Wall clock time and date at job start Tue Mar 31 2020 11:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47277 * 2 1 4 4 N 1.46501 * 109.47017 * 179.97438 * 3 2 1 5 5 C 1.46758 * 124.34957 * 269.95256 * 4 3 2 6 6 C 1.54487 * 105.47401 * 197.03933 * 5 4 3 7 7 H 1.08999 * 111.00025 * 92.71298 * 6 5 4 8 8 C 1.50695 * 110.96935 * 216.46544 * 6 5 4 9 9 O 1.21276 * 120.00318 * 353.83332 * 8 6 5 10 10 N 1.34779 * 120.00165 * 173.82895 * 8 6 5 11 11 C 1.39462 * 120.00261 * 183.95234 * 10 8 6 12 12 C 1.38594 * 119.58170 * 174.23754 * 11 10 8 13 13 C 1.40816 * 118.79996 * 180.02562 * 12 11 10 14 14 C 1.41540 * 121.00068 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99652 * 337.55354 * 14 13 12 16 16 C 1.40021 * 120.00323 * 157.55353 * 14 13 12 17 17 N 1.30748 * 120.00255 * 329.21071 * 16 14 13 18 18 Si 1.86804 * 120.00260 * 149.20736 * 16 14 13 19 19 H 1.48500 * 109.47283 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47093 * 300.00702 * 18 16 14 21 21 H 1.48507 * 109.46585 * 60.00251 * 18 16 14 22 22 C 1.41175 * 118.00438 * 0.27316 * 13 12 11 23 23 C 1.37595 * 119.01503 * 359.43272 * 22 13 12 24 24 N 1.32085 * 121.10554 * 0.58735 * 23 22 13 25 25 C 1.54632 * 101.75963 * 334.58242 * 6 5 4 26 26 C 1.34418 * 124.34799 * 89.97858 * 4 3 2 27 27 O 1.21279 * 124.94246 * 359.60015 * 26 4 3 28 28 H 1.08989 * 109.47128 * 300.00368 * 1 2 3 29 29 H 1.09004 * 109.46829 * 60.00442 * 1 2 3 30 30 H 1.09000 * 109.47492 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46868 * 239.99531 * 2 1 3 32 32 H 1.09000 * 109.46796 * 120.00075 * 2 1 3 33 33 H 1.09001 * 109.47077 * 60.00102 * 3 2 1 34 34 H 1.09000 * 109.47269 * 299.99785 * 3 2 1 35 35 H 1.09004 * 110.25012 * 78.03816 * 5 4 3 36 36 H 1.09004 * 110.25002 * 316.03586 * 5 4 3 37 37 H 0.97001 * 119.99599 * 3.95530 * 10 8 6 38 38 H 1.08001 * 120.60253 * 0.02562 * 12 11 10 39 39 H 0.97004 * 119.99553 * 354.02063 * 17 16 14 40 40 H 1.08002 * 120.49348 * 179.70697 * 22 13 12 41 41 H 1.07998 * 119.44928 * 180.26914 * 23 22 13 42 42 H 1.09004 * 110.47982 * 143.47680 * 25 6 5 43 43 H 1.08996 * 110.48724 * 265.98265 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3326 1.4435 1.2126 6 6 5.7407 1.8793 0.7499 7 1 5.8668 2.9578 0.8451 8 6 6.8111 1.1442 1.5145 9 8 6.5074 0.4193 2.4381 10 7 8.1062 1.2922 1.1719 11 6 9.0896 0.5495 1.8248 12 6 10.4027 0.6181 1.3866 13 6 11.3821 -0.1391 2.0576 14 6 12.7370 -0.1036 1.6497 15 1 12.9901 0.1918 0.6421 16 6 13.7493 -0.4513 2.5525 17 7 13.5899 -0.2289 3.8310 18 14 15.3277 -1.2331 1.9303 19 1 16.2315 -1.5040 3.0770 20 1 15.0094 -2.5085 1.2393 21 1 15.9966 -0.3087 0.9797 22 6 10.9713 -0.9389 3.1460 23 6 9.6449 -0.9376 3.5119 24 7 8.7568 -0.2126 2.8560 25 6 5.7301 1.4525 -0.7363 26 6 4.2639 1.4418 -1.1089 27 8 3.8356 1.4343 -2.2434 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 4.3703 0.4435 1.6447 36 1 3.9375 2.1542 1.9386 37 1 8.3543 1.9154 0.4711 38 1 10.6698 1.2409 0.5457 39 1 12.8101 0.2547 4.1456 40 1 11.6882 -1.5394 3.6862 41 1 9.3237 -1.5435 4.3462 42 1 6.2730 2.1759 -1.3447 43 1 6.1622 0.4584 -0.8509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571860343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:11 Heat of formation + Delta-G solvation = -46.153784 kcal Electronic energy + Delta-G solvation = -25632.572203 eV Core-core repulsion = 21870.110761 eV Total energy + Delta-G solvation = -3762.461442 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98053 -39.55839 -38.05633 -36.52532 -35.04918 -34.79245 -33.79975 -31.74740 -30.60968 -28.77737 -27.85303 -26.57995 -25.82302 -23.75489 -22.09413 -22.03086 -21.44517 -19.84552 -19.53503 -18.30146 -17.64204 -17.01114 -16.28699 -15.98654 -15.51118 -15.05034 -14.72283 -14.57304 -14.48833 -14.21442 -14.07618 -13.78757 -13.77331 -13.47267 -13.07067 -13.02105 -12.59306 -12.45675 -12.34449 -12.08243 -11.84237 -11.72302 -11.63688 -11.49993 -11.27097 -11.00755 -10.59160 -10.48598 -10.18369 -10.05936 -9.92124 -9.56761 -9.20195 -8.93474 -8.30548 -7.90460 -7.46930 -7.21062 -4.76090 2.28942 2.38240 2.68895 2.71820 3.04334 3.09419 3.25867 3.28910 3.34985 3.89064 4.04171 4.15007 4.48487 4.60269 4.61499 4.66434 4.73240 4.95373 5.01525 5.11513 5.24012 5.30458 5.33600 5.44020 5.46672 5.52865 5.70254 5.73816 5.79746 5.80810 5.94370 6.30212 6.36825 6.40525 6.57355 6.69671 6.86133 7.17702 7.20014 7.40990 7.52332 7.74135 7.92967 7.95211 8.09455 8.44542 8.55848 8.67547 9.49831 9.82409 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.002388 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.869691 B =11723.462906 C =12159.582879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.124 4.124 7 H 0.117 0.883 8 C 0.511 3.489 9 O -0.471 6.471 10 N -0.657 5.657 11 C 0.358 3.642 12 C -0.311 4.311 13 C 0.129 3.871 14 C -0.513 4.513 15 H 0.080 0.920 16 C 0.044 3.956 17 N -0.775 5.775 18 Si 1.064 2.936 19 H -0.272 1.272 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.282 4.282 23 C 0.126 3.874 24 N -0.564 5.564 25 C -0.147 4.147 26 C 0.522 3.478 27 O -0.532 6.532 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.408 0.592 38 H 0.102 0.898 39 H 0.301 0.699 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.360 4.811 -5.224 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.005 3.995 4 N -0.353 5.353 5 C -0.005 4.005 6 C -0.146 4.146 7 H 0.135 0.865 8 C 0.294 3.706 9 O -0.340 6.340 10 N -0.302 5.302 11 C 0.132 3.868 12 C -0.337 4.337 13 C 0.121 3.879 14 C -0.543 4.543 15 H 0.098 0.902 16 C -0.181 4.181 17 N -0.397 5.397 18 Si 0.887 3.113 19 H -0.197 1.197 20 H -0.198 1.198 21 H -0.199 1.199 22 C -0.305 4.305 23 C -0.025 4.025 24 N -0.285 5.285 25 C -0.187 4.187 26 C 0.309 3.691 27 O -0.409 6.409 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.243 0.757 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.437 3.624 -4.307 16.431 hybrid contribution -0.372 1.078 -1.042 1.545 sum -15.809 4.702 -5.349 17.339 Atomic orbital electron populations 1.21686 0.94950 1.02117 1.01884 1.21933 0.96282 0.97089 1.02970 1.21452 0.77613 0.97249 1.03149 1.48355 1.06341 1.73317 1.07323 1.21988 0.87774 1.04020 0.86688 1.22288 0.94763 1.02404 0.95153 0.86473 1.20075 0.83004 0.82849 0.84686 1.90816 1.80908 1.35461 1.26841 1.43412 1.05545 1.42564 1.38702 1.18022 0.85553 0.91846 0.91366 1.21083 0.91942 1.11461 1.09197 1.17578 0.93051 0.87582 0.89685 1.20550 0.91077 1.41637 1.01009 0.90157 1.27126 1.04273 0.93532 0.93166 1.70438 1.29319 1.24018 1.15893 0.83651 0.73658 0.77409 0.76588 1.19710 1.19751 1.19931 1.21990 0.96544 1.06931 1.05058 1.21815 0.89372 0.94932 0.96387 1.67259 1.37063 1.13800 1.10333 1.22373 0.95472 1.05707 0.95197 1.20764 0.88941 0.74990 0.84382 1.90722 1.78600 1.50550 1.21046 0.92525 0.92537 0.92339 0.91530 0.91430 0.90219 0.89993 0.88925 0.89641 0.75708 0.87998 0.88610 0.87042 0.85717 0.87076 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.14 -1.25 6.26 -26.73 -0.17 -1.42 16 3 C 0.13 1.11 5.93 -4.04 -0.02 1.09 16 4 N -0.62 -6.52 2.93 -172.41 -0.51 -7.02 16 5 C 0.12 1.20 6.66 -3.12 -0.02 1.18 16 6 C -0.12 -1.29 3.55 -90.14 -0.32 -1.60 16 7 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 8 C 0.51 7.96 7.03 -10.99 -0.08 7.88 16 9 O -0.47 -9.40 13.82 5.56 0.08 -9.32 16 10 N -0.66 -10.81 5.34 -11.49 -0.06 -10.87 16 11 C 0.36 7.88 7.41 -154.71 -1.15 6.73 16 12 C -0.31 -7.15 9.73 -38.48 -0.37 -7.52 16 13 C 0.13 3.27 5.33 -106.55 -0.57 2.70 16 14 C -0.51 -12.85 9.00 -37.66 -0.34 -13.19 16 15 H 0.08 1.94 8.01 -52.48 -0.42 1.52 16 16 C 0.04 1.06 4.86 -17.35 -0.08 0.97 16 17 N -0.78 -19.45 12.33 55.55 0.69 -18.77 16 18 Si 1.06 20.24 30.03 -169.99 -5.10 15.14 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 22 C -0.28 -6.99 8.20 -38.70 -0.32 -7.31 16 23 C 0.13 3.00 11.15 -17.68 -0.20 2.80 16 24 N -0.56 -13.60 7.85 -12.52 -0.10 -13.70 16 25 C -0.15 -1.52 6.37 -26.74 -0.17 -1.69 16 26 C 0.52 6.51 8.02 -10.86 -0.09 6.42 16 27 O -0.53 -8.47 17.60 5.56 0.10 -8.37 16 28 H 0.06 0.33 8.14 -51.94 -0.42 -0.09 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.76 7.93 -51.93 -0.41 0.34 16 35 H 0.09 1.12 7.06 -51.93 -0.37 0.76 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.41 5.09 8.70 -40.82 -0.35 4.74 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.30 7.79 7.06 -40.82 -0.29 7.50 16 40 H 0.11 2.80 6.64 -52.49 -0.35 2.45 16 41 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 42 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.11 1.25 7.89 -51.93 -0.41 0.84 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -32.25 363.32 -9.01 -41.25 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.05 Total: 9.79 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -3.53 Total: -3.60 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.02 Total: -50.37 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.17 Total: -17.69 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.10 Total: 15.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.25 -9.01 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571860343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.901 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds