Wall clock time and date at job start Tue Mar 31 2020 12:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.70030 * 2 1 4 4 C 1.53623 * 109.66474 * 120.59994 * 2 1 3 5 5 C 1.53042 * 109.24083 * 174.54849 * 4 2 1 6 6 H 1.09006 * 109.45634 * 58.52893 * 5 4 2 7 7 C 1.52991 * 109.45843 * 178.48928 * 5 4 2 8 8 O 1.42908 * 109.46943 * 185.06750 * 7 5 4 9 9 C 1.53043 * 109.53503 * 298.50962 * 5 4 2 10 10 C 1.53196 * 109.31437 * 61.36797 * 9 5 4 11 11 N 1.46930 * 109.58005 * 239.65290 * 2 1 3 12 12 S 1.65592 * 120.63527 * 6.62204 * 11 2 1 13 13 O 1.42104 * 104.27536 * 162.77465 * 12 11 2 14 14 O 1.42105 * 104.27709 * 34.92053 * 12 11 2 15 15 C 1.81400 * 104.45278 * 278.84713 * 12 11 2 16 16 C 1.53001 * 109.47119 * 172.75018 * 15 12 11 17 17 C 1.50698 * 115.54900 * 61.22291 * 16 15 12 18 18 H 1.07998 * 120.00087 * 264.62013 * 17 16 15 19 19 C 1.37884 * 119.99904 * 84.61953 * 17 16 15 20 20 N 1.31507 * 120.00222 * 0.08427 * 19 17 16 21 21 Si 1.86799 * 119.99544 * 180.08530 * 19 17 16 22 22 H 1.48499 * 109.47539 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47094 * 120.00083 * 21 19 17 24 24 H 1.48507 * 109.46921 * 239.99459 * 21 19 17 25 25 C 1.52995 * 117.49842 * 275.55169 * 16 15 12 26 26 C 1.52996 * 117.49638 * 206.89028 * 16 15 12 27 27 H 1.08993 * 109.47322 * 168.18267 * 1 2 3 28 28 H 1.09007 * 109.46625 * 288.18036 * 1 2 3 29 29 H 1.08997 * 109.46988 * 48.17725 * 1 2 3 30 30 H 1.08999 * 109.63495 * 54.55714 * 4 2 1 31 31 H 1.08999 * 109.45539 * 294.43072 * 4 2 1 32 32 H 1.09000 * 109.47402 * 305.06143 * 7 5 4 33 33 H 1.08994 * 109.47545 * 65.07032 * 7 5 4 34 34 H 0.96702 * 113.99475 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.49557 * 301.41082 * 9 5 4 36 36 H 1.09005 * 109.52104 * 181.33315 * 9 5 4 37 37 H 1.08998 * 109.58516 * 185.57323 * 10 9 5 38 38 H 1.08996 * 109.70632 * 65.21992 * 10 9 5 39 39 H 1.09003 * 109.46872 * 52.74857 * 15 12 11 40 40 H 1.09004 * 109.46961 * 292.75432 * 15 12 11 41 41 H 0.96994 * 120.00064 * 185.02985 * 20 19 17 42 42 H 1.08994 * 117.50142 * 359.97438 * 25 16 15 43 43 H 1.08995 * 117.49889 * 145.02426 * 25 16 15 44 44 H 1.08999 * 117.49916 * 214.97895 * 26 16 15 45 45 H 1.08998 * 117.49959 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7364 1.2452 5 6 3.5713 -0.8499 1.1675 6 1 4.0066 0.1471 1.0989 7 6 4.0949 -1.5493 2.4233 8 8 5.5239 -1.5505 2.4071 9 6 3.9615 -1.6628 -0.0691 10 6 3.4656 -0.9419 -1.3266 11 7 2.0225 -0.6994 -1.1947 12 16 0.9718 -1.1989 -2.3731 13 8 1.8004 -1.4398 -3.5021 14 8 -0.0290 -0.1905 -2.4006 15 6 0.2892 -2.7561 -1.7406 16 6 -0.8362 -3.2311 -2.6620 17 6 -0.4330 -3.5193 -4.0851 18 1 -0.5549 -2.7616 -4.8449 19 6 0.0916 -4.7505 -4.4171 20 7 0.2386 -5.6737 -3.4922 21 14 0.5936 -5.1069 -6.1807 22 1 0.3282 -3.9123 -7.0221 23 1 2.0415 -5.4336 -6.2269 24 1 -0.1903 -6.2584 -6.6954 25 6 -2.2331 -2.6533 -2.4267 26 6 -1.9310 -4.1051 -2.0470 27 1 -0.3633 -1.0058 -0.2104 28 1 -0.3633 0.3207 0.9765 29 1 -0.3633 0.6853 -0.7658 30 1 1.6097 -1.7338 1.2887 31 1 1.7689 -0.1778 2.1389 32 1 3.7422 -1.0195 3.3082 33 1 3.7311 -2.5765 2.4457 34 1 5.9256 -1.9786 3.1755 35 1 3.5061 -2.6515 -0.0131 36 1 5.0460 -1.7636 -0.1114 37 1 3.6532 -1.5635 -2.2021 38 1 3.9874 0.0089 -1.4351 39 1 -0.1051 -2.5987 -0.7367 40 1 1.0752 -3.5106 -1.7081 41 1 0.6743 -6.5127 -3.7094 42 1 -2.3506 -1.9351 -1.6153 43 1 -2.8607 -2.4820 -3.3012 44 1 -2.3601 -4.8883 -2.6720 45 1 -1.8494 -4.3420 -0.9862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577768871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:31 Heat of formation + Delta-G solvation = -98.540059 kcal Electronic energy + Delta-G solvation = -26904.755262 eV Core-core repulsion = 23243.173381 eV Total energy + Delta-G solvation = -3661.581881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.14491 -36.91699 -36.73856 -36.36387 -35.04278 -33.01600 -32.17067 -32.02733 -28.25178 -27.44020 -26.15940 -25.43028 -22.97279 -21.63801 -21.18698 -20.25566 -19.30799 -18.28028 -17.47250 -16.79900 -16.37910 -16.06784 -15.29669 -14.98800 -14.67569 -14.58591 -14.26610 -14.16600 -13.98763 -13.76645 -13.19571 -13.05503 -12.58909 -12.52423 -12.32201 -11.87897 -11.82754 -11.59667 -11.28832 -11.21511 -11.08013 -10.98737 -10.94085 -10.84358 -10.66527 -10.58566 -10.47923 -10.43516 -10.08629 -10.07546 -9.95022 -9.61115 -9.01262 -8.73669 -8.53806 -8.04397 -6.13344 -4.25305 1.09236 3.30070 3.34969 3.38027 3.45928 3.98907 4.39133 4.58213 4.62991 4.69360 4.84621 4.96558 5.09219 5.10804 5.15440 5.20144 5.24752 5.34879 5.36964 5.46997 5.53117 5.63481 5.74904 5.77253 5.80493 5.93526 5.95852 5.98505 6.13830 6.18784 6.27116 6.35836 6.38521 6.43262 6.62775 6.68439 6.74259 6.95853 7.02347 7.24703 7.42230 7.43582 7.80210 8.20479 8.81210 9.47289 10.94352 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.004974 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.578258 B = 5627.916462 C = 6152.140690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.160 3.840 3 H 0.075 0.925 4 C -0.127 4.127 5 C -0.084 4.084 6 H 0.078 0.922 7 C 0.080 3.920 8 O -0.573 6.573 9 C -0.127 4.127 10 C 0.119 3.881 11 N -1.008 6.008 12 S 2.610 3.390 13 O -0.952 6.952 14 O -0.968 6.968 15 C -0.556 4.556 16 C 0.042 3.958 17 C -0.516 4.516 18 H 0.068 0.932 19 C 0.082 3.918 20 N -0.875 5.875 21 Si 0.891 3.109 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.283 1.283 25 C -0.206 4.206 26 C -0.138 4.138 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.377 0.623 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.262 0.738 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 7.655 13.823 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.054 3.946 3 H 0.093 0.907 4 C -0.166 4.166 5 C -0.103 4.103 6 H 0.096 0.904 7 C 0.002 3.998 8 O -0.378 6.378 9 C -0.166 4.166 10 C -0.006 4.006 11 N -0.845 5.845 12 S 2.710 3.290 13 O -0.942 6.942 14 O -0.958 6.958 15 C -0.689 4.689 16 C 0.040 3.960 17 C -0.553 4.553 18 H 0.086 0.914 19 C -0.123 4.123 20 N -0.510 5.510 21 Si 0.718 3.282 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.209 1.209 25 C -0.244 4.244 26 C -0.177 4.177 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.146 0.854 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.664 8.252 12.437 15.965 hybrid contribution 0.456 -1.295 0.420 1.436 sum 6.120 6.958 12.858 15.849 Atomic orbital electron populations 1.22905 0.93457 1.04861 1.04736 1.20889 0.94182 0.95573 0.83948 0.90742 1.22100 0.94583 1.01841 0.98056 1.21079 0.95163 1.00082 0.93947 0.90409 1.22263 0.80688 0.99361 0.97504 1.86487 1.19859 1.82623 1.48807 1.21933 1.01653 0.99137 0.93872 1.21379 0.79934 1.00612 0.98705 1.58263 1.17431 1.72280 1.36527 1.05102 0.73655 0.76944 0.73338 1.93504 1.66745 1.86719 1.47273 1.93472 1.60372 1.55816 1.86161 1.30156 1.11310 1.19817 1.07610 1.18275 0.83622 1.00173 0.93980 1.20586 1.44077 0.99391 0.91251 0.91422 1.24947 0.94306 0.95407 0.97612 1.69999 1.41076 1.06564 1.33407 0.86530 0.78487 0.78431 0.84763 1.19135 1.20497 1.20901 1.23162 1.02181 0.96831 1.02182 1.22517 1.04548 0.92312 0.98310 0.92219 0.91169 0.86852 0.91023 0.90958 0.93840 0.93516 0.77707 0.91426 0.90249 0.88481 0.91688 0.88252 0.85359 0.92819 0.90892 0.89622 0.89445 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.74 7.71 37.16 0.29 -2.45 16 2 C 0.16 2.09 3.48 -67.37 -0.23 1.85 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.34 4.65 -26.39 -0.12 -1.47 16 5 C -0.08 -0.90 2.39 -90.58 -0.22 -1.12 16 6 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 7 C 0.08 0.73 6.43 37.15 0.24 0.97 16 8 O -0.57 -5.48 13.17 -35.23 -0.46 -5.94 16 9 C -0.13 -1.58 5.27 -26.61 -0.14 -1.72 16 10 C 0.12 1.73 6.37 -3.71 -0.02 1.70 16 11 N -1.01 -16.06 3.21 -106.23 -0.34 -16.40 16 12 S 2.61 53.90 4.45 -107.50 -0.48 53.42 16 13 O -0.95 -23.14 16.03 -57.54 -0.92 -24.07 16 14 O -0.97 -20.79 13.99 -57.54 -0.80 -21.59 16 15 C -0.56 -11.73 5.69 37.16 0.21 -11.52 16 16 C 0.04 1.02 1.42 -155.67 -0.22 0.80 16 17 C -0.52 -14.23 7.99 -34.44 -0.28 -14.51 16 18 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 19 C 0.08 2.26 5.42 -17.82 -0.10 2.17 16 20 N -0.87 -24.25 12.77 55.43 0.71 -23.54 16 21 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.21 -4.50 9.95 -26.69 -0.27 -4.76 16 26 C -0.14 -3.15 9.30 -26.69 -0.25 -3.39 16 27 H 0.06 0.87 4.66 -51.93 -0.24 0.63 16 28 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 29 H 0.11 1.77 5.96 -51.93 -0.31 1.46 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 1.90 9.12 45.56 0.42 2.32 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 37 H 0.10 1.55 6.84 -51.93 -0.36 1.20 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.77 6.02 -51.92 -0.31 1.46 16 40 H 0.13 2.84 8.14 -51.92 -0.42 2.41 16 41 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -32.85 361.02 -9.66 -42.51 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.67 Total: 6.90 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: -1.11 Total: -33.45 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.37 Total: -39.94 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -2.19 Total: -51.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.48 Total: 53.42 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.85 -9.66 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577768871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.027 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds