Wall clock time and date at job start Tue Mar 31 2020 11:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46975 * 2 1 4 4 H 1.08998 * 109.47197 * 305.22701 * 3 2 1 5 5 C 1.50701 * 109.46772 * 185.23163 * 3 2 1 6 6 H 1.07992 * 120.00347 * 244.95265 * 5 3 2 7 7 C 1.37885 * 119.99892 * 64.95109 * 5 3 2 8 8 N 1.31514 * 119.99940 * 6.45581 * 7 5 3 9 9 Si 1.86799 * 119.99960 * 186.45069 * 7 5 3 10 10 H 1.48503 * 109.47139 * 94.99441 * 9 7 5 11 11 H 1.48492 * 109.47430 * 214.99569 * 9 7 5 12 12 H 1.48500 * 109.47379 * 334.99763 * 9 7 5 13 13 N 1.46495 * 109.47542 * 65.23339 * 3 2 1 14 14 C 1.34776 * 120.00102 * 274.99789 * 13 3 2 15 15 O 1.21580 * 120.00121 * 0.02562 * 14 13 3 16 16 N 1.34776 * 120.00061 * 179.97438 * 14 13 3 17 17 C 1.39434 * 119.99681 * 185.11664 * 16 14 13 18 18 C 1.39150 * 119.86042 * 324.14300 * 17 16 14 19 19 C 1.37780 * 120.10686 * 180.02562 * 18 17 16 20 20 C 1.39435 * 119.67519 * 359.97438 * 19 18 17 21 21 C 1.39908 * 120.13560 * 359.97438 * 20 19 18 22 22 C 1.37482 * 119.91161 * 0.03195 * 21 20 19 23 23 C 1.50564 * 119.18874 * 180.02562 * 21 20 19 24 24 C 1.52694 * 109.90730 * 326.02288 * 23 21 20 25 25 N 1.46038 * 111.03024 * 51.12882 * 24 23 21 26 26 C 1.34797 * 121.20846 * 322.26083 * 25 24 23 27 27 O 1.21587 * 120.43078 * 182.71370 * 26 25 24 28 28 H 1.08990 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46904 * 300.00434 * 1 2 3 30 30 H 1.09000 * 109.46800 * 59.99677 * 1 2 3 31 31 H 1.08998 * 109.46904 * 239.99566 * 2 1 3 32 32 H 1.09003 * 109.46550 * 119.99871 * 2 1 3 33 33 H 0.96994 * 120.00087 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00294 * 94.99765 * 13 3 2 35 35 H 0.96992 * 120.00081 * 5.11933 * 16 14 13 36 36 H 1.08000 * 119.94656 * 0.02562 * 18 17 16 37 37 H 1.08010 * 120.16223 * 180.25486 * 19 18 17 38 38 H 1.07995 * 120.05395 * 180.02562 * 22 21 20 39 39 H 1.09008 * 109.39926 * 205.89615 * 23 21 20 40 40 H 1.08996 * 109.33016 * 86.11637 * 23 21 20 41 41 H 1.08999 * 109.17136 * 290.73187 * 24 23 21 42 42 H 1.09002 * 109.12551 * 171.49790 * 24 23 21 43 43 H 0.97010 * 119.39736 * 142.27840 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 -0.8394 5 6 3.5414 1.4444 -0.1296 6 1 4.1528 1.8151 0.6798 7 6 4.1346 0.9728 -1.2815 8 7 3.3921 0.6404 -2.3148 9 14 5.9928 0.8062 -1.3744 10 1 6.3832 -0.5838 -1.0269 11 1 6.4496 1.1189 -2.7523 12 1 6.6230 1.7511 -0.4177 13 7 1.6573 2.0958 1.2541 14 6 0.4405 2.6626 1.3747 15 8 -0.3398 2.6313 0.4428 16 7 0.0882 3.2632 2.5286 17 6 -1.2062 3.7553 2.6916 18 6 -1.8742 4.3196 1.6091 19 6 -3.1532 4.8078 1.7645 20 6 -3.7740 4.7330 3.0108 21 6 -3.1012 4.1643 4.0977 22 6 -1.8250 3.6790 3.9363 23 6 -3.7919 4.0939 5.4337 24 6 -4.6933 5.3126 5.6178 25 7 -5.5738 5.4918 4.4666 26 6 -5.1429 5.2478 3.2129 27 8 -5.8722 5.4486 2.2610 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8094 0.3090 -3.1253 34 1 2.2796 2.1205 1.9978 35 1 0.7351 3.3532 3.2457 36 1 -1.3894 4.3749 0.6457 37 1 -3.6741 5.2423 0.9240 38 1 -1.3037 3.2392 4.7736 39 1 -3.0446 4.0733 6.2270 40 1 -4.3949 3.1872 5.4808 41 1 -4.0737 6.2015 5.7362 42 1 -5.2989 5.1767 6.5138 43 1 -6.4855 5.7923 4.6067 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596978210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:27 Heat of formation + Delta-G solvation = -44.662242 kcal Electronic energy + Delta-G solvation = -26099.861325 eV Core-core repulsion = 22337.464561 eV Total energy + Delta-G solvation = -3762.396764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87911 -39.89949 -38.07745 -36.43284 -35.33303 -34.22035 -32.50044 -32.12272 -31.10899 -29.56679 -29.12463 -26.93978 -24.29239 -23.91962 -22.90698 -22.04981 -20.91725 -19.62262 -19.48913 -18.39046 -17.57152 -17.23777 -16.92419 -16.01935 -15.75751 -15.16710 -15.08379 -14.99284 -14.38610 -14.29493 -14.07047 -13.75848 -13.42552 -13.38457 -12.93354 -12.71623 -12.67342 -12.52761 -12.00110 -11.78324 -11.53251 -11.38298 -11.17815 -11.03058 -10.84466 -10.38933 -10.27028 -10.14567 -10.05652 -9.67950 -9.42120 -9.35687 -9.12431 -8.83784 -8.54943 -8.14541 -7.81513 -6.18454 -4.25515 0.82562 1.35172 2.72748 3.03333 3.05809 3.21462 3.29450 3.30990 3.63490 3.94023 4.28428 4.30613 4.45368 4.47861 4.75897 4.83492 4.89925 5.03556 5.14966 5.20401 5.38857 5.43917 5.55176 5.62816 5.93886 6.09778 6.33382 6.34242 6.34683 6.39586 6.55633 6.60627 6.65533 6.94249 6.98917 7.01180 7.09612 7.24701 7.29081 7.38029 7.60279 7.77022 7.87865 8.04712 8.06550 8.67105 8.77816 9.15601 9.41565 10.89355 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.002595 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.266569 B =10788.847691 C =11070.594127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.285 3.715 4 H 0.057 0.943 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.716 5.716 14 C 0.691 3.309 15 O -0.570 6.570 16 N -0.696 5.696 17 C 0.216 3.784 18 C -0.134 4.134 19 C -0.033 4.033 20 C -0.173 4.173 21 C -0.033 4.033 22 C -0.164 4.164 23 C -0.100 4.100 24 C 0.116 3.884 25 N -0.731 5.731 26 C 0.570 3.430 27 O -0.540 6.540 28 H 0.022 0.978 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.404 0.596 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 7.449 18.912 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.183 3.817 4 H 0.075 0.925 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.367 5.367 14 C 0.391 3.609 15 O -0.447 6.447 16 N -0.343 5.343 17 C 0.117 3.883 18 C -0.155 4.155 19 C -0.053 4.053 20 C -0.177 4.177 21 C -0.035 4.035 22 C -0.185 4.185 23 C -0.137 4.137 24 C -0.008 4.008 25 N -0.385 5.385 26 C 0.359 3.641 27 O -0.418 6.418 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.218 0.782 35 H 0.239 0.761 36 H 0.170 0.830 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -11.843 7.291 17.240 22.150 hybrid contribution 1.388 -0.144 0.792 1.605 sum -10.455 7.146 18.032 22.034 Atomic orbital electron populations 1.21821 0.97961 0.98094 1.01524 1.21881 0.93004 0.99854 1.01335 1.18757 0.94265 0.88752 0.79951 0.92543 1.21179 0.90484 1.43779 1.02149 0.92080 1.24884 0.98535 0.95035 0.95075 1.69965 1.35385 1.42823 1.03426 0.86468 0.84893 0.78422 0.77518 1.20549 1.21083 1.19859 1.45850 1.13066 1.58348 1.19396 1.16129 0.83823 0.78795 0.82106 1.90913 1.51426 1.64382 1.38012 1.42857 1.11530 1.61321 1.18635 1.17732 0.84705 0.91926 0.93892 1.21463 0.95387 0.98261 1.00347 1.21055 0.93658 0.94942 0.95603 1.19547 0.94994 1.08115 0.95044 1.19578 0.93283 0.96425 0.94194 1.20557 0.94947 1.05726 0.97226 1.20809 0.99008 0.99045 0.94847 1.21265 0.93210 0.98025 0.88307 1.45705 1.16311 1.70287 1.06170 1.18269 0.87093 0.76351 0.82338 1.90812 1.57733 1.52705 1.40539 0.95884 0.94137 0.92925 0.89801 0.94841 0.92488 0.78188 0.76093 0.83037 0.84661 0.85231 0.88605 0.89516 0.91507 0.89504 0.76224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.69 16 2 C -0.12 -2.85 5.49 -26.73 -0.15 -3.00 16 3 C 0.28 6.86 2.11 -69.09 -0.15 6.71 16 4 H 0.06 1.60 7.55 -51.93 -0.39 1.21 16 5 C -0.54 -13.68 8.67 -34.44 -0.30 -13.98 16 6 H 0.06 1.48 7.73 -52.49 -0.41 1.08 16 7 C 0.07 1.80 5.21 -17.82 -0.09 1.71 16 8 N -0.88 -24.35 11.98 55.43 0.66 -23.69 16 9 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 13 N -0.72 -13.85 5.03 -59.82 -0.30 -14.15 16 14 C 0.69 12.93 6.98 -86.92 -0.61 12.32 16 15 O -0.57 -12.69 10.91 5.29 0.06 -12.63 16 16 N -0.70 -9.70 5.32 -14.20 -0.08 -9.77 16 17 C 0.22 2.99 6.29 -83.70 -0.53 2.47 16 18 C -0.13 -2.08 8.67 -39.41 -0.34 -2.42 16 19 C -0.03 -0.48 9.63 -39.30 -0.38 -0.86 16 20 C -0.17 -2.26 5.78 -104.99 -0.61 -2.87 16 21 C -0.03 -0.35 5.68 -104.34 -0.59 -0.94 16 22 C -0.16 -1.78 9.63 -39.50 -0.38 -2.16 16 23 C -0.10 -0.64 6.04 -28.11 -0.17 -0.81 16 24 C 0.12 0.64 7.04 -4.45 -0.03 0.60 16 25 N -0.73 -6.30 5.58 -61.79 -0.34 -6.65 16 26 C 0.57 7.47 7.78 -12.41 -0.10 7.37 16 27 O -0.54 -9.05 17.45 5.29 0.09 -8.95 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 30 H 0.05 1.24 7.86 -51.93 -0.41 0.84 16 31 H 0.08 2.18 6.63 -51.93 -0.34 1.83 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.39 6.31 8.55 -40.82 -0.35 5.96 16 35 H 0.40 4.15 8.84 -40.82 -0.36 3.79 16 36 H 0.15 2.69 6.24 -52.49 -0.33 2.36 16 37 H 0.14 1.93 7.84 -52.48 -0.41 1.52 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.10 0.39 8.07 -51.92 -0.42 -0.03 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.40 2.78 8.92 -40.82 -0.36 2.42 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -32.91 351.56 -9.47 -42.38 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.75 Total: 11.57 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -4.10 Total: 1.47 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.06 Total: -54.25 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.15 Total: -21.58 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.91 -9.47 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596978210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.280 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds