Wall clock time and date at job start Tue Mar 31 2020 12:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46676 * 2 1 4 4 O 1.21283 * 120.00242 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99790 * 180.02562 * 3 2 1 6 6 C 1.47554 * 126.85571 * 179.97438 * 5 3 2 7 7 C 1.54337 * 104.00947 * 151.58800 * 6 5 3 8 8 N 1.47235 * 104.91537 * 28.35478 * 7 6 5 9 9 C 1.34772 * 126.21874 * 162.72262 * 8 7 6 10 10 O 1.21591 * 120.00261 * 179.68863 * 9 8 7 11 11 N 1.34782 * 119.99904 * 359.69336 * 9 8 7 12 12 C 1.39957 * 119.99649 * 174.28927 * 11 9 8 13 13 C 1.39291 * 119.94346 * 145.41655 * 12 11 9 14 14 C 1.38493 * 120.42674 * 179.97438 * 13 12 11 15 15 C 1.37680 * 120.31909 * 0.25494 * 14 13 12 16 16 C 1.40738 * 119.88784 * 359.50047 * 15 14 13 17 17 C 1.41401 * 120.21495 * 180.24918 * 16 15 14 18 18 H 1.07999 * 120.00631 * 214.44838 * 17 16 15 19 19 C 1.39938 * 119.99818 * 34.44762 * 17 16 15 20 20 N 1.30832 * 120.00192 * 5.53559 * 19 17 16 21 21 Si 1.86799 * 119.99929 * 185.53936 * 19 17 16 22 22 H 1.48501 * 109.47208 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47126 * 119.99947 * 21 19 17 24 24 H 1.48495 * 109.47063 * 239.99666 * 21 19 17 25 25 C 1.38229 * 119.94828 * 325.38849 * 12 11 9 26 26 C 1.46839 * 107.57013 * 342.45951 * 8 7 6 27 27 H 1.08999 * 109.47848 * 59.99836 * 1 2 3 28 28 H 1.09004 * 109.47057 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46985 * 299.99245 * 1 2 3 30 30 H 1.08998 * 109.46985 * 240.00755 * 2 1 3 31 31 H 1.08995 * 109.47388 * 120.00322 * 2 1 3 32 32 H 1.08994 * 110.50445 * 270.45589 * 6 5 3 33 33 H 1.08994 * 110.50783 * 33.01391 * 6 5 3 34 34 H 1.08995 * 110.47968 * 269.44864 * 7 6 5 35 35 H 1.09006 * 110.28300 * 147.15208 * 7 6 5 36 36 H 0.96989 * 119.99802 * 354.28077 * 11 9 8 37 37 H 1.08000 * 119.78587 * 359.95523 * 13 12 11 38 38 H 1.07996 * 119.83469 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.05474 * 179.74116 * 15 14 13 40 40 H 0.96996 * 120.00330 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.16426 * 0.02562 * 25 12 11 42 42 H 1.09000 * 109.67621 * 119.91409 * 26 8 7 43 43 H 1.08994 * 109.67588 * 240.41924 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.0117 2.9897 -0.0011 7 6 5.3581 2.7407 0.7110 8 7 5.6770 1.3299 0.4362 9 6 6.8847 0.7463 0.5672 10 8 7.0199 -0.4351 0.3131 11 7 7.9427 1.4721 0.9800 12 6 9.1676 0.8433 1.2310 13 6 10.3599 1.5073 0.9523 14 6 11.5776 0.8947 1.1973 15 6 11.6226 -0.3805 1.7145 16 6 10.4260 -1.0617 2.0058 17 6 10.4642 -2.3695 2.5421 18 1 9.7030 -3.0864 2.2720 19 6 11.4883 -2.7349 3.4229 20 7 12.3475 -1.8384 3.8352 21 14 11.6288 -4.5026 4.0101 22 1 10.5434 -5.3138 3.4026 23 1 12.9464 -5.0554 3.6052 24 1 11.5083 -4.5439 5.4895 25 6 9.1921 -0.4354 1.7555 26 6 4.4387 0.6725 -0.0006 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.1734 3.3352 -1.0221 33 1 3.4139 3.7118 0.5551 34 1 5.2580 2.9044 1.7839 35 1 6.1298 3.3907 0.2983 36 1 7.8551 2.4302 1.1029 37 1 10.3347 2.5061 0.5423 38 1 12.4963 1.4182 0.9773 39 1 12.5746 -0.8557 1.8999 40 1 13.0571 -2.0916 4.4460 41 1 8.2682 -0.9510 1.9719 42 1 4.5701 0.2733 -1.0063 43 1 4.1910 -0.1369 0.6861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579950438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:50 Heat of formation + Delta-G solvation = -42.788900 kcal Electronic energy + Delta-G solvation = -25743.993153 eV Core-core repulsion = 21981.677623 eV Total energy + Delta-G solvation = -3762.315529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93525 -40.88391 -39.38053 -38.35732 -36.19033 -35.00536 -34.29062 -33.68181 -31.70754 -31.04990 -29.99251 -27.30099 -26.98794 -25.56563 -23.61442 -23.15131 -22.69449 -21.05520 -20.58768 -19.74289 -19.08190 -18.13921 -17.72215 -17.34317 -17.09274 -16.62109 -16.51731 -16.38947 -15.90101 -15.61460 -15.11952 -14.74993 -14.63262 -14.33171 -14.14331 -14.02661 -13.93901 -13.55292 -13.39167 -13.22929 -12.99093 -12.88722 -12.86157 -12.81545 -12.61494 -12.16049 -12.08388 -12.00122 -11.51766 -11.27386 -11.14542 -11.07264 -10.78855 -10.20434 -9.78898 -9.28980 -8.70652 -8.50006 -6.37186 0.87068 1.00151 1.13443 1.38585 1.44790 1.48414 1.53528 1.91748 2.06676 2.24960 2.80601 2.88204 3.24326 3.54329 3.71714 3.92228 3.98765 4.12660 4.17208 4.30656 4.36794 4.49032 4.51563 4.63227 4.66061 4.72703 4.81891 4.96668 5.02106 5.02469 5.09977 5.11856 5.14979 5.23339 5.32888 5.36098 5.64435 5.82550 5.95368 6.08679 6.15882 6.27055 6.40137 6.72070 6.81100 6.94073 6.98461 7.03473 7.45167 8.44107 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002765 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.768081 B =10122.994346 C =11428.172563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 C 0.538 3.462 4 O -0.570 6.570 5 N -0.629 5.629 6 C 0.097 3.903 7 C 0.085 3.915 8 N -0.643 5.643 9 C 0.727 3.273 10 O -0.606 6.606 11 N -0.663 5.663 12 C 0.171 3.829 13 C -0.236 4.236 14 C -0.095 4.095 15 C -0.183 4.183 16 C 0.089 3.911 17 C -0.505 4.505 18 H 0.062 0.938 19 C 0.033 3.967 20 N -0.839 5.839 21 Si 0.982 3.018 22 H -0.265 1.265 23 H -0.261 1.261 24 H -0.265 1.265 25 C -0.223 4.223 26 C 0.356 3.644 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.417 0.583 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.285 0.715 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.236 8.671 -5.813 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.181 4.181 3 C 0.330 3.670 4 O -0.448 6.448 5 N -0.365 5.365 6 C -0.026 4.026 7 C -0.037 4.037 8 N -0.384 5.384 9 C 0.429 3.571 10 O -0.484 6.484 11 N -0.311 5.311 12 C 0.077 3.923 13 C -0.257 4.257 14 C -0.113 4.113 15 C -0.203 4.203 16 C 0.086 3.914 17 C -0.536 4.536 18 H 0.080 0.920 19 C -0.179 4.179 20 N -0.466 5.466 21 Si 0.804 3.196 22 H -0.189 1.189 23 H -0.186 1.186 24 H -0.190 1.190 25 C -0.245 4.245 26 C 0.147 3.853 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.255 0.745 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.458 8.301 -5.837 18.491 hybrid contribution 0.243 -0.311 0.533 0.663 sum -15.216 7.989 -5.304 17.986 Atomic orbital electron populations 1.21538 0.92616 1.02863 1.02249 1.21782 0.98790 0.91180 1.06383 1.20980 0.78875 0.93097 0.74046 1.90707 1.54325 1.48173 1.51619 1.48745 1.05069 1.08720 1.74003 1.22609 0.91546 0.85981 1.02441 1.22768 0.97572 0.81441 1.01930 1.47374 1.06563 1.12571 1.71859 1.15244 0.79462 0.84109 0.78282 1.90996 1.83724 1.15956 1.57710 1.42238 1.07896 1.11345 1.69652 1.17254 0.83974 0.93047 0.98005 1.20504 0.90228 1.02109 1.12883 1.20861 0.97320 0.94608 0.98543 1.21315 0.97923 0.96435 1.04633 1.17826 0.91219 0.93517 0.88832 1.19699 1.10370 0.97707 1.25858 0.92006 1.26629 0.93304 1.03245 0.94712 1.69830 1.13623 1.36234 1.26930 0.85156 0.79173 0.76859 0.78446 1.18910 1.18599 1.18981 1.21044 0.96883 0.96209 1.10352 1.21060 0.75900 0.87472 1.00893 0.92879 0.89741 0.93168 0.86668 0.87201 0.88998 0.87977 0.89525 0.86747 0.74454 0.84667 0.85671 0.88142 0.90423 0.89598 0.89953 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 71.98 0.66 -1.18 16 2 C -0.14 -1.92 5.56 29.85 0.17 -1.75 16 3 C 0.54 10.67 7.88 87.66 0.69 11.36 16 4 O -0.57 -15.19 16.29 -3.04 -0.05 -15.24 16 5 N -0.63 -11.27 3.34 -826.56 -2.76 -14.03 16 6 C 0.10 1.37 7.15 86.63 0.62 1.99 16 7 C 0.09 1.21 6.70 86.69 0.58 1.79 16 8 N -0.64 -14.92 3.35 -845.50 -2.83 -17.75 16 9 C 0.73 24.56 8.22 179.05 1.47 26.03 16 10 O -0.61 -26.88 14.49 -4.00 -0.06 -26.94 16 11 N -0.66 -21.44 5.29 -317.32 -1.68 -23.12 16 12 C 0.17 7.32 6.25 38.09 0.24 7.55 16 13 C -0.24 -9.34 9.97 22.58 0.23 -9.12 16 14 C -0.09 -4.15 10.02 22.20 0.22 -3.93 16 15 C -0.18 -9.65 8.62 22.75 0.20 -9.46 16 16 C 0.09 5.01 5.50 -21.31 -0.12 4.89 16 17 C -0.51 -29.09 9.04 23.46 0.21 -28.88 16 18 H 0.06 3.58 7.85 -2.91 -0.02 3.56 16 19 C 0.03 1.77 5.31 85.25 0.45 2.22 16 20 N -0.84 -44.99 10.97 21.83 0.24 -44.75 16 21 Si 0.98 40.36 29.56 68.60 2.03 42.38 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 C -0.22 -11.69 8.39 22.85 0.19 -11.49 16 26 C 0.36 7.11 6.77 170.67 1.16 8.27 16 27 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 28 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.24 7.97 -2.39 -0.02 1.23 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.40 8.03 -2.39 -0.02 1.38 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 1.08 7.56 -2.38 -0.02 1.06 16 36 H 0.42 9.55 7.50 -92.72 -0.70 8.85 16 37 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.10 5.55 6.48 -2.91 -0.02 5.53 16 40 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 41 H 0.09 4.77 6.51 -2.91 -0.02 4.75 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 1.64 7.75 -2.39 -0.02 1.62 16 Total: -1.00 -75.54 360.15 2.20 -73.35 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.34 Total: 27.80 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 6.97 Total: -1.70 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -7.03 Total: -99.65 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.11 Total: -42.17 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Total: -75.54 2.20 -73.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579950438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.557 kcal (2) G-P(sol) polarization free energy of solvation -75.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds