14289 5.18238 5.24972 5.26951 5.42721 5.44495 5.50107 5.60184 5.66193 5.79707 5.81388 5.96755 6.09222 6.14571 6.24219 6.32507 6.39156 6.40143 6.42657 6.67791 6.72595 6.79128 6.96864 6.99418 7.10045 7.31153 7.51705 7.67565 7.76029 7.82353 8.07330 8.25498 8.78137 8.92309 9.41880 10.87025 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.005857 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.986095 B = 4779.465517 C = 6332.348752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.154 4.154 4 N -0.582 5.582 5 C 0.230 3.770 6 C -0.510 4.510 7 H 0.058 0.942 8 C 0.069 3.931 9 N -0.897 5.897 10 Si 0.882 3.118 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.599 3.401 15 O -0.561 6.561 16 C -0.064 4.064 17 C -0.135 4.135 18 C -0.231 4.231 19 C 0.101 3.899 20 C -0.188 4.188 21 C 0.081 3.919 22 N -0.308 5.308 23 N -0.371 5.371 24 C 0.101 3.899 25 C 0.105 3.895 26 O -0.103 6.103 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.261 0.739 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.188 0.812 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 -5.016 2.877 5.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 C -0.212 4.212 4 N -0.311 5.311 5 C 0.111 3.889 6 C -0.549 4.549 7 H 0.076 0.924 8 C -0.132 4.132 9 N -0.537 5.537 10 Si 0.710 3.290 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.388 3.612 15 O -0.444 6.444 16 C -0.117 4.117 17 C -0.156 4.156 18 C -0.251 4.251 19 C 0.045 3.955 20 C -0.200 4.200 21 C -0.106 4.106 22 N -0.129 5.129 23 N -0.150 5.150 24 C -0.040 4.040 25 C -0.044 4.044 26 O 0.004 5.996 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.205 0.795 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.546 -5.037 3.978 6.442 hybrid contribution 0.749 0.946 -0.223 1.227 sum 0.203 -4.091 3.755 5.557 Atomic orbital electron populations 1.22138 0.95423 1.01838 1.02307 1.20909 0.93620 0.93534 0.88637 1.22080 1.01432 0.95699 1.01966 1.48262 1.43862 1.29508 1.09517 1.19678 0.96172 0.96316 0.76712 1.21407 1.05191 1.27082 1.01208 0.92424 1.24770 0.95330 0.96399 0.96662 1.69947 1.25821 1.44940 1.12966 0.86793 0.82327 0.81562 0.78335 1.20102 1.21240 1.20167 1.16598 0.79066 0.80017 0.85551 1.90758 1.57943 1.70215 1.25532 1.22207 1.06998 0.99534 0.82957 1.21833 1.00197 0.96031 0.97566 1.21351 1.08272 1.03075 0.92399 1.19901 0.96760 0.90041 0.88776 1.18002 1.11936 1.01360 0.88699 1.23789 0.98952 0.99039 0.88846 1.77090 1.13679 1.00566 1.21549 1.48282 1.40144 1.20502 1.06099 1.21922 0.99145 0.96880 0.86097 1.23676 0.97775 0.99690 0.83231 1.84784 1.56777 1.43095 1.14939 0.91444 0.92139 0.92860 0.89436 0.92790 0.93051 0.90694 0.93910 0.92990 0.92980 0.83118 0.83620 0.79544 0.90495 0.89368 0.88959 0.78197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.10 37.15 0.34 -2.17 16 2 C 0.14 2.51 3.24 -67.93 -0.22 2.29 16 3 C -0.15 -2.70 8.92 37.16 0.33 -2.37 16 4 N -0.58 -12.47 2.38 -169.14 -0.40 -12.87 16 5 C 0.23 5.34 4.12 -5.20 -0.02 5.32 16 6 C -0.51 -12.75 7.51 -34.44 -0.26 -13.01 16 7 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -22.24 12.98 55.43 0.72 -21.52 16 10 Si 0.88 19.94 29.54 -169.99 -5.02 14.92 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.60 13.39 7.57 -13.01 -0.10 13.29 16 15 O -0.56 -13.11 16.22 5.14 0.08 -13.03 16 16 C -0.06 -1.36 6.78 -36.48 -0.25 -1.61 16 17 C -0.14 -2.50 10.65 -39.15 -0.42 -2.92 16 18 C -0.23 -3.90 10.56 -39.60 -0.42 -4.32 16 19 C 0.10 1.92 7.16 -36.32 -0.26 1.66 16 20 C -0.19 -3.33 6.12 -105.07 -0.64 -3.97 16 21 C 0.08 1.21 11.76 -16.99 -0.20 1.01 16 22 N -0.31 -4.88 12.51 30.85 0.39 -4.49 16 23 N -0.37 -5.71 3.99 -67.55 -0.27 -5.98 16 24 C 0.10 1.09 11.45 59.85 0.69 1.78 16 25 C 0.10 1.86 11.51 -16.45 -0.19 1.67 16 26 O -0.10 -2.26 6.63 3.44 0.02 -2.24 16 27 H 0.07 1.13 6.50 -51.93 -0.34 0.79 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 30 H 0.09 1.63 6.93 -51.93 -0.36 1.27 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.44 7.29 -51.93 -0.38 1.07 16 34 H 0.04 1.02 6.20 -51.93 -0.32 0.70 16 35 H 0.05 1.29 5.36 -51.93 -0.28 1.01 16 36 H 0.26 6.15 8.31 -40.82 -0.34 5.81 16 37 H 0.15 2.50 8.06 -52.48 -0.42 2.07 16 38 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.19 2.11 8.06 -52.48 -0.42 1.68 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.20 3.89 7.75 -52.49 -0.41 3.49 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -29.37 364.78 -6.56 -35.93 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.86 Total: 5.52 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.72 Total: -1.73 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.43 Total: -44.87 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.11 Total: -15.27 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.37 -6.56 -35.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569555826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.160 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds