Wall clock time and date at job start Tue Mar 31 2020 11:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47277 * 2 1 4 4 N 1.46501 * 109.47017 * 179.97438 * 3 2 1 5 5 C 1.46758 * 124.34957 * 269.95256 * 4 3 2 6 6 C 1.54487 * 105.47401 * 197.03933 * 5 4 3 7 7 H 1.08999 * 111.00025 * 92.71298 * 6 5 4 8 8 C 1.50695 * 110.96935 * 216.46544 * 6 5 4 9 9 O 1.21276 * 120.00318 * 353.83332 * 8 6 5 10 10 N 1.34779 * 120.00165 * 173.82895 * 8 6 5 11 11 C 1.39462 * 120.00261 * 183.95234 * 10 8 6 12 12 C 1.38594 * 119.58170 * 174.23754 * 11 10 8 13 13 C 1.40816 * 118.79996 * 180.02562 * 12 11 10 14 14 C 1.41540 * 121.00068 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99652 * 337.55354 * 14 13 12 16 16 C 1.40021 * 120.00323 * 157.55353 * 14 13 12 17 17 N 1.30748 * 120.00255 * 329.21071 * 16 14 13 18 18 Si 1.86804 * 120.00260 * 149.20736 * 16 14 13 19 19 H 1.48500 * 109.47283 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47093 * 300.00702 * 18 16 14 21 21 H 1.48507 * 109.46585 * 60.00251 * 18 16 14 22 22 C 1.41175 * 118.00438 * 0.27316 * 13 12 11 23 23 C 1.37595 * 119.01503 * 359.43272 * 22 13 12 24 24 N 1.32085 * 121.10554 * 0.58735 * 23 22 13 25 25 C 1.54632 * 101.75963 * 334.58242 * 6 5 4 26 26 C 1.34418 * 124.34799 * 89.97858 * 4 3 2 27 27 O 1.21279 * 124.94246 * 359.60015 * 26 4 3 28 28 H 1.08989 * 109.47128 * 300.00368 * 1 2 3 29 29 H 1.09004 * 109.46829 * 60.00442 * 1 2 3 30 30 H 1.09000 * 109.47492 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46868 * 239.99531 * 2 1 3 32 32 H 1.09000 * 109.46796 * 120.00075 * 2 1 3 33 33 H 1.09001 * 109.47077 * 60.00102 * 3 2 1 34 34 H 1.09000 * 109.47269 * 299.99785 * 3 2 1 35 35 H 1.09004 * 110.25012 * 78.03816 * 5 4 3 36 36 H 1.09004 * 110.25002 * 316.03586 * 5 4 3 37 37 H 0.97001 * 119.99599 * 3.95530 * 10 8 6 38 38 H 1.08001 * 120.60253 * 0.02562 * 12 11 10 39 39 H 0.97004 * 119.99553 * 354.02063 * 17 16 14 40 40 H 1.08002 * 120.49348 * 179.70697 * 22 13 12 41 41 H 1.07998 * 119.44928 * 180.26914 * 23 22 13 42 42 H 1.09004 * 110.47982 * 143.47680 * 25 6 5 43 43 H 1.08996 * 110.48724 * 265.98265 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3326 1.4435 1.2126 6 6 5.7407 1.8793 0.7499 7 1 5.8668 2.9578 0.8451 8 6 6.8111 1.1442 1.5145 9 8 6.5074 0.4193 2.4381 10 7 8.1062 1.2922 1.1719 11 6 9.0896 0.5495 1.8248 12 6 10.4027 0.6181 1.3866 13 6 11.3821 -0.1391 2.0576 14 6 12.7370 -0.1036 1.6497 15 1 12.9901 0.1918 0.6421 16 6 13.7493 -0.4513 2.5525 17 7 13.5899 -0.2289 3.8310 18 14 15.3277 -1.2331 1.9303 19 1 16.2315 -1.5040 3.0770 20 1 15.0094 -2.5085 1.2393 21 1 15.9966 -0.3087 0.9797 22 6 10.9713 -0.9389 3.1460 23 6 9.6449 -0.9376 3.5119 24 7 8.7568 -0.2126 2.8560 25 6 5.7301 1.4525 -0.7363 26 6 4.2639 1.4418 -1.1089 27 8 3.8356 1.4343 -2.2434 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 4.3703 0.4435 1.6447 36 1 3.9375 2.1542 1.9386 37 1 8.3543 1.9154 0.4711 38 1 10.6698 1.2409 0.5457 39 1 12.8101 0.2547 4.1456 40 1 11.6882 -1.5394 3.6862 41 1 9.3237 -1.5435 4.3462 42 1 6.2730 2.1759 -1.3447 43 1 6.1622 0.4584 -0.8509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571860343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:10 Heat of formation + Delta-G solvation = -65.660992 kcal Electronic energy + Delta-G solvation = -25633.418099 eV Core-core repulsion = 21870.110761 eV Total energy + Delta-G solvation = -3763.307338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03323 -40.96236 -39.64770 -37.54496 -36.54605 -35.81387 -35.40136 -32.61968 -32.46548 -30.41353 -28.77840 -27.74700 -27.29707 -24.91578 -23.86158 -22.97668 -22.74845 -21.19242 -20.48283 -20.00742 -18.81260 -18.00930 -17.68086 -17.17598 -16.57515 -16.35879 -16.22954 -16.12655 -15.77827 -15.59693 -15.19107 -14.89227 -14.78766 -14.68509 -14.57051 -14.23302 -13.97721 -13.78412 -13.60495 -13.09847 -12.87273 -12.79319 -12.58469 -12.50644 -12.34606 -12.23885 -11.98741 -11.80959 -11.69873 -11.52325 -11.23587 -10.99120 -10.86240 -10.19848 -9.82226 -9.70475 -9.33089 -8.95732 -6.68488 0.59753 0.91059 1.41984 1.52898 1.61080 1.77450 1.78843 1.83911 2.11557 2.30788 2.68918 3.09182 3.26071 3.54584 3.62742 3.80252 3.96298 3.99006 4.02320 4.20019 4.30373 4.46003 4.50064 4.58143 4.60480 4.63706 4.72333 4.74693 4.77569 4.82954 4.87230 4.92085 5.11909 5.13797 5.29309 5.32562 5.43054 5.51518 5.52985 5.70513 5.98512 6.06014 6.12706 6.48696 6.58850 6.78398 7.01810 7.20047 7.72993 7.90580 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.002388 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.869691 B =11723.462906 C =12159.582879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.614 5.614 5 C 0.119 3.881 6 C -0.104 4.104 7 H 0.158 0.842 8 C 0.512 3.488 9 O -0.515 6.515 10 N -0.646 5.646 11 C 0.360 3.640 12 C -0.321 4.321 13 C 0.103 3.897 14 C -0.538 4.538 15 H 0.084 0.916 16 C 0.011 3.989 17 N -0.792 5.792 18 Si 1.116 2.884 19 H -0.272 1.272 20 H -0.265 1.265 21 H -0.253 1.253 22 C -0.299 4.299 23 C 0.123 3.877 24 N -0.582 5.582 25 C -0.141 4.141 26 C 0.515 3.485 27 O -0.573 6.573 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.428 0.572 38 H 0.122 0.878 39 H 0.285 0.715 40 H 0.099 0.901 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.997 6.170 -5.941 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.346 5.346 5 C -0.004 4.004 6 C -0.125 4.125 7 H 0.176 0.824 8 C 0.298 3.702 9 O -0.387 6.387 10 N -0.294 5.294 11 C 0.133 3.867 12 C -0.347 4.347 13 C 0.095 3.905 14 C -0.567 4.567 15 H 0.102 0.898 16 C -0.209 4.209 17 N -0.413 5.413 18 Si 0.932 3.068 19 H -0.196 1.196 20 H -0.190 1.190 21 H -0.177 1.177 22 C -0.323 4.323 23 C -0.029 4.029 24 N -0.303 5.303 25 C -0.181 4.181 26 C 0.304 3.696 27 O -0.453 6.453 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.267 0.733 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.114 5.029 -5.038 17.616 hybrid contribution -0.324 0.663 -0.802 1.090 sum -16.438 5.692 -5.840 18.350 Atomic orbital electron populations 1.21661 0.93293 1.02501 1.02753 1.21890 0.97740 0.96899 1.01470 1.21648 0.76619 0.97328 1.04311 1.48468 1.07128 1.72069 1.06937 1.22017 0.87797 1.03715 0.86826 1.22221 0.92576 1.03716 0.94005 0.82419 1.20906 0.83176 0.82004 0.84125 1.90807 1.81500 1.37351 1.29048 1.43406 1.05144 1.42170 1.38642 1.18289 0.86631 0.91214 0.90613 1.21292 0.92158 1.11537 1.09697 1.17968 0.94069 0.88146 0.90284 1.20790 0.91543 1.42940 1.01436 0.89817 1.28525 1.06951 0.92813 0.92616 1.70551 1.28890 1.25167 1.16742 0.83025 0.70094 0.77200 0.76477 1.19640 1.18980 1.17663 1.21942 0.96842 1.07775 1.05721 1.22127 0.89078 0.94939 0.96786 1.67398 1.37181 1.14467 1.11237 1.22379 0.94378 1.06020 0.95362 1.21087 0.89912 0.74462 0.84144 1.90703 1.79364 1.52611 1.22601 0.90981 0.92303 0.92259 0.94061 0.91856 0.87361 0.90447 0.91046 0.86848 0.73297 0.86026 0.90284 0.88250 0.83936 0.84310 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.14 -2.35 6.26 30.59 0.19 -2.16 16 3 C 0.12 1.90 5.93 86.38 0.51 2.42 16 4 N -0.61 -11.70 2.93 -817.99 -2.40 -14.09 16 5 C 0.12 2.12 6.66 86.84 0.58 2.70 16 6 C -0.10 -1.81 3.55 -10.48 -0.04 -1.85 16 7 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 8 C 0.51 14.94 7.03 87.66 0.62 15.55 16 9 O -0.52 -20.11 13.82 -3.02 -0.04 -20.15 16 10 N -0.65 -19.99 5.34 -308.67 -1.65 -21.63 16 11 C 0.36 15.57 7.41 132.75 0.98 16.55 16 12 C -0.32 -14.66 9.73 22.99 0.22 -14.43 16 13 C 0.10 5.30 5.33 -21.11 -0.11 5.19 16 14 C -0.54 -27.15 9.00 23.52 0.21 -26.94 16 15 H 0.08 4.04 8.01 -2.91 -0.02 4.02 16 16 C 0.01 0.53 4.86 85.29 0.41 0.94 16 17 N -0.79 -40.54 12.33 21.84 0.27 -40.27 16 18 Si 1.12 40.13 30.03 68.60 2.06 42.19 16 19 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 20 H -0.27 -9.17 7.11 99.48 0.71 -8.47 16 21 H -0.25 -8.19 7.11 99.48 0.71 -7.48 16 22 C -0.30 -15.24 8.20 22.84 0.19 -15.05 16 23 C 0.12 5.91 11.15 84.50 0.94 6.85 16 24 N -0.58 -28.05 7.85 -193.54 -1.52 -29.57 16 25 C -0.14 -2.55 6.37 30.59 0.19 -2.36 16 26 C 0.52 12.06 8.02 87.90 0.71 12.76 16 27 O -0.57 -17.88 17.60 -3.03 -0.05 -17.93 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.32 7.93 -2.39 -0.02 1.30 16 35 H 0.07 1.64 7.06 -2.39 -0.02 1.62 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.43 9.43 8.70 -92.71 -0.81 8.62 16 38 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 39 H 0.29 15.31 7.06 -92.71 -0.65 14.65 16 40 H 0.10 5.20 6.64 -2.91 -0.02 5.18 16 41 H 0.14 6.13 8.06 -2.91 -0.02 6.10 16 42 H 0.14 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.10 2.09 7.89 -2.39 -0.02 2.08 16 Total: -1.00 -72.31 363.32 3.34 -68.98 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.34 Total: 33.34 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 6.33 Total: -0.86 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -5.30 Total: -105.57 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.09 Total: -38.08 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.06 Total: 42.19 kcal Total: -72.31 3.34 -68.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571860343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.317 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds