Wall clock time and date at job start Tue Mar 31 2020 11:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46921 * 2 1 4 4 N 1.46499 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.46763 * 124.35343 * 89.99687 * 4 3 2 6 6 C 1.54477 * 105.47325 * 162.98556 * 5 4 3 7 7 H 1.09004 * 110.96908 * 267.26016 * 6 5 4 8 8 C 1.50704 * 110.96944 * 143.53568 * 6 5 4 9 9 O 1.21277 * 119.99892 * 359.97438 * 8 6 5 10 10 N 1.34774 * 120.00217 * 179.97438 * 8 6 5 11 11 C 1.39467 * 120.00148 * 175.12601 * 10 8 6 12 12 C 1.38600 * 119.58026 * 184.90276 * 11 10 8 13 13 C 1.40814 * 118.79404 * 179.74150 * 12 11 10 14 14 C 1.41538 * 120.99498 * 180.23424 * 13 12 11 15 15 H 1.08001 * 120.00228 * 203.99484 * 14 13 12 16 16 C 1.40028 * 120.00322 * 23.99762 * 14 13 12 17 17 N 1.30742 * 119.99777 * 16.67838 * 16 14 13 18 18 Si 1.86797 * 120.00292 * 196.67838 * 16 14 13 19 19 H 1.48504 * 109.47302 * 94.65781 * 18 16 14 20 20 H 1.48504 * 109.46933 * 214.65834 * 18 16 14 21 21 H 1.48501 * 109.47003 * 334.65694 * 18 16 14 22 22 C 1.41176 * 118.00802 * 0.51915 * 13 12 11 23 23 C 1.37597 * 119.01318 * 359.73743 * 22 13 12 24 24 N 1.32080 * 121.10832 * 0.02562 * 23 22 13 25 25 C 1.54623 * 101.76772 * 25.41731 * 6 5 4 26 26 C 1.34423 * 124.34867 * 269.70267 * 4 3 2 27 27 O 1.21288 * 124.93738 * 0.38331 * 26 4 3 28 28 H 1.08997 * 109.47472 * 60.00051 * 1 2 3 29 29 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46875 * 299.99472 * 1 2 3 31 31 H 1.08998 * 109.46875 * 240.00528 * 2 1 3 32 32 H 1.08997 * 109.47472 * 119.99949 * 2 1 3 33 33 H 1.09005 * 109.46793 * 299.99978 * 3 2 1 34 34 H 1.08993 * 109.47465 * 60.00088 * 3 2 1 35 35 H 1.08997 * 110.24571 * 281.98986 * 5 4 3 36 36 H 1.09002 * 110.24425 * 43.98170 * 5 4 3 37 37 H 0.97003 * 119.99672 * 355.12913 * 10 8 6 38 38 H 1.07993 * 120.59920 * 359.97438 * 12 11 10 39 39 H 0.97001 * 120.00178 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.49233 * 179.75969 * 22 13 12 41 41 H 1.07996 * 119.44296 * 179.97438 * 23 22 13 42 42 H 1.08997 * 110.49007 * 93.87872 * 25 6 5 43 43 H 1.09000 * 110.48971 * 216.52581 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3326 1.4428 -1.2126 6 6 5.7406 1.8784 -0.7501 7 1 5.8666 2.9568 -0.8467 8 6 6.8110 1.1425 -1.5142 9 8 6.5024 0.3324 -2.3622 10 7 8.1113 1.3848 -1.2552 11 6 9.1004 0.6326 -1.8883 12 6 10.4291 0.8185 -1.5406 13 6 11.4137 0.0462 -2.1864 14 6 12.7838 0.1944 -1.8640 15 1 13.5408 -0.0817 -2.5832 16 6 13.1581 0.6991 -0.6126 17 7 12.2920 0.7275 0.3664 18 14 14.8947 1.3318 -0.3419 19 1 14.9254 2.8010 -0.5564 20 1 15.3223 1.0252 1.0468 21 1 15.8169 0.6722 -1.3009 22 6 10.9937 -0.8759 -3.1695 23 6 9.6514 -0.9862 -3.4509 24 7 8.7585 -0.2463 -2.8187 25 6 5.7300 1.4527 0.7364 26 6 4.2638 1.4482 1.1089 27 8 3.8353 1.4473 2.2435 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 4.3699 0.4425 -1.6440 36 1 3.9376 2.1530 -1.9390 37 1 8.3591 2.0823 -0.6283 38 1 10.7039 1.5398 -0.7853 39 1 12.5513 1.0767 1.2334 40 1 11.7153 -1.4858 -3.6926 41 1 9.3225 -1.6891 -4.2020 42 1 6.1597 0.4576 0.8513 43 1 6.2730 2.1763 1.3444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571860342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:06 Heat of formation + Delta-G solvation = -58.615695 kcal Electronic energy + Delta-G solvation = -25816.556521 eV Core-core repulsion = 22053.554690 eV Total energy + Delta-G solvation = -3763.001831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98734 -40.87104 -39.50377 -37.51149 -36.14274 -35.76905 -35.47067 -32.67513 -32.36702 -30.37343 -28.76402 -27.90964 -27.30707 -24.85978 -23.82439 -22.79271 -22.67675 -21.11957 -20.45570 -19.44755 -18.80419 -17.93222 -17.58351 -17.06960 -16.89119 -16.40658 -16.12881 -16.05393 -15.70565 -15.56450 -15.10067 -14.83578 -14.72645 -14.60859 -14.38121 -14.29473 -13.91929 -13.75289 -13.17190 -13.08356 -12.92851 -12.77643 -12.67172 -12.54501 -12.45873 -12.21474 -12.04999 -11.89837 -11.68106 -11.48608 -11.20379 -11.13677 -10.83850 -9.93866 -9.79883 -9.59000 -8.85871 -8.64064 -6.55339 0.74144 1.00559 1.42199 1.42367 1.54617 1.55147 1.81487 1.83039 2.17520 2.20825 2.80658 3.13364 3.31380 3.63833 3.76501 3.82423 3.98247 4.01914 4.07573 4.29333 4.32281 4.47723 4.52020 4.60058 4.63884 4.74749 4.78108 4.84511 4.87120 4.93358 4.94983 5.10521 5.13496 5.15443 5.23365 5.30972 5.49451 5.53744 5.64944 5.91894 5.98978 6.15166 6.47344 6.61130 6.80383 6.84117 7.02686 7.27646 7.84056 8.26288 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.002738 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.426991 B =10225.271016 C =11136.826307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.613 5.613 5 C 0.119 3.881 6 C -0.105 4.105 7 H 0.156 0.844 8 C 0.512 3.488 9 O -0.516 6.516 10 N -0.647 5.647 11 C 0.335 3.665 12 C -0.260 4.260 13 C 0.113 3.887 14 C -0.484 4.484 15 H 0.082 0.918 16 C 0.041 3.959 17 N -0.809 5.809 18 Si 0.985 3.015 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.300 4.300 23 C 0.114 3.886 24 N -0.577 5.577 25 C -0.141 4.141 26 C 0.516 3.484 27 O -0.573 6.573 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.425 0.575 38 H 0.125 0.875 39 H 0.293 0.707 40 H 0.113 0.887 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.296 6.721 0.565 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.345 5.345 5 C -0.003 4.003 6 C -0.126 4.126 7 H 0.174 0.826 8 C 0.298 3.702 9 O -0.388 6.388 10 N -0.294 5.294 11 C 0.109 3.891 12 C -0.286 4.286 13 C 0.104 3.896 14 C -0.515 4.515 15 H 0.100 0.900 16 C -0.176 4.176 17 N -0.435 5.435 18 Si 0.806 3.194 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.323 4.323 23 C -0.040 4.040 24 N -0.297 5.297 25 C -0.181 4.181 26 C 0.305 3.695 27 O -0.453 6.453 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.263 0.737 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.167 0.833 42 H 0.114 0.886 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.861 6.109 0.590 17.007 hybrid contribution 1.990 0.135 0.736 2.126 sum -13.871 6.244 1.325 15.269 Atomic orbital electron populations 1.21658 0.93232 1.02507 1.02763 1.21892 0.97769 0.96877 1.01478 1.21658 0.76519 0.97370 1.04347 1.48458 1.07157 1.72003 1.06892 1.22040 0.87591 1.03897 0.86801 1.22219 0.92856 1.03704 0.93861 0.82607 1.20837 0.83159 0.82950 0.83284 1.90781 1.81527 1.34094 1.32438 1.43392 1.04684 1.36872 1.44410 1.18397 0.86797 0.91971 0.91909 1.21537 0.90508 1.07404 1.09136 1.18011 0.94194 0.88004 0.89353 1.19862 0.92205 1.38843 1.00552 0.89978 1.26779 1.03986 0.92399 0.94485 1.69797 1.38414 1.32411 1.02830 0.85135 0.76387 0.79384 0.78505 1.18400 1.19291 1.18374 1.22076 0.96609 1.05733 1.07916 1.22195 0.89159 0.95913 0.96687 1.67341 1.38075 1.11817 1.12452 1.22335 0.94461 1.05715 0.95585 1.21046 0.89793 0.74470 0.84200 1.90698 1.79334 1.52679 1.22631 0.90893 0.92243 0.92352 0.91763 0.94178 0.87202 0.90506 0.90813 0.86628 0.73729 0.85694 0.89633 0.86884 0.83335 0.88601 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.14 -2.49 6.26 30.59 0.19 -2.30 16 3 C 0.12 2.04 5.93 86.38 0.51 2.55 16 4 N -0.61 -12.68 2.93 -817.99 -2.40 -15.08 16 5 C 0.12 2.29 6.71 86.83 0.58 2.88 16 6 C -0.10 -2.09 3.54 -10.48 -0.04 -2.13 16 7 H 0.16 1.96 8.14 -2.38 -0.02 1.94 16 8 C 0.51 16.20 7.02 87.66 0.62 16.81 16 9 O -0.52 -20.93 13.76 -3.02 -0.04 -20.98 16 10 N -0.65 -22.33 5.39 -308.66 -1.66 -24.00 16 11 C 0.34 15.40 7.42 132.75 0.98 16.38 16 12 C -0.26 -12.82 8.62 22.99 0.20 -12.62 16 13 C 0.11 5.85 5.60 -21.11 -0.12 5.73 16 14 C -0.48 -24.51 9.12 23.52 0.21 -24.29 16 15 H 0.08 4.01 7.90 -2.91 -0.02 3.99 16 16 C 0.04 1.91 5.20 85.29 0.44 2.36 16 17 N -0.81 -38.54 10.92 21.84 0.24 -38.30 16 18 Si 0.99 35.08 29.59 68.60 2.03 37.11 16 19 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 20 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 22 C -0.30 -14.51 9.90 22.84 0.23 -14.28 16 23 C 0.11 5.32 11.15 84.50 0.94 6.26 16 24 N -0.58 -28.18 7.85 -193.53 -1.52 -29.70 16 25 C -0.14 -3.04 6.41 30.58 0.20 -2.84 16 26 C 0.52 13.31 8.02 87.90 0.70 14.01 16 27 O -0.57 -19.18 17.59 -3.06 -0.05 -19.24 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.08 1.40 7.92 -2.39 -0.02 1.38 16 35 H 0.07 1.80 6.96 -2.39 -0.02 1.78 16 36 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.42 11.50 8.70 -92.71 -0.81 10.70 16 38 H 0.13 6.08 6.20 -2.91 -0.02 6.07 16 39 H 0.29 12.44 8.29 -92.71 -0.77 11.67 16 40 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 41 H 0.15 5.94 8.06 -2.91 -0.02 5.92 16 42 H 0.10 2.43 7.89 -2.39 -0.02 2.41 16 43 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -71.08 363.44 3.19 -67.89 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.23 Total: 34.91 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 6.37 Total: 7.38 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -5.34 Total: -107.08 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.10 Total: -40.21 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Total: -71.08 3.19 -67.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571860342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.273 kcal (2) G-P(sol) polarization free energy of solvation -71.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds