Wall clock time and date at job start Tue Mar 31 2020 11:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47523 * 2 1 4 4 N 1.46507 * 109.47082 * 119.99949 * 2 1 3 5 5 C 1.36250 * 126.39493 * 300.02570 * 4 2 1 6 6 O 1.35205 * 125.01184 * 0.02562 * 5 4 2 7 7 N 1.30915 * 109.97353 * 179.97438 * 5 4 2 8 8 C 1.35554 * 109.71088 * 359.97438 * 7 5 4 9 9 C 1.40024 * 133.26322 * 180.02562 * 8 7 5 10 10 C 1.36206 * 120.08248 * 180.02562 * 9 8 7 11 11 C 1.40153 * 120.49635 * 0.02562 * 10 9 8 12 12 C 1.47511 * 119.95007 * 179.97438 * 11 10 9 13 13 O 1.21601 * 119.99864 * 320.43900 * 12 11 10 14 14 N 1.34767 * 120.00026 * 140.72243 * 12 11 10 15 15 C 1.46504 * 120.00341 * 4.56637 * 14 12 11 16 16 C 1.46507 * 119.99944 * 184.57369 * 14 12 11 17 17 C 1.50694 * 109.47076 * 89.99944 * 16 14 12 18 18 H 1.08002 * 120.00362 * 359.97438 * 17 16 14 19 19 C 1.37885 * 119.99784 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99762 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47191 * 89.99927 * 21 19 17 23 23 H 1.48501 * 109.46718 * 209.99570 * 21 19 17 24 24 H 1.48497 * 109.47173 * 329.99463 * 21 19 17 25 25 C 1.39538 * 120.10291 * 0.22464 * 11 10 9 26 26 C 1.38215 * 119.58997 * 359.51724 * 25 11 10 27 27 H 1.08995 * 109.47207 * 299.99925 * 1 2 3 28 28 H 1.09004 * 109.46812 * 60.00096 * 1 2 3 29 29 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47595 * 239.99435 * 2 1 3 31 31 H 1.09004 * 109.46523 * 300.00029 * 3 2 1 32 32 H 1.08999 * 109.47146 * 59.99161 * 3 2 1 33 33 H 1.08997 * 109.47581 * 179.97438 * 3 2 1 34 34 H 0.96699 * 113.99695 * 90.00557 * 6 5 4 35 35 H 1.07991 * 119.95952 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.75391 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.46808 * 86.02918 * 15 14 12 38 38 H 1.08993 * 109.47412 * 206.02803 * 15 14 12 39 39 H 1.08993 * 109.46806 * 326.03499 * 15 14 12 40 40 H 1.09008 * 109.47113 * 209.99555 * 16 14 12 41 41 H 1.09004 * 109.46894 * 329.99539 * 16 14 12 42 42 H 0.96996 * 119.99653 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.20225 * 179.74734 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7704 -0.3408 2.4895 6 8 1.0217 0.7161 2.8774 7 7 2.3631 -1.1798 3.3012 8 6 3.0267 -2.1188 2.5834 9 6 3.8077 -3.2249 2.9402 10 6 4.3626 -4.0090 1.9744 11 6 4.1593 -3.7183 0.6185 12 6 4.7664 -4.5752 -0.4174 13 8 5.8929 -5.0074 -0.2655 14 7 4.0749 -4.8744 -1.5347 15 6 2.7612 -4.2689 -1.7674 16 6 4.6367 -5.8052 -2.5167 17 6 4.2093 -7.2102 -2.1789 18 1 3.5822 -7.3918 -1.3185 19 6 4.6196 -8.2641 -2.9677 20 7 5.3836 -8.0430 -4.0151 21 14 4.0903 -10.0058 -2.5484 22 1 2.8105 -10.3133 -3.2360 23 1 5.1349 -10.9618 -2.9961 24 1 3.9050 -10.1270 -1.0801 25 6 3.3879 -2.6165 0.2469 26 6 2.8185 -1.8214 1.2236 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 0.0005 34 1 0.0831 0.5129 2.9902 35 1 3.9703 -3.4567 3.9823 36 1 4.9644 -4.8606 2.2556 37 1 2.8882 -3.2999 -2.2502 38 1 2.1696 -4.9205 -2.4104 39 1 2.2488 -4.1358 -0.8147 40 1 4.2758 -5.5450 -3.5119 41 1 5.7247 -5.7416 -2.4966 42 1 5.6726 -8.7845 -4.5697 43 1 3.2336 -2.3887 -0.7975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596911849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:17 Heat of formation + Delta-G solvation = 13.274080 kcal Electronic energy + Delta-G solvation = -26599.693226 eV Core-core repulsion = 22839.808770 eV Total energy + Delta-G solvation = -3759.884456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42564 -39.48779 -38.08505 -36.72152 -35.77873 -34.94971 -32.73053 -32.02982 -29.99523 -29.17932 -27.80887 -27.61501 -26.02515 -23.89892 -23.27664 -23.01311 -22.05758 -20.39371 -19.39291 -18.23551 -17.49187 -17.09344 -16.53643 -16.41045 -16.02785 -15.39208 -14.93750 -14.76733 -14.57954 -14.37838 -14.23421 -13.81502 -13.52969 -13.40039 -13.13515 -12.76974 -12.60288 -12.39755 -12.23362 -12.16368 -12.00282 -11.86041 -11.63813 -11.35124 -11.24262 -11.09699 -10.91423 -10.62517 -10.50143 -10.18109 -10.06841 -9.66285 -9.08715 -8.45671 -8.40748 -8.08649 -7.70104 -6.06472 -4.11568 0.63359 1.43902 1.97333 2.34702 3.29144 3.30076 3.36380 3.39836 3.44898 3.79999 4.01580 4.10175 4.25918 4.41479 4.43419 4.58261 4.79179 4.93219 4.98446 5.03395 5.19312 5.21864 5.23810 5.28026 5.36214 5.41903 5.55219 5.58883 5.65126 5.69919 5.78624 6.04316 6.13105 6.16545 6.33459 6.41309 6.48591 6.74848 7.02389 7.26546 7.40867 7.48516 7.62379 7.89864 8.20004 8.32638 8.85486 9.01514 9.53727 11.01603 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.003221 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.086517 B = 8690.159821 C = 9260.577806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 C -0.166 4.166 4 N -0.484 5.484 5 C 0.451 3.549 6 O -0.442 6.442 7 N -0.491 5.491 8 C 0.071 3.929 9 C -0.073 4.073 10 C -0.073 4.073 11 C -0.093 4.093 12 C 0.549 3.451 13 O -0.532 6.532 14 N -0.593 5.593 15 C 0.078 3.922 16 C 0.244 3.756 17 C -0.529 4.529 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.083 4.083 26 C 0.047 3.953 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.404 0.596 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.915 19.062 8.324 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.029 3.971 3 C -0.224 4.224 4 N -0.187 5.187 5 C 0.149 3.851 6 O -0.244 6.244 7 N -0.222 5.222 8 C -0.048 4.048 9 C -0.093 4.093 10 C -0.094 4.094 11 C -0.098 4.098 12 C 0.335 3.665 13 O -0.410 6.410 14 N -0.324 5.324 15 C -0.066 4.066 16 C 0.125 3.875 17 C -0.568 4.568 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.105 4.105 26 C -0.060 4.060 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.262 0.738 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.842 19.225 8.988 24.303 hybrid contribution -0.958 -1.007 -0.762 1.585 sum -12.801 18.218 8.226 23.737 Atomic orbital electron populations 1.22203 0.93314 1.03309 1.03455 1.21449 0.95320 0.94128 0.86239 1.22217 1.02301 0.94156 1.03693 1.45907 1.42811 1.23220 1.06781 1.20282 0.96243 0.89216 0.79344 1.84792 1.24231 1.28046 1.87340 1.70582 1.15775 1.04923 1.30904 1.18876 1.00870 0.96587 0.88495 1.19904 0.96690 0.92526 1.00184 1.20721 0.98392 0.99722 0.90577 1.19987 0.98699 0.96186 0.94883 1.17999 0.85822 0.80839 0.81791 1.90780 1.18277 1.53953 1.77974 1.48084 1.18050 1.44949 1.21357 1.21947 0.85964 0.97328 1.01320 1.19361 0.95895 0.86517 0.85693 1.21443 1.31822 0.91494 1.12027 0.92322 1.24939 0.94892 0.99298 0.94928 1.69932 1.35067 1.32079 1.16224 0.86486 0.78154 0.83935 0.78805 1.20653 1.21053 1.19796 1.20390 0.97515 0.94328 0.98234 1.18485 1.00104 0.90398 0.97015 0.91938 0.89974 0.91463 0.87918 0.90403 0.90841 0.91772 0.73765 0.84703 0.84129 0.93868 0.90596 0.91853 0.94819 0.93475 0.92668 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 9.24 37.16 0.34 -0.48 16 2 C 0.13 0.96 3.54 -67.93 -0.24 0.72 16 3 C -0.17 -1.09 9.24 37.16 0.34 -0.74 16 4 N -0.48 -5.16 2.68 -108.91 -0.29 -5.45 16 5 C 0.45 5.12 8.34 -88.92 -0.74 4.38 16 6 O -0.44 -3.50 11.53 -17.31 -0.20 -3.70 16 7 N -0.49 -6.99 11.29 -12.18 -0.14 -7.13 16 8 C 0.07 1.03 7.22 -84.61 -0.61 0.42 16 9 C -0.07 -1.03 10.03 -39.64 -0.40 -1.42 16 10 C -0.07 -1.14 9.54 -39.59 -0.38 -1.51 16 11 C -0.09 -1.56 5.23 -104.91 -0.55 -2.11 16 12 C 0.55 11.74 7.33 -12.49 -0.09 11.65 16 13 O -0.53 -13.60 16.46 5.28 0.09 -13.51 16 14 N -0.59 -12.55 2.86 -184.20 -0.53 -13.08 16 15 C 0.08 1.22 8.88 59.85 0.53 1.75 16 16 C 0.24 6.32 5.18 -5.19 -0.03 6.29 16 17 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 21 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.08 -1.17 7.38 -39.11 -0.29 -1.46 16 26 C 0.05 0.63 6.87 -83.89 -0.58 0.05 16 27 H 0.06 0.25 6.53 -51.93 -0.34 -0.09 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.71 7.61 -51.93 -0.40 0.32 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.51 6.95 -51.93 -0.36 0.15 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.40 1.18 8.43 45.56 0.38 1.56 16 35 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.14 2.16 8.05 -52.48 -0.42 1.73 16 37 H 0.04 0.55 6.90 -51.93 -0.36 0.19 16 38 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 39 H 0.06 0.88 5.81 -51.93 -0.30 0.58 16 40 H 0.03 0.87 8.07 -51.92 -0.42 0.45 16 41 H 0.05 1.38 7.36 -51.93 -0.38 0.99 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 43 H 0.14 1.67 5.02 -52.48 -0.26 1.40 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -35.85 357.35 -8.01 -43.85 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.93 Total: -1.41 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -3.10 Total: 3.98 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.22 Total: -51.26 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.11 Total: -17.21 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.85 -8.01 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596911849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.126 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds