Wall clock time and date at job start Tue Mar 31 2020 12:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.86880 * 2 1 4 4 C 1.54479 * 109.99872 * 121.07482 * 2 1 3 5 5 C 1.54291 * 102.86180 * 140.91548 * 4 2 1 6 6 C 1.54062 * 102.57609 * 325.45536 * 5 4 2 7 7 N 1.47089 * 109.88037 * 238.99313 * 2 1 3 8 8 S 1.65595 * 125.62534 * 61.46630 * 7 2 1 9 9 O 1.42101 * 104.27695 * 26.05212 * 8 7 2 10 10 O 1.42100 * 104.28042 * 153.90976 * 8 7 2 11 11 C 1.81405 * 104.44824 * 269.98297 * 8 7 2 12 12 C 1.53004 * 109.47019 * 179.97438 * 11 8 7 13 13 C 1.50696 * 109.46879 * 179.97438 * 12 11 8 14 14 H 1.08002 * 120.00141 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00006 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99691 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00190 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47072 * 60.00249 * 17 15 13 19 19 H 1.48497 * 109.47230 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47000 * 300.00191 * 17 15 13 21 21 C 1.52185 * 110.64866 * 83.62477 * 5 4 2 22 22 C 1.53277 * 109.24105 * 178.16047 * 21 5 4 23 23 O 1.42917 * 109.29351 * 303.86883 * 22 21 5 24 24 C 1.42928 * 114.27234 * 61.85231 * 23 22 21 25 25 C 1.52186 * 110.66109 * 207.28904 * 5 4 2 26 26 H 1.08997 * 109.46892 * 179.54614 * 1 2 3 27 27 H 1.08994 * 109.47168 * 299.55234 * 1 2 3 28 28 H 1.09003 * 109.46396 * 59.55344 * 1 2 3 29 29 H 1.09001 * 110.72854 * 22.57858 * 4 2 1 30 30 H 1.08995 * 110.73915 * 259.26395 * 4 2 1 31 31 H 1.08999 * 110.37930 * 154.80801 * 6 5 4 32 32 H 1.09000 * 110.37907 * 277.05279 * 6 5 4 33 33 H 1.09000 * 109.46736 * 299.99890 * 11 8 7 34 34 H 1.08996 * 109.47194 * 59.99845 * 11 8 7 35 35 H 1.09001 * 109.47112 * 300.00092 * 12 11 8 36 36 H 1.09001 * 109.46515 * 59.99890 * 12 11 8 37 37 H 0.97005 * 120.00032 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.50576 * 298.08537 * 21 5 4 39 39 H 1.08999 * 109.51342 * 58.23004 * 21 5 4 40 40 H 1.09006 * 109.49595 * 183.92542 * 22 21 5 41 41 H 1.09003 * 109.53113 * 63.84003 * 22 21 5 42 42 H 1.08995 * 109.50078 * 178.21105 * 24 23 22 43 43 H 1.09002 * 109.53014 * 58.11428 * 24 23 22 44 44 H 1.08995 * 109.50433 * 301.77552 * 25 5 4 45 45 H 1.08998 * 109.50202 * 61.91075 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0583 -0.7493 1.2433 5 6 3.2729 -1.5220 0.6882 6 6 2.8200 -1.8772 -0.7408 7 7 2.0302 -0.7126 -1.1856 8 16 1.7535 -0.2789 -2.7596 9 8 1.5290 1.1231 -2.7026 10 8 2.8608 -0.8151 -3.4707 11 6 0.2269 -1.1504 -3.2076 12 6 -0.1387 -0.8262 -4.6575 13 6 -1.4066 -1.5506 -5.0298 14 1 -1.9023 -2.1790 -4.3046 15 6 -1.9344 -1.4104 -6.2958 16 7 -1.3310 -0.6447 -7.1786 17 14 -3.5065 -2.3078 -6.7571 18 1 -4.6065 -1.8724 -5.8596 19 1 -3.8613 -1.9933 -8.1643 20 1 -3.3010 -3.7715 -6.6142 21 6 4.5069 -0.6318 0.6573 22 6 5.7022 -1.4429 0.1451 23 8 5.8743 -2.6001 0.9660 24 6 4.7636 -3.4996 0.9536 25 6 3.5253 -2.7825 1.5028 26 1 -0.3633 -1.0276 -0.0081 27 1 -0.3633 0.5068 0.8939 28 1 -0.3632 0.5208 -0.8860 29 1 1.3057 -1.4378 1.6275 30 1 2.3687 -0.0452 2.0153 31 1 3.6849 -2.0191 -1.3889 32 1 2.2025 -2.7754 -0.7311 33 1 0.3775 -2.2247 -3.1019 34 1 -0.5807 -0.8302 -2.5493 35 1 -0.2894 0.2482 -4.7627 36 1 0.6689 -1.1461 -5.3159 37 1 -1.7021 -0.5463 -8.0694 38 1 4.3291 0.2137 -0.0073 39 1 4.7182 -0.2674 1.6626 40 1 6.6026 -0.8300 0.1869 41 1 5.5194 -1.7509 -0.8844 42 1 4.9893 -4.3650 1.5767 43 1 4.5713 -3.8271 -0.0681 44 1 3.6927 -2.5144 2.5459 45 1 2.6606 -3.4421 1.4300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592104843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:00 Heat of formation + Delta-G solvation = -158.632899 kcal Electronic energy + Delta-G solvation = -26300.086818 eV Core-core repulsion = 22635.899116 eV Total energy + Delta-G solvation = -3664.187702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46620 -38.69378 -38.24093 -37.08032 -35.94166 -34.46203 -33.18357 -32.19953 -32.03828 -28.80924 -27.60470 -26.59305 -24.63382 -24.17789 -23.49104 -21.99318 -20.08400 -19.62082 -19.09214 -18.32085 -17.37575 -17.19441 -16.94376 -16.79645 -16.54789 -16.40918 -15.71180 -15.30683 -15.24824 -14.72224 -14.60954 -14.52023 -14.30157 -13.77510 -13.64194 -13.51869 -13.33859 -13.20670 -13.15499 -12.97784 -12.90180 -12.82695 -12.62367 -12.29542 -12.27590 -12.19841 -12.10103 -11.98514 -11.89086 -11.74456 -11.32077 -11.20236 -11.02068 -10.66496 -10.31696 -9.93842 -8.28216 -6.43124 -0.79247 1.39416 1.43186 1.51469 1.69790 2.36394 2.78363 2.99933 3.01159 3.05093 3.35152 3.58461 3.70375 3.94000 4.02949 4.07007 4.11345 4.15825 4.25697 4.26302 4.40038 4.42937 4.59396 4.64592 4.66437 4.73439 4.75569 4.79653 4.86100 4.92853 4.98058 5.05905 5.12268 5.19156 5.20875 5.21428 5.22715 5.31256 5.38328 5.43044 5.55520 5.64923 6.02470 6.29860 6.69923 7.27318 8.84028 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021699 B = 0.003462 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.095149 B = 8085.216998 C = 8140.806831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.140 3.860 3 H 0.069 0.931 4 C -0.099 4.099 5 C -0.065 4.065 6 C 0.111 3.889 7 N -1.006 6.006 8 S 2.623 3.377 9 O -0.992 6.992 10 O -0.995 6.995 11 C -0.587 4.587 12 C 0.022 3.978 13 C -0.540 4.540 14 H 0.076 0.924 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.976 3.024 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.262 1.262 21 C -0.139 4.139 22 C 0.054 3.946 23 O -0.398 6.398 24 C 0.048 3.952 25 C -0.130 4.130 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.268 0.732 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.041 0.959 42 H 0.111 0.889 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.009 -4.821 23.340 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.034 3.966 3 H 0.087 0.913 4 C -0.137 4.137 5 C -0.067 4.067 6 C -0.014 4.014 7 N -0.845 5.845 8 S 2.723 3.277 9 O -0.982 6.982 10 O -0.986 6.986 11 C -0.719 4.719 12 C -0.017 4.017 13 C -0.579 4.579 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.799 3.201 18 H -0.186 1.186 19 H -0.209 1.209 20 H -0.187 1.187 21 C -0.177 4.177 22 C -0.023 4.023 23 O -0.318 6.318 24 C -0.029 4.029 25 C -0.168 4.168 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.056 0.944 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.129 0.871 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.733 -4.159 22.672 24.649 hybrid contribution -1.305 -0.241 -1.267 1.835 sum 7.428 -4.400 21.404 23.080 Atomic orbital electron populations 1.22479 0.94669 1.03686 1.03381 1.21576 0.94299 0.96093 0.84583 0.91289 1.22708 0.96483 0.99368 0.95173 1.21096 0.95397 0.96761 0.93448 1.22373 0.94833 0.88038 0.96151 1.58565 1.65467 1.39589 1.20883 1.04341 0.76711 0.74310 0.72367 1.93483 1.87527 1.31268 1.85951 1.93480 1.51061 1.81376 1.72669 1.30465 1.19691 1.14624 1.07089 1.18809 0.97876 0.96594 0.88404 1.21460 1.08804 1.29191 0.98453 0.90541 1.26145 1.01606 0.96094 0.96344 1.70103 1.41819 1.39592 1.05903 0.85341 0.78396 0.79082 0.77307 1.18647 1.20912 1.18678 1.22005 0.94322 0.98249 1.03104 1.22707 0.99169 0.87116 0.93280 1.87884 1.41366 1.33896 1.68607 1.22873 0.86268 0.92565 1.01152 1.22002 0.99167 0.95370 1.00238 0.90303 0.88318 0.94397 0.87944 0.88169 0.91569 0.89369 0.84184 0.84135 0.97742 0.97777 0.92326 0.91983 0.89157 0.88071 0.94105 0.87071 0.93407 0.89252 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.61 8.74 71.98 0.63 -2.99 16 2 C 0.14 2.91 3.06 45.38 0.14 3.05 16 3 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.10 -1.27 5.43 31.53 0.17 -1.10 16 5 C -0.07 -1.01 0.54 -51.92 -0.03 -1.04 16 6 C 0.11 2.37 5.21 86.53 0.45 2.82 16 7 N -1.01 -26.85 3.30 -485.03 -1.60 -28.45 16 8 S 2.62 99.91 5.23 -56.49 -0.30 99.62 16 9 O -0.99 -43.43 17.48 -127.65 -2.23 -45.66 16 10 O -1.00 -43.74 17.29 -127.65 -2.21 -45.95 16 11 C -0.59 -23.04 6.12 71.98 0.44 -22.60 16 12 C 0.02 1.18 4.98 29.85 0.15 1.33 16 13 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 14 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 17 Si 0.98 43.22 29.54 68.60 2.03 45.25 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 C -0.14 -2.42 4.83 30.42 0.15 -2.27 16 22 C 0.05 1.04 6.66 72.07 0.48 1.52 16 23 O -0.40 -7.80 10.74 -148.98 -1.60 -9.40 16 24 C 0.05 0.68 6.68 72.07 0.48 1.16 16 25 C -0.13 -1.44 4.89 30.42 0.15 -1.29 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.04 0.95 7.06 -2.39 -0.02 0.94 16 29 H 0.10 0.94 7.72 -2.39 -0.02 0.92 16 30 H 0.10 0.97 8.01 -2.39 -0.02 0.95 16 31 H 0.07 1.65 5.95 -2.39 -0.01 1.64 16 32 H 0.09 1.52 7.91 -2.39 -0.02 1.50 16 33 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 34 H 0.14 4.88 6.88 -2.39 -0.02 4.86 16 35 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 38 H 0.06 1.29 7.91 -2.38 -0.02 1.27 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.72 8.14 -2.38 -0.02 1.71 16 41 H 0.04 0.90 6.65 -2.39 -0.02 0.88 16 42 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 0.73 7.67 -2.39 -0.02 0.71 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.10 0.77 8.01 -2.39 -0.02 0.75 16 Total: -1.00 -76.89 361.15 -0.76 -77.65 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.96 Total: 15.12 kcal Atomic # 6 Polarization: -55.01 SS G_CDS: 3.90 Total: -51.10 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.32 Total: -85.52 kcal Atomic # 8 Polarization: -94.97 SS G_CDS: -6.04 Total: -101.01 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 99.91 SS G_CDS: -0.30 Total: 99.62 kcal Total: -76.89 -0.76 -77.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592104843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.983 kcal (2) G-P(sol) polarization free energy of solvation -76.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds