Wall clock time and date at job start Tue Mar 31 2020 11:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46921 * 2 1 4 4 N 1.46499 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.46763 * 124.35343 * 89.99687 * 4 3 2 6 6 C 1.54477 * 105.47325 * 162.98556 * 5 4 3 7 7 H 1.09004 * 110.96908 * 267.26016 * 6 5 4 8 8 C 1.50704 * 110.96944 * 143.53568 * 6 5 4 9 9 O 1.21277 * 119.99892 * 359.97438 * 8 6 5 10 10 N 1.34774 * 120.00217 * 179.97438 * 8 6 5 11 11 C 1.39467 * 120.00148 * 175.12601 * 10 8 6 12 12 C 1.38600 * 119.58026 * 184.90276 * 11 10 8 13 13 C 1.40814 * 118.79404 * 179.74150 * 12 11 10 14 14 C 1.41538 * 120.99498 * 180.23424 * 13 12 11 15 15 H 1.08001 * 120.00228 * 203.99484 * 14 13 12 16 16 C 1.40028 * 120.00322 * 23.99762 * 14 13 12 17 17 N 1.30742 * 119.99777 * 16.67838 * 16 14 13 18 18 Si 1.86797 * 120.00292 * 196.67838 * 16 14 13 19 19 H 1.48504 * 109.47302 * 94.65781 * 18 16 14 20 20 H 1.48504 * 109.46933 * 214.65834 * 18 16 14 21 21 H 1.48501 * 109.47003 * 334.65694 * 18 16 14 22 22 C 1.41176 * 118.00802 * 0.51915 * 13 12 11 23 23 C 1.37597 * 119.01318 * 359.73743 * 22 13 12 24 24 N 1.32080 * 121.10832 * 0.02562 * 23 22 13 25 25 C 1.54623 * 101.76772 * 25.41731 * 6 5 4 26 26 C 1.34423 * 124.34867 * 269.70267 * 4 3 2 27 27 O 1.21288 * 124.93738 * 0.38331 * 26 4 3 28 28 H 1.08997 * 109.47472 * 60.00051 * 1 2 3 29 29 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46875 * 299.99472 * 1 2 3 31 31 H 1.08998 * 109.46875 * 240.00528 * 2 1 3 32 32 H 1.08997 * 109.47472 * 119.99949 * 2 1 3 33 33 H 1.09005 * 109.46793 * 299.99978 * 3 2 1 34 34 H 1.08993 * 109.47465 * 60.00088 * 3 2 1 35 35 H 1.08997 * 110.24571 * 281.98986 * 5 4 3 36 36 H 1.09002 * 110.24425 * 43.98170 * 5 4 3 37 37 H 0.97003 * 119.99672 * 355.12913 * 10 8 6 38 38 H 1.07993 * 120.59920 * 359.97438 * 12 11 10 39 39 H 0.97001 * 120.00178 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.49233 * 179.75969 * 22 13 12 41 41 H 1.07996 * 119.44296 * 179.97438 * 23 22 13 42 42 H 1.08997 * 110.49007 * 93.87872 * 25 6 5 43 43 H 1.09000 * 110.48971 * 216.52581 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3326 1.4428 -1.2126 6 6 5.7406 1.8784 -0.7501 7 1 5.8666 2.9568 -0.8467 8 6 6.8110 1.1425 -1.5142 9 8 6.5024 0.3324 -2.3622 10 7 8.1113 1.3848 -1.2552 11 6 9.1004 0.6326 -1.8883 12 6 10.4291 0.8185 -1.5406 13 6 11.4137 0.0462 -2.1864 14 6 12.7838 0.1944 -1.8640 15 1 13.5408 -0.0817 -2.5832 16 6 13.1581 0.6991 -0.6126 17 7 12.2920 0.7275 0.3664 18 14 14.8947 1.3318 -0.3419 19 1 14.9254 2.8010 -0.5564 20 1 15.3223 1.0252 1.0468 21 1 15.8169 0.6722 -1.3009 22 6 10.9937 -0.8759 -3.1695 23 6 9.6514 -0.9862 -3.4509 24 7 8.7585 -0.2463 -2.8187 25 6 5.7300 1.4527 0.7364 26 6 4.2638 1.4482 1.1089 27 8 3.8353 1.4473 2.2435 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 4.3699 0.4425 -1.6440 36 1 3.9376 2.1530 -1.9390 37 1 8.3591 2.0823 -0.6283 38 1 10.7039 1.5398 -0.7853 39 1 12.5513 1.0767 1.2334 40 1 11.7153 -1.4858 -3.6926 41 1 9.3225 -1.6891 -4.2020 42 1 6.1597 0.4576 0.8513 43 1 6.2730 2.1763 1.3444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571860342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:07 Heat of formation + Delta-G solvation = -39.471245 kcal Electronic energy + Delta-G solvation = -25815.726355 eV Core-core repulsion = 22053.554690 eV Total energy + Delta-G solvation = -3762.171665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87674 -39.42769 -37.90053 -36.43030 -34.93217 -34.42301 -33.83071 -31.68958 -30.59773 -28.73964 -27.76180 -26.50063 -26.05274 -23.66771 -22.05119 -21.98117 -21.20852 -19.72216 -19.44063 -17.74827 -17.56574 -16.90172 -16.19131 -15.73783 -15.45350 -15.15421 -14.95543 -14.62300 -14.27542 -14.09254 -13.96898 -13.68033 -13.61735 -13.36895 -12.97798 -12.83544 -12.64921 -12.40093 -12.29313 -12.02306 -11.66580 -11.55318 -11.49013 -11.39930 -11.28182 -10.96346 -10.94557 -10.35161 -10.21695 -10.00183 -9.84985 -9.47557 -9.41564 -8.85214 -8.07256 -7.81362 -7.11907 -6.88086 -4.67432 2.41472 2.47612 2.72805 2.78040 2.98488 3.01985 3.10629 3.31855 3.45348 3.80184 4.15264 4.27410 4.59741 4.69029 4.70397 4.72795 4.82180 5.00768 5.12161 5.17263 5.31849 5.36453 5.44202 5.52900 5.61165 5.65113 5.75465 5.82528 5.85523 5.92372 5.99933 6.38112 6.50227 6.56523 6.74240 6.87677 6.94123 7.03837 7.31127 7.37486 7.67618 7.84632 8.03863 8.12620 8.34101 8.61594 8.67860 8.75585 9.60494 10.00087 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.002738 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.426991 B =10225.271016 C =11136.826307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.124 4.124 7 H 0.115 0.885 8 C 0.511 3.489 9 O -0.475 6.475 10 N -0.653 5.653 11 C 0.335 3.665 12 C -0.242 4.242 13 C 0.143 3.857 14 C -0.454 4.454 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.786 5.786 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.283 4.283 23 C 0.119 3.881 24 N -0.556 5.556 25 C -0.145 4.145 26 C 0.522 3.478 27 O -0.533 6.533 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.409 0.591 38 H 0.128 0.872 39 H 0.283 0.717 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.879 5.053 0.593 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.005 4.005 6 C -0.146 4.146 7 H 0.133 0.867 8 C 0.294 3.706 9 O -0.345 6.345 10 N -0.298 5.298 11 C 0.110 3.890 12 C -0.268 4.268 13 C 0.134 3.866 14 C -0.485 4.485 15 H 0.101 0.899 16 C -0.141 4.141 17 N -0.411 5.411 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.307 4.307 23 C -0.035 4.035 24 N -0.275 5.275 25 C -0.185 4.185 26 C 0.309 3.691 27 O -0.410 6.410 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.244 0.756 38 H 0.146 0.854 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.411 4.425 0.626 16.046 hybrid contribution 1.936 0.716 0.744 2.194 sum -13.475 5.141 1.369 14.487 Atomic orbital electron populations 1.21686 0.95007 1.02078 1.01853 1.21932 0.96213 0.97130 1.02995 1.21440 0.77719 0.97210 1.03082 1.48351 1.06279 1.73379 1.07369 1.22001 0.87812 1.04069 0.86665 1.22277 0.94767 1.02295 0.95302 0.86719 1.20035 0.83076 0.83647 0.83865 1.90796 1.80994 1.32308 1.30436 1.43362 1.04838 1.37041 1.44597 1.18154 0.85927 0.92340 0.92531 1.21542 0.89849 1.06859 1.08521 1.17573 0.93305 0.87243 0.88450 1.19603 0.92185 1.37245 0.99492 0.89903 1.25966 0.99854 0.92952 0.95374 1.69771 1.36468 1.32668 1.02224 0.86234 0.81745 0.79936 0.78483 1.19207 1.20149 1.18423 1.21903 0.95914 1.05337 1.07569 1.21753 0.89335 0.95864 0.96538 1.67194 1.37682 1.11005 1.11628 1.22350 0.95261 1.05831 0.95089 1.20804 0.88996 0.74898 0.84355 1.90720 1.78627 1.50588 1.21068 0.92551 0.92367 0.92558 0.91414 0.91523 0.90288 0.90036 0.88767 0.89804 0.75614 0.85421 0.90637 0.87959 0.85860 0.87018 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.14 -1.32 6.26 -26.73 -0.17 -1.49 16 3 C 0.13 1.18 5.93 -4.04 -0.02 1.16 16 4 N -0.62 -6.96 2.93 -172.42 -0.51 -7.47 16 5 C 0.12 1.27 6.71 -3.12 -0.02 1.25 16 6 C -0.12 -1.40 3.54 -90.14 -0.32 -1.72 16 7 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 8 C 0.51 8.39 7.02 -10.98 -0.08 8.32 16 9 O -0.48 -9.74 13.76 5.56 0.08 -9.66 16 10 N -0.65 -11.55 5.39 -11.49 -0.06 -11.61 16 11 C 0.33 7.65 7.42 -154.71 -1.15 6.50 16 12 C -0.24 -5.87 8.62 -38.47 -0.33 -6.20 16 13 C 0.14 3.63 5.60 -106.55 -0.60 3.03 16 14 C -0.45 -11.33 9.12 -37.65 -0.34 -11.67 16 15 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 16 C 0.08 1.82 5.20 -17.34 -0.09 1.73 16 17 N -0.79 -18.76 10.92 55.55 0.61 -18.15 16 18 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 C -0.28 -6.74 9.90 -38.70 -0.38 -7.12 16 23 C 0.12 2.76 11.15 -17.68 -0.20 2.56 16 24 N -0.56 -13.50 7.85 -12.52 -0.10 -13.60 16 25 C -0.14 -1.68 6.41 -26.75 -0.17 -1.85 16 26 C 0.52 6.99 8.02 -10.86 -0.09 6.91 16 27 O -0.53 -8.96 17.59 5.55 0.10 -8.86 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 35 H 0.09 1.20 6.96 -51.93 -0.36 0.84 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.41 5.82 8.70 -40.82 -0.35 5.46 16 38 H 0.13 3.06 6.20 -52.49 -0.33 2.74 16 39 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 40 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 41 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 42 H 0.11 1.44 7.89 -51.93 -0.41 1.03 16 43 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -31.94 363.44 -9.09 -41.03 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.06 Total: 9.74 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.59 Total: 0.70 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.06 Total: -50.82 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.17 Total: -18.52 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.94 -9.09 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571860342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.555 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds