Wall clock time and date at job start Tue Mar 31 2020 11:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47523 * 2 1 4 4 N 1.46507 * 109.47082 * 119.99949 * 2 1 3 5 5 C 1.36250 * 126.39493 * 300.02570 * 4 2 1 6 6 O 1.35205 * 125.01184 * 0.02562 * 5 4 2 7 7 N 1.30915 * 109.97353 * 179.97438 * 5 4 2 8 8 C 1.35554 * 109.71088 * 359.97438 * 7 5 4 9 9 C 1.40024 * 133.26322 * 180.02562 * 8 7 5 10 10 C 1.36206 * 120.08248 * 180.02562 * 9 8 7 11 11 C 1.40153 * 120.49635 * 0.02562 * 10 9 8 12 12 C 1.47511 * 119.95007 * 179.97438 * 11 10 9 13 13 O 1.21601 * 119.99864 * 320.43900 * 12 11 10 14 14 N 1.34767 * 120.00026 * 140.72243 * 12 11 10 15 15 C 1.46504 * 120.00341 * 4.56637 * 14 12 11 16 16 C 1.46507 * 119.99944 * 184.57369 * 14 12 11 17 17 C 1.50694 * 109.47076 * 89.99944 * 16 14 12 18 18 H 1.08002 * 120.00362 * 359.97438 * 17 16 14 19 19 C 1.37885 * 119.99784 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99762 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47191 * 89.99927 * 21 19 17 23 23 H 1.48501 * 109.46718 * 209.99570 * 21 19 17 24 24 H 1.48497 * 109.47173 * 329.99463 * 21 19 17 25 25 C 1.39538 * 120.10291 * 0.22464 * 11 10 9 26 26 C 1.38215 * 119.58997 * 359.51724 * 25 11 10 27 27 H 1.08995 * 109.47207 * 299.99925 * 1 2 3 28 28 H 1.09004 * 109.46812 * 60.00096 * 1 2 3 29 29 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47595 * 239.99435 * 2 1 3 31 31 H 1.09004 * 109.46523 * 300.00029 * 3 2 1 32 32 H 1.08999 * 109.47146 * 59.99161 * 3 2 1 33 33 H 1.08997 * 109.47581 * 179.97438 * 3 2 1 34 34 H 0.96699 * 113.99695 * 90.00557 * 6 5 4 35 35 H 1.07991 * 119.95952 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.75391 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.46808 * 86.02918 * 15 14 12 38 38 H 1.08993 * 109.47412 * 206.02803 * 15 14 12 39 39 H 1.08993 * 109.46806 * 326.03499 * 15 14 12 40 40 H 1.09008 * 109.47113 * 209.99555 * 16 14 12 41 41 H 1.09004 * 109.46894 * 329.99539 * 16 14 12 42 42 H 0.96996 * 119.99653 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.20225 * 179.74734 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7704 -0.3408 2.4895 6 8 1.0217 0.7161 2.8774 7 7 2.3631 -1.1798 3.3012 8 6 3.0267 -2.1188 2.5834 9 6 3.8077 -3.2249 2.9402 10 6 4.3626 -4.0090 1.9744 11 6 4.1593 -3.7183 0.6185 12 6 4.7664 -4.5752 -0.4174 13 8 5.8929 -5.0074 -0.2655 14 7 4.0749 -4.8744 -1.5347 15 6 2.7612 -4.2689 -1.7674 16 6 4.6367 -5.8052 -2.5167 17 6 4.2093 -7.2102 -2.1789 18 1 3.5822 -7.3918 -1.3185 19 6 4.6196 -8.2641 -2.9677 20 7 5.3836 -8.0430 -4.0151 21 14 4.0903 -10.0058 -2.5484 22 1 2.8105 -10.3133 -3.2360 23 1 5.1349 -10.9618 -2.9961 24 1 3.9050 -10.1270 -1.0801 25 6 3.3879 -2.6165 0.2469 26 6 2.8185 -1.8214 1.2236 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 0.0005 34 1 0.0831 0.5129 2.9902 35 1 3.9703 -3.4567 3.9823 36 1 4.9644 -4.8606 2.2556 37 1 2.8882 -3.2999 -2.2502 38 1 2.1696 -4.9205 -2.4104 39 1 2.2488 -4.1358 -0.8147 40 1 4.2758 -5.5450 -3.5119 41 1 5.7247 -5.7416 -2.4966 42 1 5.6726 -8.7845 -4.5697 43 1 3.2336 -2.3887 -0.7975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596911849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:16 Heat of formation + Delta-G solvation = -13.258162 kcal Electronic energy + Delta-G solvation = -26600.843751 eV Core-core repulsion = 22839.808770 eV Total energy + Delta-G solvation = -3761.034981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.38593 -40.97980 -39.06445 -37.53125 -36.78631 -36.66983 -34.75168 -33.02577 -31.21840 -30.30392 -29.35846 -28.23211 -27.54934 -25.54513 -24.15195 -24.05654 -23.43239 -21.27030 -20.77649 -19.06811 -18.73858 -18.67969 -17.96092 -17.65361 -17.24048 -16.87237 -16.29838 -16.11002 -15.74379 -15.32478 -15.27317 -15.03587 -14.77073 -14.32339 -14.09935 -13.99197 -13.85695 -13.58687 -13.41324 -13.15685 -13.08516 -13.03381 -12.86097 -12.65155 -12.52580 -12.46336 -12.23046 -12.21078 -11.96965 -11.72126 -11.45739 -11.06064 -10.78307 -10.63330 -9.55789 -9.39163 -9.17134 -8.22310 -6.37128 -0.44988 0.31506 1.11604 1.35964 1.38219 1.41164 1.51557 1.89053 2.26925 2.42554 2.58725 2.76055 3.07521 3.21766 3.52224 3.65845 3.80463 3.92381 4.05264 4.14997 4.20481 4.26087 4.34270 4.48218 4.57384 4.64976 4.67015 4.80287 4.85769 4.90411 4.97565 4.99619 5.10339 5.16824 5.22096 5.22421 5.35380 5.38564 5.53968 5.63597 5.70839 5.81330 6.05234 6.56962 6.64076 6.65502 6.72503 7.23971 7.39167 8.84895 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.003221 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.086517 B = 8690.159821 C = 9260.577806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 C -0.162 4.162 4 N -0.475 5.475 5 C 0.472 3.528 6 O -0.437 6.437 7 N -0.527 5.527 8 C 0.063 3.937 9 C -0.071 4.071 10 C -0.081 4.081 11 C -0.118 4.118 12 C 0.545 3.455 13 O -0.590 6.590 14 N -0.599 5.599 15 C 0.074 3.926 16 C 0.258 3.742 17 C -0.546 4.546 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.927 5.927 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.281 1.281 24 H -0.273 1.273 25 C -0.061 4.061 26 C 0.041 3.959 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.430 0.570 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.002 0.998 42 H 0.268 0.732 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 20.837 8.693 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 C -0.219 4.219 4 N -0.177 5.177 5 C 0.169 3.831 6 O -0.242 6.242 7 N -0.259 5.259 8 C -0.056 4.056 9 C -0.091 4.091 10 C -0.103 4.103 11 C -0.122 4.122 12 C 0.335 3.665 13 O -0.472 6.472 14 N -0.329 5.329 15 C -0.068 4.068 16 C 0.137 3.863 17 C -0.585 4.585 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.566 5.566 21 Si 0.792 3.208 22 H -0.187 1.187 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.082 4.082 26 C -0.068 4.068 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.293 0.707 35 H 0.170 0.830 36 H 0.149 0.851 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.020 0.980 42 H 0.077 0.923 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.023 21.057 9.338 27.501 hybrid contribution -0.105 -1.322 -0.838 1.569 sum -15.128 19.735 8.500 26.279 Atomic orbital electron populations 1.22204 0.91140 1.03391 1.05091 1.21859 0.97038 0.94195 0.84967 1.22202 1.01114 0.93776 1.04824 1.46150 1.41634 1.22216 1.07724 1.20381 0.94972 0.88398 0.79318 1.84773 1.25960 1.26499 1.87005 1.70577 1.17355 1.06044 1.31933 1.19112 1.00547 0.96641 0.89330 1.19980 0.96272 0.92193 1.00614 1.20649 0.98973 1.00096 0.90533 1.19539 1.01437 0.97448 0.93821 1.18660 0.85140 0.80559 0.82189 1.90729 1.20833 1.56524 1.79115 1.48065 1.19919 1.44307 1.20572 1.22246 0.83230 0.98503 1.02785 1.18853 0.93424 0.87173 0.86808 1.21706 1.31978 0.92862 1.11937 0.92833 1.25841 0.94735 1.03679 0.94690 1.70046 1.35923 1.33524 1.17136 0.85416 0.78427 0.78495 0.78493 1.18723 1.20616 1.19806 1.20343 0.95751 0.92850 0.99237 1.18421 1.00617 0.91400 0.96340 0.90773 0.87940 0.92126 0.87316 0.87975 0.91017 0.93587 0.70748 0.82960 0.85078 0.90234 0.90819 0.89837 0.95102 0.97991 0.92327 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.24 71.98 0.66 -0.27 16 2 C 0.12 1.32 3.54 44.99 0.16 1.48 16 3 C -0.16 -1.58 9.24 71.98 0.66 -0.91 16 4 N -0.48 -8.77 2.68 -609.50 -1.64 -10.40 16 5 C 0.47 9.36 8.34 179.75 1.50 10.86 16 6 O -0.44 -5.30 11.53 -84.86 -0.98 -6.28 16 7 N -0.53 -14.00 11.29 -306.25 -3.46 -17.46 16 8 C 0.06 1.77 7.22 39.61 0.29 2.05 16 9 C -0.07 -1.97 10.03 22.23 0.22 -1.74 16 10 C -0.08 -2.60 9.54 22.26 0.21 -2.38 16 11 C -0.12 -4.03 5.23 -20.05 -0.10 -4.13 16 12 C 0.55 24.30 7.33 86.69 0.64 24.94 16 13 O -0.59 -32.22 16.46 -4.04 -0.07 -32.28 16 14 N -0.60 -25.95 2.86 -854.94 -2.44 -28.39 16 15 C 0.07 2.21 8.88 127.77 1.13 3.35 16 16 C 0.26 13.97 5.18 85.63 0.44 14.41 16 17 C -0.55 -31.57 9.39 25.60 0.24 -31.33 16 18 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 19 C 0.01 0.56 5.46 84.66 0.46 1.03 16 20 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 21 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 C -0.06 -1.62 7.38 22.58 0.17 -1.45 16 26 C 0.04 1.01 6.87 38.69 0.27 1.27 16 27 H 0.07 0.26 6.53 -2.39 -0.02 0.24 16 28 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.11 1.10 7.61 -2.39 -0.02 1.09 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.74 6.95 -2.39 -0.02 0.72 16 33 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.43 0.67 8.43 -74.06 -0.62 0.04 16 35 H 0.15 3.53 8.06 -2.92 -0.02 3.51 16 36 H 0.13 4.31 8.05 -2.91 -0.02 4.29 16 37 H 0.08 1.80 6.90 -2.39 -0.02 1.78 16 38 H 0.07 2.24 8.04 -2.39 -0.02 2.23 16 39 H 0.08 2.17 5.81 -2.39 -0.01 2.16 16 40 H 0.03 1.66 8.07 -2.38 -0.02 1.64 16 41 H 0.00 0.12 7.36 -2.39 -0.02 0.10 16 42 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.15 3.40 5.02 -2.91 -0.01 3.38 16 Total: -1.00 -81.61 357.35 1.11 -80.50 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.43 Total: 5.82 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.95 Total: 17.16 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -7.25 Total: -111.76 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.04 Total: -38.56 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -81.61 1.11 -80.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596911849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.246 kcal (2) G-P(sol) polarization free energy of solvation -81.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds