Wall clock time and date at job start Tue Mar 31 2020 11:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46975 * 2 1 4 4 H 1.08998 * 109.47197 * 305.22701 * 3 2 1 5 5 C 1.50701 * 109.46772 * 185.23163 * 3 2 1 6 6 H 1.07992 * 120.00347 * 244.95265 * 5 3 2 7 7 C 1.37885 * 119.99892 * 64.95109 * 5 3 2 8 8 N 1.31514 * 119.99940 * 6.45581 * 7 5 3 9 9 Si 1.86799 * 119.99960 * 186.45069 * 7 5 3 10 10 H 1.48503 * 109.47139 * 94.99441 * 9 7 5 11 11 H 1.48492 * 109.47430 * 214.99569 * 9 7 5 12 12 H 1.48500 * 109.47379 * 334.99763 * 9 7 5 13 13 N 1.46495 * 109.47542 * 65.23339 * 3 2 1 14 14 C 1.34776 * 120.00102 * 274.99789 * 13 3 2 15 15 O 1.21580 * 120.00121 * 0.02562 * 14 13 3 16 16 N 1.34776 * 120.00061 * 179.97438 * 14 13 3 17 17 C 1.39434 * 119.99681 * 185.11664 * 16 14 13 18 18 C 1.39150 * 119.86042 * 324.14300 * 17 16 14 19 19 C 1.37780 * 120.10686 * 180.02562 * 18 17 16 20 20 C 1.39435 * 119.67519 * 359.97438 * 19 18 17 21 21 C 1.39908 * 120.13560 * 359.97438 * 20 19 18 22 22 C 1.37482 * 119.91161 * 0.03195 * 21 20 19 23 23 C 1.50564 * 119.18874 * 180.02562 * 21 20 19 24 24 C 1.52694 * 109.90730 * 326.02288 * 23 21 20 25 25 N 1.46038 * 111.03024 * 51.12882 * 24 23 21 26 26 C 1.34797 * 121.20846 * 322.26083 * 25 24 23 27 27 O 1.21587 * 120.43078 * 182.71370 * 26 25 24 28 28 H 1.08990 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46904 * 300.00434 * 1 2 3 30 30 H 1.09000 * 109.46800 * 59.99677 * 1 2 3 31 31 H 1.08998 * 109.46904 * 239.99566 * 2 1 3 32 32 H 1.09003 * 109.46550 * 119.99871 * 2 1 3 33 33 H 0.96994 * 120.00087 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00294 * 94.99765 * 13 3 2 35 35 H 0.96992 * 120.00081 * 5.11933 * 16 14 13 36 36 H 1.08000 * 119.94656 * 0.02562 * 18 17 16 37 37 H 1.08010 * 120.16223 * 180.25486 * 19 18 17 38 38 H 1.07995 * 120.05395 * 180.02562 * 22 21 20 39 39 H 1.09008 * 109.39926 * 205.89615 * 23 21 20 40 40 H 1.08996 * 109.33016 * 86.11637 * 23 21 20 41 41 H 1.08999 * 109.17136 * 290.73187 * 24 23 21 42 42 H 1.09002 * 109.12551 * 171.49790 * 24 23 21 43 43 H 0.97010 * 119.39736 * 142.27840 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 -0.8394 5 6 3.5414 1.4444 -0.1296 6 1 4.1528 1.8151 0.6798 7 6 4.1346 0.9728 -1.2815 8 7 3.3921 0.6404 -2.3148 9 14 5.9928 0.8062 -1.3744 10 1 6.3832 -0.5838 -1.0269 11 1 6.4496 1.1189 -2.7523 12 1 6.6230 1.7511 -0.4177 13 7 1.6573 2.0958 1.2541 14 6 0.4405 2.6626 1.3747 15 8 -0.3398 2.6313 0.4428 16 7 0.0882 3.2632 2.5286 17 6 -1.2062 3.7553 2.6916 18 6 -1.8742 4.3196 1.6091 19 6 -3.1532 4.8078 1.7645 20 6 -3.7740 4.7330 3.0108 21 6 -3.1012 4.1643 4.0977 22 6 -1.8250 3.6790 3.9363 23 6 -3.7919 4.0939 5.4337 24 6 -4.6933 5.3126 5.6178 25 7 -5.5738 5.4918 4.4666 26 6 -5.1429 5.2478 3.2129 27 8 -5.8722 5.4486 2.2610 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8094 0.3090 -3.1253 34 1 2.2796 2.1205 1.9978 35 1 0.7351 3.3532 3.2457 36 1 -1.3894 4.3749 0.6457 37 1 -3.6741 5.2423 0.9240 38 1 -1.3037 3.2392 4.7736 39 1 -3.0446 4.0733 6.2270 40 1 -4.3949 3.1872 5.4808 41 1 -4.0737 6.2015 5.7362 42 1 -5.2989 5.1767 6.5138 43 1 -6.4855 5.7923 4.6067 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596978210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:26 Heat of formation + Delta-G solvation = -69.449011 kcal Electronic energy + Delta-G solvation = -26100.936160 eV Core-core repulsion = 22337.464561 eV Total energy + Delta-G solvation = -3763.471599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.94839 -41.15584 -39.25375 -37.48873 -36.80403 -35.57422 -34.30252 -33.08138 -32.81792 -30.71499 -29.94693 -28.79933 -25.36915 -25.03287 -24.49050 -23.08409 -22.28511 -21.37412 -20.48483 -19.83649 -18.66107 -18.24952 -18.00759 -17.61569 -16.99061 -16.64368 -16.42427 -15.97513 -15.90130 -15.54918 -15.04241 -14.95376 -14.65701 -14.56865 -14.38236 -13.90965 -13.79828 -13.56982 -13.48209 -13.26858 -12.99079 -12.88258 -12.63571 -12.39992 -12.22392 -12.10673 -12.06598 -11.66099 -11.34434 -11.13151 -11.07049 -10.86610 -10.54353 -10.13008 -9.82321 -9.70733 -9.07364 -8.17901 -6.32136 -0.22170 0.36216 1.45912 1.46082 1.56492 1.65021 1.78677 2.24981 2.30617 2.43103 2.83797 3.14452 3.42817 3.62942 3.65699 3.80074 4.04990 4.27448 4.37300 4.41948 4.45843 4.47861 4.54584 4.72200 4.74245 4.91363 4.95442 5.03812 5.07458 5.17929 5.22577 5.30698 5.38095 5.42675 5.45957 5.52822 5.61688 5.73314 5.86180 5.90156 6.00422 6.08362 6.17660 6.26906 6.77329 7.18283 7.24851 7.35938 7.70868 8.90447 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.002595 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.266569 B =10788.847691 C =11070.594127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C 0.295 3.705 4 H 0.002 0.998 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.261 1.261 13 N -0.711 5.711 14 C 0.690 3.310 15 O -0.611 6.611 16 N -0.674 5.674 17 C 0.198 3.802 18 C -0.157 4.157 19 C -0.050 4.050 20 C -0.184 4.184 21 C -0.022 4.022 22 C -0.145 4.145 23 C -0.098 4.098 24 C 0.108 3.892 25 N -0.715 5.715 26 C 0.563 3.437 27 O -0.592 6.592 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.023 0.977 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.425 0.575 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.173 0.827 39 H 0.135 0.865 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.129 0.871 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.506 7.179 23.990 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.152 4.152 3 C 0.191 3.809 4 H 0.020 0.980 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.185 1.185 13 N -0.364 5.364 14 C 0.391 3.609 15 O -0.490 6.490 16 N -0.323 5.323 17 C 0.101 3.899 18 C -0.178 4.178 19 C -0.070 4.070 20 C -0.188 4.188 21 C -0.023 4.023 22 C -0.165 4.165 23 C -0.135 4.135 24 C -0.015 4.015 25 N -0.367 5.367 26 C 0.352 3.648 27 O -0.474 6.474 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.264 0.736 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.191 0.809 39 H 0.153 0.847 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.147 0.853 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -11.250 7.057 22.454 26.087 hybrid contribution 1.093 0.023 -0.700 1.299 sum -10.157 7.079 21.754 25.030 Atomic orbital electron populations 1.21647 0.96957 0.99011 1.00274 1.21724 0.93756 0.99192 1.00570 1.18279 0.93617 0.88740 0.80287 0.97973 1.21554 0.91219 1.43173 1.02465 0.90681 1.25773 1.03157 0.94768 0.94748 1.70123 1.37385 1.44017 1.04053 0.85387 0.79256 0.78739 0.77280 1.19849 1.21639 1.18492 1.45410 1.13891 1.58529 1.18534 1.16223 0.83085 0.78720 0.82869 1.90912 1.52524 1.65648 1.39957 1.42429 1.12237 1.60134 1.17533 1.17917 0.84604 0.92594 0.94784 1.21204 0.96127 1.00609 0.99890 1.20952 0.93594 0.95938 0.96487 1.19739 0.95391 1.08473 0.95193 1.20115 0.92981 0.93826 0.95397 1.20930 0.94817 1.04090 0.96655 1.21017 0.99871 0.99726 0.92918 1.21663 0.93516 0.98204 0.88075 1.45719 1.17260 1.68172 1.05527 1.18382 0.86781 0.76343 0.83302 1.90782 1.58876 1.55176 1.42561 0.93692 0.93723 0.95815 0.92707 0.93183 0.92670 0.76101 0.73562 0.86584 0.86277 0.80937 0.84673 0.88591 0.90470 0.85281 0.75135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.52 71.98 0.61 -4.84 16 2 C -0.11 -5.40 5.49 30.60 0.17 -5.23 16 3 C 0.29 14.62 2.11 44.25 0.09 14.71 16 4 H 0.00 0.14 7.55 -2.39 -0.02 0.12 16 5 C -0.55 -27.90 8.67 25.60 0.22 -27.67 16 6 H 0.08 3.54 7.73 -2.91 -0.02 3.52 16 7 C 0.02 0.84 5.21 84.66 0.44 1.28 16 8 N -0.92 -52.61 11.98 21.45 0.26 -52.35 16 9 Si 0.97 41.27 29.54 68.60 2.03 43.30 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 N -0.71 -27.48 5.03 -461.44 -2.32 -29.80 16 14 C 0.69 26.22 6.98 179.05 1.25 27.46 16 15 O -0.61 -28.79 10.91 -3.97 -0.04 -28.83 16 16 N -0.67 -17.98 5.32 -317.10 -1.69 -19.66 16 17 C 0.20 5.33 6.29 38.39 0.24 5.58 16 18 C -0.16 -5.23 8.67 22.38 0.19 -5.03 16 19 C -0.05 -1.56 9.63 22.45 0.22 -1.35 16 20 C -0.18 -4.74 5.78 -20.10 -0.12 -4.86 16 21 C -0.02 -0.38 5.68 -19.68 -0.11 -0.50 16 22 C -0.14 -2.61 9.63 22.33 0.22 -2.40 16 23 C -0.10 -0.71 6.04 29.70 0.18 -0.53 16 24 C 0.11 0.63 7.04 86.36 0.61 1.24 16 25 N -0.71 -10.45 5.58 -467.64 -2.61 -13.06 16 26 C 0.56 14.55 7.78 86.72 0.67 15.22 16 27 O -0.59 -20.71 17.45 -3.99 -0.07 -20.78 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.94 5.64 -2.39 -0.01 1.93 16 30 H 0.02 1.16 7.86 -2.39 -0.02 1.14 16 31 H 0.05 2.94 6.63 -2.39 -0.02 2.92 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.40 12.55 8.55 -92.71 -0.79 11.76 16 35 H 0.43 7.52 8.84 -92.71 -0.82 6.70 16 36 H 0.12 4.64 6.24 -2.91 -0.02 4.62 16 37 H 0.12 3.92 7.84 -2.91 -0.02 3.90 16 38 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.14 0.06 8.07 -2.38 -0.02 0.04 16 40 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.13 -0.19 8.14 -2.39 -0.02 -0.20 16 43 H 0.41 4.69 8.92 -92.70 -0.83 3.86 16 Total: -1.00 -78.84 351.56 -0.91 -79.75 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -1.36 Total: 28.35 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 4.89 Total: 13.09 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -6.36 Total: -114.88 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.11 Total: -49.61 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -78.84 -0.91 -79.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596978210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.302 kcal (2) G-P(sol) polarization free energy of solvation -78.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds