Wall clock time and date at job start Tue Mar 31 2020 12:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46676 * 2 1 4 4 O 1.21283 * 120.00242 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99790 * 180.02562 * 3 2 1 6 6 C 1.47554 * 126.85571 * 179.97438 * 5 3 2 7 7 C 1.54337 * 104.00947 * 151.58800 * 6 5 3 8 8 N 1.47235 * 104.91537 * 28.35478 * 7 6 5 9 9 C 1.34772 * 126.21874 * 162.72262 * 8 7 6 10 10 O 1.21591 * 120.00261 * 179.68863 * 9 8 7 11 11 N 1.34782 * 119.99904 * 359.69336 * 9 8 7 12 12 C 1.39957 * 119.99649 * 174.28927 * 11 9 8 13 13 C 1.39291 * 119.94346 * 145.41655 * 12 11 9 14 14 C 1.38493 * 120.42674 * 179.97438 * 13 12 11 15 15 C 1.37680 * 120.31909 * 0.25494 * 14 13 12 16 16 C 1.40738 * 119.88784 * 359.50047 * 15 14 13 17 17 C 1.41401 * 120.21495 * 180.24918 * 16 15 14 18 18 H 1.07999 * 120.00631 * 214.44838 * 17 16 15 19 19 C 1.39938 * 119.99818 * 34.44762 * 17 16 15 20 20 N 1.30832 * 120.00192 * 5.53559 * 19 17 16 21 21 Si 1.86799 * 119.99929 * 185.53936 * 19 17 16 22 22 H 1.48501 * 109.47208 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47126 * 119.99947 * 21 19 17 24 24 H 1.48495 * 109.47063 * 239.99666 * 21 19 17 25 25 C 1.38229 * 119.94828 * 325.38849 * 12 11 9 26 26 C 1.46839 * 107.57013 * 342.45951 * 8 7 6 27 27 H 1.08999 * 109.47848 * 59.99836 * 1 2 3 28 28 H 1.09004 * 109.47057 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46985 * 299.99245 * 1 2 3 30 30 H 1.08998 * 109.46985 * 240.00755 * 2 1 3 31 31 H 1.08995 * 109.47388 * 120.00322 * 2 1 3 32 32 H 1.08994 * 110.50445 * 270.45589 * 6 5 3 33 33 H 1.08994 * 110.50783 * 33.01391 * 6 5 3 34 34 H 1.08995 * 110.47968 * 269.44864 * 7 6 5 35 35 H 1.09006 * 110.28300 * 147.15208 * 7 6 5 36 36 H 0.96989 * 119.99802 * 354.28077 * 11 9 8 37 37 H 1.08000 * 119.78587 * 359.95523 * 13 12 11 38 38 H 1.07996 * 119.83469 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.05474 * 179.74116 * 15 14 13 40 40 H 0.96996 * 120.00330 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.16426 * 0.02562 * 25 12 11 42 42 H 1.09000 * 109.67621 * 119.91409 * 26 8 7 43 43 H 1.08994 * 109.67588 * 240.41924 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.0117 2.9897 -0.0011 7 6 5.3581 2.7407 0.7110 8 7 5.6770 1.3299 0.4362 9 6 6.8847 0.7463 0.5672 10 8 7.0199 -0.4351 0.3131 11 7 7.9427 1.4721 0.9800 12 6 9.1676 0.8433 1.2310 13 6 10.3599 1.5073 0.9523 14 6 11.5776 0.8947 1.1973 15 6 11.6226 -0.3805 1.7145 16 6 10.4260 -1.0617 2.0058 17 6 10.4642 -2.3695 2.5421 18 1 9.7030 -3.0864 2.2720 19 6 11.4883 -2.7349 3.4229 20 7 12.3475 -1.8384 3.8352 21 14 11.6288 -4.5026 4.0101 22 1 10.5434 -5.3138 3.4026 23 1 12.9464 -5.0554 3.6052 24 1 11.5083 -4.5439 5.4895 25 6 9.1921 -0.4354 1.7555 26 6 4.4387 0.6725 -0.0006 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.1734 3.3352 -1.0221 33 1 3.4139 3.7118 0.5551 34 1 5.2580 2.9044 1.7839 35 1 6.1298 3.3907 0.2983 36 1 7.8551 2.4302 1.1029 37 1 10.3347 2.5061 0.5423 38 1 12.4963 1.4182 0.9773 39 1 12.5746 -0.8557 1.8999 40 1 13.0571 -2.0916 4.4460 41 1 8.2682 -0.9510 1.9719 42 1 4.5701 0.2733 -1.0063 43 1 4.1910 -0.1369 0.6861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579950438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:51 Heat of formation + Delta-G solvation = -22.299585 kcal Electronic energy + Delta-G solvation = -25743.104669 eV Core-core repulsion = 21981.677623 eV Total energy + Delta-G solvation = -3761.427046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85805 -39.72720 -38.03391 -36.94240 -34.51265 -33.64943 -33.09546 -32.73904 -30.26015 -29.81008 -28.34450 -26.08045 -25.27669 -24.71472 -22.85357 -21.55794 -20.90263 -19.81634 -19.58260 -18.35244 -17.67211 -17.11106 -16.75944 -15.86442 -15.68652 -15.60318 -15.25733 -14.71809 -14.48945 -14.39467 -14.00221 -13.60372 -13.30704 -13.18374 -12.98166 -12.85768 -12.70884 -12.52326 -12.26282 -12.09808 -11.97487 -11.67975 -11.48307 -11.19268 -11.13677 -10.97641 -10.44648 -10.33373 -10.25607 -9.73118 -9.53034 -9.34865 -9.24226 -9.03087 -8.77450 -7.38953 -6.92907 -6.62014 -4.35739 2.07164 2.26749 2.68294 2.81214 2.89952 3.12248 3.17381 3.19724 3.52973 3.93170 4.00619 4.11413 4.31192 4.63795 4.68275 4.71454 4.75181 4.79932 5.05099 5.16700 5.20812 5.27588 5.41798 5.50485 5.53834 5.62211 5.65392 5.90429 6.04172 6.18986 6.33336 6.60223 6.69349 6.99729 7.01821 7.08011 7.24263 7.30398 7.61641 7.71580 7.74842 7.93446 8.11809 8.18131 8.29376 8.66547 8.79488 8.96355 8.98222 10.32260 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002765 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.768081 B =10122.994346 C =11428.172563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.541 3.459 4 O -0.535 6.535 5 N -0.631 5.631 6 C 0.097 3.903 7 C 0.087 3.913 8 N -0.649 5.649 9 C 0.727 3.273 10 O -0.555 6.555 11 N -0.674 5.674 12 C 0.161 3.839 13 C -0.251 4.251 14 C -0.096 4.096 15 C -0.158 4.158 16 C 0.121 3.879 17 C -0.463 4.463 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.811 5.811 21 Si 0.911 3.089 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.276 1.276 25 C -0.200 4.200 26 C 0.356 3.644 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.395 0.605 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.277 0.723 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.923 7.212 -5.390 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.331 3.669 4 O -0.411 6.411 5 N -0.368 5.368 6 C -0.025 4.025 7 C -0.037 4.037 8 N -0.392 5.392 9 C 0.430 3.570 10 O -0.429 6.429 11 N -0.320 5.320 12 C 0.069 3.931 13 C -0.272 4.272 14 C -0.115 4.115 15 C -0.178 4.178 16 C 0.118 3.882 17 C -0.494 4.494 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.438 5.438 21 Si 0.736 3.264 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.221 4.221 26 C 0.147 3.853 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.229 0.771 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.095 0.905 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.104 6.760 -5.406 17.409 hybrid contribution 0.253 -0.045 0.482 0.546 sum -14.851 6.715 -4.924 17.027 Atomic orbital electron populations 1.21545 0.92671 1.01907 1.03321 1.21694 0.98759 0.92861 1.05005 1.20456 0.79112 0.92312 0.74996 1.90722 1.53622 1.46890 1.49838 1.48721 1.05347 1.08271 1.74485 1.22480 0.91945 0.86507 1.01612 1.22473 0.96639 0.83565 1.00976 1.47550 1.07685 1.10729 1.73270 1.15192 0.78463 0.84764 0.78622 1.91019 1.82644 1.13590 1.55689 1.42528 1.09263 1.10370 1.69870 1.17236 0.81714 0.94169 0.99947 1.20059 0.91435 1.00641 1.15091 1.20488 0.95148 0.95755 1.00131 1.21377 0.99150 0.94741 1.02483 1.17509 0.89992 0.92867 0.87837 1.19558 1.09121 0.97106 1.23605 0.90442 1.25848 0.94175 0.98988 0.95264 1.69782 1.13131 1.34412 1.26456 0.86209 0.79045 0.82399 0.78711 1.18519 1.19912 1.20105 1.21103 0.98261 0.94398 1.08384 1.21025 0.76342 0.87401 1.00572 0.91951 0.91742 0.91948 0.88430 0.88406 0.90198 0.88545 0.90479 0.89385 0.77118 0.89201 0.88856 0.86371 0.91202 0.87477 0.90460 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.20 37.16 0.34 -0.66 16 2 C -0.14 -1.08 5.56 -27.88 -0.16 -1.23 16 3 C 0.54 5.70 7.88 -10.98 -0.09 5.62 16 4 O -0.53 -7.32 16.29 5.56 0.09 -7.23 16 5 N -0.63 -6.24 3.34 -175.19 -0.58 -6.82 16 6 C 0.10 0.82 7.15 -2.76 -0.02 0.80 16 7 C 0.09 0.76 6.70 -2.94 -0.02 0.74 16 8 N -0.65 -8.18 3.35 -181.21 -0.61 -8.79 16 9 C 0.73 12.68 8.22 -86.92 -0.71 11.97 16 10 O -0.56 -12.14 14.49 5.29 0.08 -12.06 16 11 N -0.67 -11.62 5.29 -14.27 -0.08 -11.70 16 12 C 0.16 3.54 6.25 -83.76 -0.52 3.02 16 13 C -0.25 -5.33 9.97 -39.10 -0.39 -5.72 16 14 C -0.10 -2.19 10.02 -39.69 -0.40 -2.58 16 15 C -0.16 -4.07 8.62 -38.84 -0.33 -4.40 16 16 C 0.12 3.28 5.50 -106.85 -0.59 2.69 16 17 C -0.46 -12.63 9.04 -37.74 -0.34 -12.97 16 18 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 19 C 0.07 1.86 5.31 -17.34 -0.09 1.76 16 20 N -0.81 -21.19 10.97 55.55 0.61 -20.58 16 21 Si 0.91 19.21 29.56 -169.99 -5.03 14.19 16 22 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.20 -5.08 8.39 -38.69 -0.32 -5.40 16 26 C 0.36 3.84 6.77 -62.92 -0.43 3.41 16 27 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.64 7.97 -51.93 -0.41 0.22 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.61 7.56 -51.93 -0.39 0.21 16 36 H 0.39 5.26 7.50 -40.82 -0.31 4.95 16 37 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.12 3.15 6.48 -52.48 -0.34 2.81 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 41 H 0.11 2.81 6.51 -52.49 -0.34 2.47 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.85 7.75 -51.93 -0.40 0.44 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -32.93 360.15 -10.12 -43.05 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.96 Total: 7.48 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -4.07 Total: -2.97 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.66 Total: -47.89 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.17 Total: -19.29 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.93 -10.12 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579950438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.754 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds