Wall clock time and date at job start Tue Mar 31 2020 12:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.86880 * 2 1 4 4 C 1.54479 * 109.99872 * 121.07482 * 2 1 3 5 5 C 1.54291 * 102.86180 * 140.91548 * 4 2 1 6 6 C 1.54062 * 102.57609 * 325.45536 * 5 4 2 7 7 N 1.47089 * 109.88037 * 238.99313 * 2 1 3 8 8 S 1.65595 * 125.62534 * 61.46630 * 7 2 1 9 9 O 1.42101 * 104.27695 * 26.05212 * 8 7 2 10 10 O 1.42100 * 104.28042 * 153.90976 * 8 7 2 11 11 C 1.81405 * 104.44824 * 269.98297 * 8 7 2 12 12 C 1.53004 * 109.47019 * 179.97438 * 11 8 7 13 13 C 1.50696 * 109.46879 * 179.97438 * 12 11 8 14 14 H 1.08002 * 120.00141 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00006 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99691 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00190 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47072 * 60.00249 * 17 15 13 19 19 H 1.48497 * 109.47230 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47000 * 300.00191 * 17 15 13 21 21 C 1.52185 * 110.64866 * 83.62477 * 5 4 2 22 22 C 1.53277 * 109.24105 * 178.16047 * 21 5 4 23 23 O 1.42917 * 109.29351 * 303.86883 * 22 21 5 24 24 C 1.42928 * 114.27234 * 61.85231 * 23 22 21 25 25 C 1.52186 * 110.66109 * 207.28904 * 5 4 2 26 26 H 1.08997 * 109.46892 * 179.54614 * 1 2 3 27 27 H 1.08994 * 109.47168 * 299.55234 * 1 2 3 28 28 H 1.09003 * 109.46396 * 59.55344 * 1 2 3 29 29 H 1.09001 * 110.72854 * 22.57858 * 4 2 1 30 30 H 1.08995 * 110.73915 * 259.26395 * 4 2 1 31 31 H 1.08999 * 110.37930 * 154.80801 * 6 5 4 32 32 H 1.09000 * 110.37907 * 277.05279 * 6 5 4 33 33 H 1.09000 * 109.46736 * 299.99890 * 11 8 7 34 34 H 1.08996 * 109.47194 * 59.99845 * 11 8 7 35 35 H 1.09001 * 109.47112 * 300.00092 * 12 11 8 36 36 H 1.09001 * 109.46515 * 59.99890 * 12 11 8 37 37 H 0.97005 * 120.00032 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.50576 * 298.08537 * 21 5 4 39 39 H 1.08999 * 109.51342 * 58.23004 * 21 5 4 40 40 H 1.09006 * 109.49595 * 183.92542 * 22 21 5 41 41 H 1.09003 * 109.53113 * 63.84003 * 22 21 5 42 42 H 1.08995 * 109.50078 * 178.21105 * 24 23 22 43 43 H 1.09002 * 109.53014 * 58.11428 * 24 23 22 44 44 H 1.08995 * 109.50433 * 301.77552 * 25 5 4 45 45 H 1.08998 * 109.50202 * 61.91075 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0583 -0.7493 1.2433 5 6 3.2729 -1.5220 0.6882 6 6 2.8200 -1.8772 -0.7408 7 7 2.0302 -0.7126 -1.1856 8 16 1.7535 -0.2789 -2.7596 9 8 1.5290 1.1231 -2.7026 10 8 2.8608 -0.8151 -3.4707 11 6 0.2269 -1.1504 -3.2076 12 6 -0.1387 -0.8262 -4.6575 13 6 -1.4066 -1.5506 -5.0298 14 1 -1.9023 -2.1790 -4.3046 15 6 -1.9344 -1.4104 -6.2958 16 7 -1.3310 -0.6447 -7.1786 17 14 -3.5065 -2.3078 -6.7571 18 1 -4.6065 -1.8724 -5.8596 19 1 -3.8613 -1.9933 -8.1643 20 1 -3.3010 -3.7715 -6.6142 21 6 4.5069 -0.6318 0.6573 22 6 5.7022 -1.4429 0.1451 23 8 5.8743 -2.6001 0.9660 24 6 4.7636 -3.4996 0.9536 25 6 3.5253 -2.7825 1.5028 26 1 -0.3633 -1.0276 -0.0081 27 1 -0.3633 0.5068 0.8939 28 1 -0.3632 0.5208 -0.8860 29 1 1.3057 -1.4378 1.6275 30 1 2.3687 -0.0452 2.0153 31 1 3.6849 -2.0191 -1.3889 32 1 2.2025 -2.7754 -0.7311 33 1 0.3775 -2.2247 -3.1019 34 1 -0.5807 -0.8302 -2.5493 35 1 -0.2894 0.2482 -4.7627 36 1 0.6689 -1.1461 -5.3159 37 1 -1.7021 -0.5463 -8.0694 38 1 4.3291 0.2137 -0.0073 39 1 4.7182 -0.2674 1.6626 40 1 6.6026 -0.8300 0.1869 41 1 5.5194 -1.7509 -0.8844 42 1 4.9893 -4.3650 1.5767 43 1 4.5713 -3.8271 -0.0681 44 1 3.6927 -2.5144 2.5459 45 1 2.6606 -3.4421 1.4300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592104843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:00 Heat of formation + Delta-G solvation = -134.062516 kcal Electronic energy + Delta-G solvation = -26299.021366 eV Core-core repulsion = 22635.899116 eV Total energy + Delta-G solvation = -3663.122250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69175 -37.85177 -36.64473 -35.45691 -33.92324 -33.62814 -31.45573 -31.25279 -31.10424 -28.03487 -25.70560 -25.60044 -23.92877 -23.28703 -21.82834 -20.88174 -19.11638 -18.46456 -17.58055 -16.56931 -16.26398 -16.22897 -16.06902 -15.43070 -15.15164 -14.98050 -14.60461 -14.46425 -13.84924 -13.72635 -13.48016 -13.39422 -12.84424 -12.72048 -12.52213 -12.39107 -12.20432 -11.77552 -11.67931 -11.59460 -11.56680 -11.53141 -11.37980 -11.20509 -11.09203 -11.02783 -10.91173 -10.63682 -10.45226 -10.38087 -10.29550 -9.78000 -9.59629 -9.34704 -8.76974 -8.51753 -6.13918 -4.19769 0.71633 3.01415 3.25711 3.30615 3.32353 3.68192 4.08070 4.20290 4.26367 4.36257 4.44056 4.64002 4.75983 4.80675 4.93350 4.99620 5.01436 5.18830 5.20710 5.21102 5.33701 5.39420 5.43445 5.46772 5.51841 5.52614 5.61418 5.63114 5.68676 5.70846 5.78321 5.84826 5.96320 5.98333 6.05340 6.18134 6.27208 6.47580 6.53096 6.99854 7.27402 7.33546 7.78602 8.15655 8.83243 9.44958 10.97106 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021699 B = 0.003462 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.095149 B = 8085.216998 C = 8140.806831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.150 3.850 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.070 4.070 6 C 0.122 3.878 7 N -1.013 6.013 8 S 2.603 3.397 9 O -0.961 6.961 10 O -0.964 6.964 11 C -0.590 4.590 12 C 0.029 3.971 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.140 4.140 22 C 0.056 3.944 23 O -0.384 6.384 24 C 0.057 3.943 25 C -0.138 4.138 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.033 0.967 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.248 -3.062 20.270 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.044 3.956 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.071 4.071 6 C -0.003 4.003 7 N -0.849 5.849 8 S 2.703 3.297 9 O -0.951 6.951 10 O -0.954 6.954 11 C -0.723 4.723 12 C -0.010 4.010 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.201 1.201 21 C -0.177 4.177 22 C -0.021 4.021 23 O -0.303 6.303 24 C -0.020 4.020 25 C -0.176 4.176 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.978 -2.394 19.599 22.123 hybrid contribution -1.780 -0.802 -0.368 1.986 sum 8.199 -3.196 19.231 21.148 Atomic orbital electron populations 1.22424 0.95186 1.02910 1.03384 1.21269 0.93751 0.96205 0.84400 0.90269 1.22695 0.96686 0.99079 0.96592 1.21083 0.95392 0.95743 0.94908 1.22045 0.95216 0.88258 0.94795 1.59001 1.65394 1.38409 1.22131 1.05357 0.77702 0.75309 0.71380 1.93532 1.87345 1.29338 1.84925 1.93527 1.50111 1.81071 1.70709 1.30570 1.18007 1.12914 1.10853 1.18959 0.98870 0.98476 0.84734 1.20951 1.08181 1.29073 0.97810 0.92112 1.25068 0.97696 0.95310 0.96359 1.69947 1.39726 1.37795 1.05372 0.86525 0.83063 0.80055 0.77604 1.20066 1.21034 1.20075 1.22012 0.94209 0.98786 1.02739 1.22708 0.98443 0.86854 0.94074 1.87904 1.40074 1.33604 1.68701 1.22656 0.86232 0.92210 1.00883 1.22028 0.99076 0.96336 1.00200 0.91563 0.90937 0.91639 0.90201 0.90180 0.89940 0.91475 0.86338 0.86163 0.94902 0.94929 0.92445 0.90278 0.90743 0.88739 0.92466 0.88858 0.92798 0.90599 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.74 37.16 0.32 -1.66 16 2 C 0.15 1.71 3.06 -66.83 -0.20 1.50 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.11 -0.94 5.43 -25.28 -0.14 -1.08 16 5 C -0.07 -0.63 0.54 -154.11 -0.08 -0.72 16 6 C 0.12 1.41 5.21 -2.90 -0.02 1.39 16 7 N -1.01 -13.92 3.30 -104.66 -0.35 -14.27 16 8 S 2.60 48.21 5.23 -107.50 -0.56 47.65 16 9 O -0.96 -20.21 17.48 -57.54 -1.01 -21.21 16 10 O -0.96 -20.31 17.29 -57.54 -0.99 -21.31 16 11 C -0.59 -11.51 6.12 37.16 0.23 -11.28 16 12 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 13 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 17 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.14 -1.32 4.83 -27.00 -0.13 -1.45 16 22 C 0.06 0.55 6.66 37.30 0.25 0.80 16 23 O -0.38 -4.04 10.74 -35.23 -0.38 -4.42 16 24 C 0.06 0.47 6.68 37.30 0.25 0.72 16 25 C -0.14 -1.03 4.89 -27.01 -0.13 -1.16 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.85 7.06 -51.93 -0.37 0.49 16 29 H 0.08 0.58 7.72 -51.93 -0.40 0.18 16 30 H 0.08 0.57 8.01 -51.93 -0.42 0.15 16 31 H 0.08 1.03 5.95 -51.93 -0.31 0.72 16 32 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 33 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 34 H 0.12 2.12 6.88 -51.93 -0.36 1.76 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.61 6.65 -51.93 -0.35 0.26 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.50 8.01 -51.93 -0.42 0.08 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -34.25 361.15 -9.93 -44.18 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.60 Total: -0.91 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -0.20 Total: -25.51 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.39 Total: -40.05 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -2.38 Total: -46.94 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 48.21 SS G_CDS: -0.56 Total: 47.65 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.25 -9.93 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592104843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.886 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds