Wall clock time and date at job start Tue Mar 31 2020 11:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47087 * 2 1 4 4 N 1.46507 * 109.46997 * 119.99960 * 2 1 3 5 5 C 1.46495 * 120.00177 * 304.66563 * 4 2 1 6 6 C 1.50700 * 109.47049 * 263.33533 * 5 4 2 7 7 H 1.08004 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99936 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00022 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47162 * 59.99812 * 10 8 6 12 12 H 1.48495 * 109.46981 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46637 * 299.99803 * 10 8 6 14 14 C 1.34782 * 119.99700 * 124.66667 * 4 2 1 15 15 O 1.21749 * 120.00214 * 4.27412 * 14 4 2 16 16 C 1.46306 * 119.99943 * 184.27416 * 14 4 2 17 17 C 1.37844 * 125.96626 * 173.93248 * 16 14 4 18 18 C 1.39774 * 106.77733 * 179.97438 * 17 16 14 19 19 C 1.36607 * 107.12281 * 359.97438 * 18 17 16 20 20 C 1.47679 * 125.65556 * 179.97438 * 19 18 17 21 21 C 1.41168 * 126.37227 * 0.17021 * 20 19 18 22 22 N 1.30539 * 108.10040 * 180.27088 * 21 20 19 23 23 N 1.39953 * 108.85594 * 359.74508 * 22 21 20 24 24 C 1.46499 * 125.80189 * 180.02562 * 23 22 21 25 25 C 1.34659 * 108.39173 * 0.02562 * 23 22 21 26 26 O 1.34328 * 108.69631 * 0.23997 * 19 18 17 27 27 H 1.09005 * 109.47086 * 299.99939 * 1 2 3 28 28 H 1.08994 * 109.47450 * 60.00376 * 1 2 3 29 29 H 1.09007 * 109.47080 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47274 * 239.99600 * 2 1 3 31 31 H 1.09002 * 109.47140 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47131 * 299.99844 * 3 2 1 33 33 H 1.08996 * 109.47004 * 60.00294 * 3 2 1 34 34 H 1.09002 * 109.46868 * 23.33235 * 5 4 2 35 35 H 1.08998 * 109.47181 * 143.33412 * 5 4 2 36 36 H 0.96997 * 119.99991 * 180.02562 * 9 8 6 37 37 H 1.08003 * 126.61463 * 0.02562 * 17 16 14 38 38 H 1.07995 * 126.44280 * 180.02562 * 18 17 16 39 39 H 1.08004 * 125.95064 * 359.97438 * 21 20 19 40 40 H 1.09006 * 109.47110 * 269.97265 * 24 23 22 41 41 H 1.08999 * 109.47423 * 29.97325 * 24 23 22 42 42 H 1.09003 * 109.47204 * 149.98024 * 24 23 22 43 43 H 1.07997 * 126.29817 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5821 -0.2525 2.5244 6 6 2.6187 0.6680 3.1152 7 1 3.5128 0.9036 2.5570 8 6 2.4252 1.2104 4.3679 9 7 1.3362 0.9240 5.0474 10 14 3.7097 2.3521 5.1000 11 1 3.8800 3.5354 4.2192 12 1 3.2676 2.7961 6.4463 13 1 5.0031 1.6318 5.2168 14 6 2.8689 -1.7291 1.0748 15 8 3.2924 -2.0440 -0.0224 16 6 3.2832 -2.4779 2.2614 17 6 4.0482 -3.6246 2.2688 18 6 4.2020 -3.9984 3.6068 19 6 3.5334 -3.0765 4.3613 20 6 3.4307 -3.0811 5.8345 21 6 4.0033 -4.0284 6.7107 22 7 3.6851 -3.6954 7.9321 23 7 2.9091 -2.5313 7.8960 24 6 2.3533 -1.8354 9.0592 25 6 2.7601 -2.1597 6.6103 26 8 2.9798 -2.1684 3.5408 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9562 0.8900 34 1 0.6329 0.2764 2.4389 35 1 1.4570 -1.1213 3.1706 36 1 1.1999 1.3059 5.9286 37 1 4.4517 -4.1353 1.4069 38 1 4.7477 -4.8545 3.9751 39 1 4.5969 -4.8828 6.4206 40 1 1.3628 -2.2328 9.2813 41 1 3.0063 -1.9859 9.9189 42 1 2.2770 -0.7698 8.8428 43 1 2.2131 -1.3000 6.2525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569555826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:06 Heat of formation + Delta-G solvation = 44.347356 kcal Electronic energy + Delta-G solvation = -27460.128524 eV Core-core repulsion = 23701.591506 eV Total energy + Delta-G solvation = -3758.537018 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.37599 -42.02257 -40.59371 -37.52669 -34.91841 -34.60251 -33.71951 -33.14372 -32.08403 -29.70233 -29.09195 -28.05293 -27.54822 -25.04827 -24.53020 -23.12388 -22.25467 -21.29632 -21.12427 -20.26219 -18.81884 -18.38115 -18.12692 -17.29995 -17.10120 -16.47753 -16.38041 -16.17568 -15.63705 -15.39547 -15.08716 -14.74940 -14.28360 -14.17261 -13.97754 -13.93658 -13.86264 -13.72796 -13.62729 -13.29630 -13.13763 -13.01730 -12.89033 -12.78042 -12.48141 -12.28366 -12.08909 -11.94859 -11.65490 -11.49926 -11.12547 -10.92414 -10.54856 -10.48622 -10.44286 -9.51795 -8.59100 -8.11956 -6.20011 -0.00433 0.78181 1.24985 1.36487 1.37544 1.44786 1.45273 1.88820 2.22624 2.29302 2.35831 2.48305 3.17213 3.43056 3.72142 3.97636 4.03775 4.10828 4.15048 4.25389 4.28033 4.37848 4.41064 4.59298 4.63664 4.65438 4.67426 4.79670 4.81590 4.91890 4.96939 4.99668 5.06607 5.14239 5.29964 5.44776 5.46586 5.48946 5.64995 5.77138 5.84990 5.88850 6.15342 6.21578 6.49844 6.57615 6.86363 7.19958 7.45834 8.93899 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.005857 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.986095 B = 4779.465517 C = 6332.348752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 C -0.144 4.144 4 N -0.586 5.586 5 C 0.251 3.749 6 C -0.518 4.518 7 H 0.036 0.964 8 C 0.043 3.957 9 N -0.906 5.906 10 Si 0.926 3.074 11 H -0.277 1.277 12 H -0.273 1.273 13 H -0.287 1.287 14 C 0.590 3.410 15 O -0.581 6.581 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.215 4.215 19 C 0.086 3.914 20 C -0.208 4.208 21 C 0.092 3.908 22 N -0.315 5.315 23 N -0.367 5.367 24 C 0.090 3.910 25 C 0.088 3.912 26 O -0.131 6.131 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.170 0.830 38 H 0.190 0.810 39 H 0.226 0.774 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 -5.901 3.701 6.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.202 4.202 4 N -0.314 5.314 5 C 0.131 3.869 6 C -0.557 4.557 7 H 0.055 0.945 8 C -0.157 4.157 9 N -0.546 5.546 10 Si 0.753 3.247 11 H -0.203 1.203 12 H -0.198 1.198 13 H -0.213 1.213 14 C 0.381 3.619 15 O -0.466 6.466 16 C -0.162 4.162 17 C -0.142 4.142 18 C -0.234 4.234 19 C 0.032 3.968 20 C -0.220 4.220 21 C -0.095 4.095 22 N -0.136 5.136 23 N -0.147 5.147 24 C -0.050 4.050 25 C -0.062 4.062 26 O -0.025 6.025 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.187 0.813 38 H 0.207 0.793 39 H 0.243 0.757 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.084 -5.905 4.823 7.625 hybrid contribution 0.597 1.192 -0.407 1.394 sum 0.514 -4.713 4.416 6.479 Atomic orbital electron populations 1.22062 0.93218 1.02129 1.03278 1.21197 0.95423 0.93554 0.87438 1.21993 1.00134 0.95373 1.02704 1.48332 1.43746 1.29623 1.09746 1.19266 0.95157 0.95061 0.77368 1.21354 1.04876 1.27869 1.01575 0.94548 1.25186 0.96558 0.97212 0.96766 1.69980 1.26353 1.45073 1.13228 0.86117 0.80212 0.80009 0.78337 1.20275 1.19754 1.21330 1.16853 0.78963 0.80193 0.85933 1.90716 1.58793 1.70899 1.26213 1.22279 1.09741 1.01356 0.82788 1.22201 0.98308 0.94622 0.99071 1.21785 1.07179 1.03382 0.91067 1.20476 0.96767 0.90082 0.89518 1.18229 1.12958 1.02475 0.88296 1.24329 0.98264 0.99197 0.87692 1.77072 1.13827 1.00690 1.21997 1.48621 1.39533 1.20321 1.06188 1.22281 1.00396 0.96998 0.85285 1.23430 0.98490 0.99601 0.84692 1.84719 1.57860 1.44513 1.15396 0.92771 0.88732 0.92922 0.89509 0.94669 0.89369 0.92743 0.94900 0.94630 0.92445 0.81268 0.79271 0.75745 0.88726 0.87400 0.88503 0.80452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 9.10 71.98 0.65 -3.96 16 2 C 0.13 4.69 3.24 44.99 0.15 4.84 16 3 C -0.14 -5.09 8.92 71.98 0.64 -4.45 16 4 N -0.59 -25.97 2.38 -807.22 -1.92 -27.89 16 5 C 0.25 12.14 4.12 85.63 0.35 12.49 16 6 C -0.52 -26.81 7.51 25.60 0.19 -26.61 16 7 H 0.04 2.00 7.81 -2.91 -0.02 1.98 16 8 C 0.04 2.18 5.46 84.65 0.46 2.64 16 9 N -0.91 -45.66 12.98 21.45 0.28 -45.38 16 10 Si 0.93 41.26 29.54 68.60 2.03 43.29 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 14 C 0.59 27.23 7.57 86.34 0.65 27.88 16 15 O -0.58 -27.70 16.22 -4.51 -0.07 -27.77 16 16 C -0.11 -4.77 6.78 24.28 0.16 -4.61 16 17 C -0.12 -4.37 10.65 22.55 0.24 -4.13 16 18 C -0.22 -6.78 10.56 22.26 0.24 -6.55 16 19 C 0.09 3.27 7.16 24.38 0.17 3.44 16 20 C -0.21 -7.18 6.12 -20.15 -0.12 -7.30 16 21 C 0.09 2.52 11.76 85.60 1.01 3.53 16 22 N -0.32 -9.28 12.51 -56.31 -0.70 -9.99 16 23 N -0.37 -10.90 3.99 -367.61 -1.47 -12.37 16 24 C 0.09 1.81 11.45 127.77 1.46 3.27 16 25 C 0.09 3.13 11.51 84.17 0.97 4.10 16 26 O -0.13 -5.90 6.63 -10.61 -0.07 -5.97 16 27 H 0.05 1.82 6.50 -2.38 -0.02 1.80 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.09 3.24 6.93 -2.39 -0.02 3.23 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 33 H 0.05 2.13 7.29 -2.39 -0.02 2.12 16 34 H 0.03 1.64 6.20 -2.39 -0.01 1.62 16 35 H 0.04 1.87 5.36 -2.39 -0.01 1.86 16 36 H 0.27 12.60 8.31 -92.71 -0.77 11.83 16 37 H 0.17 5.33 8.06 -2.91 -0.02 5.30 16 38 H 0.19 4.14 8.06 -2.91 -0.02 4.12 16 39 H 0.23 4.11 8.06 -2.91 -0.02 4.09 16 40 H 0.09 1.57 8.14 -2.38 -0.02 1.56 16 41 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.18 7.18 7.75 -2.91 -0.02 7.16 16 Total: -1.00 -64.99 364.78 6.33 -58.66 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 1.02 Total: 22.82 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 7.23 Total: 4.59 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -3.81 Total: -95.62 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.14 Total: -33.74 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -64.99 6.33 -58.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569555826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.008 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds