Wall clock time and date at job start Tue Mar 31 2020 12:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.70030 * 2 1 4 4 C 1.53623 * 109.66474 * 120.59994 * 2 1 3 5 5 C 1.53042 * 109.24083 * 174.54849 * 4 2 1 6 6 H 1.09006 * 109.45634 * 58.52893 * 5 4 2 7 7 C 1.52991 * 109.45843 * 178.48928 * 5 4 2 8 8 O 1.42908 * 109.46943 * 185.06750 * 7 5 4 9 9 C 1.53043 * 109.53503 * 298.50962 * 5 4 2 10 10 C 1.53196 * 109.31437 * 61.36797 * 9 5 4 11 11 N 1.46930 * 109.58005 * 239.65290 * 2 1 3 12 12 S 1.65592 * 120.63527 * 6.62204 * 11 2 1 13 13 O 1.42104 * 104.27536 * 162.77465 * 12 11 2 14 14 O 1.42105 * 104.27709 * 34.92053 * 12 11 2 15 15 C 1.81400 * 104.45278 * 278.84713 * 12 11 2 16 16 C 1.53001 * 109.47119 * 172.75018 * 15 12 11 17 17 C 1.50698 * 115.54900 * 61.22291 * 16 15 12 18 18 H 1.07998 * 120.00087 * 264.62013 * 17 16 15 19 19 C 1.37884 * 119.99904 * 84.61953 * 17 16 15 20 20 N 1.31507 * 120.00222 * 0.08427 * 19 17 16 21 21 Si 1.86799 * 119.99544 * 180.08530 * 19 17 16 22 22 H 1.48499 * 109.47539 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47094 * 120.00083 * 21 19 17 24 24 H 1.48507 * 109.46921 * 239.99459 * 21 19 17 25 25 C 1.52995 * 117.49842 * 275.55169 * 16 15 12 26 26 C 1.52996 * 117.49638 * 206.89028 * 16 15 12 27 27 H 1.08993 * 109.47322 * 168.18267 * 1 2 3 28 28 H 1.09007 * 109.46625 * 288.18036 * 1 2 3 29 29 H 1.08997 * 109.46988 * 48.17725 * 1 2 3 30 30 H 1.08999 * 109.63495 * 54.55714 * 4 2 1 31 31 H 1.08999 * 109.45539 * 294.43072 * 4 2 1 32 32 H 1.09000 * 109.47402 * 305.06143 * 7 5 4 33 33 H 1.08994 * 109.47545 * 65.07032 * 7 5 4 34 34 H 0.96702 * 113.99475 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.49557 * 301.41082 * 9 5 4 36 36 H 1.09005 * 109.52104 * 181.33315 * 9 5 4 37 37 H 1.08998 * 109.58516 * 185.57323 * 10 9 5 38 38 H 1.08996 * 109.70632 * 65.21992 * 10 9 5 39 39 H 1.09003 * 109.46872 * 52.74857 * 15 12 11 40 40 H 1.09004 * 109.46961 * 292.75432 * 15 12 11 41 41 H 0.96994 * 120.00064 * 185.02985 * 20 19 17 42 42 H 1.08994 * 117.50142 * 359.97438 * 25 16 15 43 43 H 1.08995 * 117.49889 * 145.02426 * 25 16 15 44 44 H 1.08999 * 117.49916 * 214.97895 * 26 16 15 45 45 H 1.08998 * 117.49959 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7364 1.2452 5 6 3.5713 -0.8499 1.1675 6 1 4.0066 0.1471 1.0989 7 6 4.0949 -1.5493 2.4233 8 8 5.5239 -1.5505 2.4071 9 6 3.9615 -1.6628 -0.0691 10 6 3.4656 -0.9419 -1.3266 11 7 2.0225 -0.6994 -1.1947 12 16 0.9718 -1.1989 -2.3731 13 8 1.8004 -1.4398 -3.5021 14 8 -0.0290 -0.1905 -2.4006 15 6 0.2892 -2.7561 -1.7406 16 6 -0.8362 -3.2311 -2.6620 17 6 -0.4330 -3.5193 -4.0851 18 1 -0.5549 -2.7616 -4.8449 19 6 0.0916 -4.7505 -4.4171 20 7 0.2386 -5.6737 -3.4922 21 14 0.5936 -5.1069 -6.1807 22 1 0.3282 -3.9123 -7.0221 23 1 2.0415 -5.4336 -6.2269 24 1 -0.1903 -6.2584 -6.6954 25 6 -2.2331 -2.6533 -2.4267 26 6 -1.9310 -4.1051 -2.0470 27 1 -0.3633 -1.0058 -0.2104 28 1 -0.3633 0.3207 0.9765 29 1 -0.3633 0.6853 -0.7658 30 1 1.6097 -1.7338 1.2887 31 1 1.7689 -0.1778 2.1389 32 1 3.7422 -1.0195 3.3082 33 1 3.7311 -2.5765 2.4457 34 1 5.9256 -1.9786 3.1755 35 1 3.5061 -2.6515 -0.0131 36 1 5.0460 -1.7636 -0.1114 37 1 3.6532 -1.5635 -2.2021 38 1 3.9874 0.0089 -1.4351 39 1 -0.1051 -2.5987 -0.7367 40 1 1.0752 -3.5106 -1.7081 41 1 0.6743 -6.5127 -3.7094 42 1 -2.3506 -1.9351 -1.6153 43 1 -2.8607 -2.4820 -3.3012 44 1 -2.3601 -4.8883 -2.6720 45 1 -1.8494 -4.3420 -0.9862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577768871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:30 Heat of formation + Delta-G solvation = -122.422184 kcal Electronic energy + Delta-G solvation = -26905.790869 eV Core-core repulsion = 23243.173381 eV Total energy + Delta-G solvation = -3662.617488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.11944 -38.61657 -38.16415 -37.50934 -36.74345 -34.11751 -33.97406 -33.24760 -29.93619 -28.49354 -27.59546 -26.90966 -24.00033 -22.97955 -22.74949 -21.38690 -20.93526 -19.72451 -18.46666 -18.23875 -17.97079 -17.42325 -16.88851 -16.59665 -15.95156 -15.72060 -15.55623 -15.52011 -15.22582 -15.02896 -14.89346 -14.04385 -13.98045 -13.75494 -13.54168 -13.43747 -13.33128 -13.03923 -12.91273 -12.86671 -12.70265 -12.62292 -12.42970 -12.21694 -12.11442 -11.90507 -11.81902 -11.65625 -11.54200 -11.45158 -11.08208 -10.96420 -10.76128 -10.52621 -10.10321 -9.71531 -8.22564 -6.38207 -0.50422 1.33413 1.37164 1.48396 1.93854 2.37278 3.00945 3.04905 3.32112 3.34883 3.46059 3.56929 3.80359 3.94240 4.07685 4.09477 4.22523 4.28942 4.33463 4.36961 4.49252 4.56293 4.59645 4.65915 4.71826 4.80316 4.83189 4.85569 4.88770 4.92022 4.97981 5.04066 5.20298 5.20660 5.23737 5.29748 5.43661 5.50998 5.59462 5.61570 5.68553 5.81944 6.20006 6.69109 6.98132 7.35286 8.84748 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.004974 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.578258 B = 5627.916462 C = 6152.140690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.151 3.849 3 H 0.091 0.909 4 C -0.121 4.121 5 C -0.083 4.083 6 H 0.080 0.920 7 C 0.082 3.918 8 O -0.593 6.593 9 C -0.122 4.122 10 C 0.113 3.887 11 N -1.002 6.002 12 S 2.619 3.381 13 O -0.999 6.999 14 O -0.980 6.980 15 C -0.550 4.550 16 C 0.008 3.992 17 C -0.534 4.534 18 H 0.046 0.954 19 C 0.043 3.957 20 N -0.892 5.892 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.269 1.269 25 C -0.191 4.191 26 C -0.135 4.135 27 H 0.046 0.954 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.395 0.605 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.265 0.735 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 8.506 16.514 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.047 3.953 3 H 0.109 0.891 4 C -0.160 4.160 5 C -0.102 4.102 6 H 0.099 0.901 7 C 0.004 3.996 8 O -0.401 6.401 9 C -0.161 4.161 10 C -0.012 4.012 11 N -0.841 5.841 12 S 2.719 3.281 13 O -0.990 6.990 14 O -0.971 6.971 15 C -0.683 4.683 16 C 0.006 3.994 17 C -0.571 4.571 18 H 0.064 0.936 19 C -0.160 4.160 20 N -0.529 5.529 21 Si 0.757 3.243 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.228 4.228 26 C -0.174 4.174 27 H 0.065 0.935 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.245 0.755 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.151 0.849 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.924 9.089 15.134 18.622 hybrid contribution 0.393 -1.489 -0.377 1.586 sum 6.317 7.600 14.758 17.761 Atomic orbital electron populations 1.22897 0.93752 1.03483 1.06119 1.21250 0.94088 0.96487 0.83522 0.89114 1.22084 0.94230 1.01872 0.97811 1.21079 0.95448 0.99982 0.93695 0.90122 1.22222 0.80609 0.99468 0.97280 1.86433 1.20186 1.83091 1.50396 1.21886 1.01630 0.98723 0.93874 1.21532 0.79214 1.01397 0.99085 1.57929 1.17236 1.72080 1.36835 1.04537 0.73537 0.76640 0.73409 1.93438 1.67931 1.87272 1.50338 1.93472 1.61133 1.55779 1.86689 1.30034 1.09906 1.19572 1.08739 1.18397 0.85439 1.02313 0.93274 1.20755 1.44417 0.99064 0.92881 0.93622 1.25500 0.94574 0.95466 1.00431 1.70036 1.41629 1.06776 1.34425 0.85906 0.78532 0.78337 0.81559 1.19830 1.20064 1.19408 1.23209 1.00081 0.96767 1.02732 1.22453 1.03699 0.92219 0.98996 0.93470 0.87427 0.89190 0.91291 0.87600 0.91588 0.93510 0.75542 0.92418 0.89928 0.90887 0.89994 0.84881 0.86962 0.92564 0.88023 0.90164 0.91693 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.98 7.71 71.98 0.56 -4.43 16 2 C 0.15 3.52 3.48 45.12 0.16 3.68 16 3 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.12 -2.10 4.65 30.82 0.14 -1.96 16 5 C -0.08 -1.53 2.39 -10.77 -0.03 -1.56 16 6 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 7 C 0.08 1.21 6.43 71.98 0.46 1.68 16 8 O -0.59 -9.68 13.17 -148.98 -1.96 -11.65 16 9 C -0.12 -2.88 5.27 30.67 0.16 -2.72 16 10 C 0.11 3.22 6.37 86.36 0.55 3.77 16 11 N -1.00 -30.99 3.21 -490.00 -1.57 -32.56 16 12 S 2.62 109.13 4.45 -56.49 -0.25 108.88 16 13 O -1.00 -50.49 16.03 -127.65 -2.05 -52.53 16 14 O -0.98 -42.08 13.99 -127.65 -1.79 -43.87 16 15 C -0.55 -23.10 5.69 71.98 0.41 -22.69 16 16 C 0.01 0.38 1.42 -52.93 -0.08 0.31 16 17 C -0.53 -30.24 7.99 25.60 0.20 -30.04 16 18 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 19 C 0.04 2.42 5.42 84.66 0.46 2.88 16 20 N -0.89 -50.10 12.77 21.45 0.27 -49.82 16 21 Si 0.93 45.21 29.54 68.60 2.03 47.23 16 22 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 25 C -0.19 -8.16 9.95 30.62 0.30 -7.85 16 26 C -0.13 -6.08 9.30 30.62 0.28 -5.79 16 27 H 0.05 1.25 4.66 -2.39 -0.01 1.24 16 28 H 0.11 1.78 8.11 -2.38 -0.02 1.76 16 29 H 0.09 2.66 5.96 -2.39 -0.01 2.65 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.40 2.91 9.12 -74.06 -0.68 2.24 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.89 7.79 -2.38 -0.02 1.87 16 37 H 0.07 2.43 6.84 -2.39 -0.02 2.41 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.13 4.51 6.02 -2.39 -0.01 4.50 16 40 H 0.11 5.05 8.14 -2.39 -0.02 5.03 16 41 H 0.27 14.10 8.32 -92.71 -0.77 13.33 16 42 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 43 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 44 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -72.31 361.02 -1.42 -73.73 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.30 Total: 25.30 kcal Atomic # 6 Polarization: -68.31 SS G_CDS: 3.59 Total: -64.72 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.30 Total: -82.38 kcal Atomic # 8 Polarization: -102.25 SS G_CDS: -5.79 Total: -108.05 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 109.13 SS G_CDS: -0.25 Total: 108.88 kcal Total: -72.31 -1.42 -73.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577768871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.692 kcal (2) G-P(sol) polarization free energy of solvation -72.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds