Wall clock time and date at job start Tue Mar 31 2020 11:01:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52997 * 109.46975 * 2 1
4 4 H 1.08998 * 109.47197 * 305.22701 * 3 2 1
5 5 C 1.50701 * 109.46772 * 185.23163 * 3 2 1
6 6 H 1.07992 * 120.00347 * 244.95265 * 5 3 2
7 7 C 1.37885 * 119.99892 * 64.95109 * 5 3 2
8 8 N 1.31514 * 119.99940 * 6.45581 * 7 5 3
9 9 Si 1.86799 * 119.99960 * 186.45069 * 7 5 3
10 10 H 1.48503 * 109.47139 * 94.99441 * 9 7 5
11 11 H 1.48492 * 109.47430 * 214.99569 * 9 7 5
12 12 H 1.48500 * 109.47379 * 334.99763 * 9 7 5
13 13 N 1.46495 * 109.47542 * 65.23339 * 3 2 1
14 14 C 1.34776 * 120.00102 * 274.99789 * 13 3 2
15 15 O 1.21580 * 120.00121 * 0.02562 * 14 13 3
16 16 N 1.34776 * 120.00061 * 179.97438 * 14 13 3
17 17 C 1.39434 * 119.99681 * 185.11664 * 16 14 13
18 18 C 1.39150 * 119.86042 * 324.14300 * 17 16 14
19 19 C 1.37780 * 120.10686 * 180.02562 * 18 17 16
20 20 C 1.39435 * 119.67519 * 359.97438 * 19 18 17
21 21 C 1.39908 * 120.13560 * 359.97438 * 20 19 18
22 22 C 1.37482 * 119.91161 * 0.03195 * 21 20 19
23 23 C 1.50564 * 119.18874 * 180.02562 * 21 20 19
24 24 C 1.52694 * 109.90730 * 326.02288 * 23 21 20
25 25 N 1.46038 * 111.03024 * 51.12882 * 24 23 21
26 26 C 1.34797 * 121.20846 * 322.26083 * 25 24 23
27 27 O 1.21587 * 120.43078 * 182.71370 * 26 25 24
28 28 H 1.08990 * 109.47389 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.46904 * 300.00434 * 1 2 3
30 30 H 1.09000 * 109.46800 * 59.99677 * 1 2 3
31 31 H 1.08998 * 109.46904 * 239.99566 * 2 1 3
32 32 H 1.09003 * 109.46550 * 119.99871 * 2 1 3
33 33 H 0.96994 * 120.00087 * 179.97438 * 8 7 5
34 34 H 0.97003 * 120.00294 * 94.99765 * 13 3 2
35 35 H 0.96992 * 120.00081 * 5.11933 * 16 14 13
36 36 H 1.08000 * 119.94656 * 0.02562 * 18 17 16
37 37 H 1.08010 * 120.16223 * 180.25486 * 19 18 17
38 38 H 1.07995 * 120.05395 * 180.02562 * 22 21 20
39 39 H 1.09008 * 109.39926 * 205.89615 * 23 21 20
40 40 H 1.08996 * 109.33016 * 86.11637 * 23 21 20
41 41 H 1.08999 * 109.17136 * 290.73187 * 24 23 21
42 42 H 1.09002 * 109.12551 * 171.49790 * 24 23 21
43 43 H 0.97010 * 119.39736 * 142.27840 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6023 1.9826 -0.8394
5 6 3.5414 1.4444 -0.1296
6 1 4.1528 1.8151 0.6798
7 6 4.1346 0.9728 -1.2815
8 7 3.3921 0.6404 -2.3148
9 14 5.9928 0.8062 -1.3744
10 1 6.3832 -0.5838 -1.0269
11 1 6.4496 1.1189 -2.7523
12 1 6.6230 1.7511 -0.4177
13 7 1.6573 2.0958 1.2541
14 6 0.4405 2.6626 1.3747
15 8 -0.3398 2.6313 0.4428
16 7 0.0882 3.2632 2.5286
17 6 -1.2062 3.7553 2.6916
18 6 -1.8742 4.3196 1.6091
19 6 -3.1532 4.8078 1.7645
20 6 -3.7740 4.7330 3.0108
21 6 -3.1012 4.1643 4.0977
22 6 -1.8250 3.6790 3.9363
23 6 -3.7919 4.0939 5.4337
24 6 -4.6933 5.3126 5.6178
25 7 -5.5738 5.4918 4.4666
26 6 -5.1429 5.2478 3.2129
27 8 -5.8722 5.4486 2.2610
28 1 -0.3633 -1.0275 0.0005
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8901
33 1 3.8094 0.3090 -3.1253
34 1 2.2796 2.1205 1.9978
35 1 0.7351 3.3532 3.2457
36 1 -1.3894 4.3749 0.6457
37 1 -3.6741 5.2423 0.9240
38 1 -1.3037 3.2392 4.7736
39 1 -3.0446 4.0733 6.2270
40 1 -4.3949 3.1872 5.4808
41 1 -4.0737 6.2015 5.7362
42 1 -5.2989 5.1767 6.5138
43 1 -6.4855 5.7923 4.6067
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000596978210.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:26
Heat of formation + Delta-G solvation = -69.449011 kcal
Electronic energy + Delta-G solvation = -26100.936160 eV
Core-core repulsion = 22337.464561 eV
Total energy + Delta-G solvation = -3763.471599 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.94839 -41.15584 -39.25375 -37.48873 -36.80403 -35.57422 -34.30252 -33.08138
-32.81792 -30.71499 -29.94693 -28.79933 -25.36915 -25.03287 -24.49050 -23.08409
-22.28511 -21.37412 -20.48483 -19.83649 -18.66107 -18.24952 -18.00759 -17.61569
-16.99061 -16.64368 -16.42427 -15.97513 -15.90130 -15.54918 -15.04241 -14.95376
-14.65701 -14.56865 -14.38236 -13.90965 -13.79828 -13.56982 -13.48209 -13.26858
-12.99079 -12.88258 -12.63571 -12.39992 -12.22392 -12.10673 -12.06598 -11.66099
-11.34434 -11.13151 -11.07049 -10.86610 -10.54353 -10.13008 -9.82321 -9.70733
-9.07364 -8.17901 -6.32136 -0.22170 0.36216 1.45912 1.46082 1.56492
1.65021 1.78677 2.24981 2.30617 2.43103 2.83797 3.14452 3.42817
3.62942 3.65699 3.80074 4.04990 4.27448 4.37300 4.41948 4.45843
4.47861 4.54584 4.72200 4.74245 4.91363 4.95442 5.03812 5.07458
5.17929 5.22577 5.30698 5.38095 5.42675 5.45957 5.52822 5.61688
5.73314 5.86180 5.90156 6.00422 6.08362 6.17660 6.26906 6.77329
7.18283 7.24851 7.35938 7.70868 8.90447
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.030991 B = 0.002595 C = 0.002529
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 903.266569 B =10788.847691 C =11070.594127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.113 4.113
3 C 0.295 3.705
4 H 0.002 0.998
5 C -0.546 4.546
6 H 0.075 0.925
7 C 0.016 3.984
8 N -0.918 5.918
9 Si 0.968 3.032
10 H -0.273 1.273
11 H -0.290 1.290
12 H -0.261 1.261
13 N -0.711 5.711
14 C 0.690 3.310
15 O -0.611 6.611
16 N -0.674 5.674
17 C 0.198 3.802
18 C -0.157 4.157
19 C -0.050 4.050
20 C -0.184 4.184
21 C -0.022 4.022
22 C -0.145 4.145
23 C -0.098 4.098
24 C 0.108 3.892
25 N -0.715 5.715
26 C 0.563 3.437
27 O -0.592 6.592
28 H 0.044 0.956
29 H 0.044 0.956
30 H 0.023 0.977
31 H 0.054 0.946
32 H 0.049 0.951
33 H 0.264 0.736
34 H 0.404 0.596
35 H 0.425 0.575
36 H 0.116 0.884
37 H 0.119 0.881
38 H 0.173 0.827
39 H 0.135 0.865
40 H 0.096 0.904
41 H 0.077 0.923
42 H 0.129 0.871
43 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.506 7.179 23.990 27.156
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.152 4.152
3 C 0.191 3.809
4 H 0.020 0.980
5 C -0.584 4.584
6 H 0.093 0.907
7 C -0.184 4.184
8 N -0.556 5.556
9 Si 0.793 3.207
10 H -0.198 1.198
11 H -0.216 1.216
12 H -0.185 1.185
13 N -0.364 5.364
14 C 0.391 3.609
15 O -0.490 6.490
16 N -0.323 5.323
17 C 0.101 3.899
18 C -0.178 4.178
19 C -0.070 4.070
20 C -0.188 4.188
21 C -0.023 4.023
22 C -0.165 4.165
23 C -0.135 4.135
24 C -0.015 4.015
25 N -0.367 5.367
26 C 0.352 3.648
27 O -0.474 6.474
28 H 0.063 0.937
29 H 0.063 0.937
30 H 0.042 0.958
31 H 0.073 0.927
32 H 0.068 0.932
33 H 0.073 0.927
34 H 0.239 0.761
35 H 0.264 0.736
36 H 0.134 0.866
37 H 0.137 0.863
38 H 0.191 0.809
39 H 0.153 0.847
40 H 0.114 0.886
41 H 0.095 0.905
42 H 0.147 0.853
43 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges -11.250 7.057 22.454 26.087
hybrid contribution 1.093 0.023 -0.700 1.299
sum -10.157 7.079 21.754 25.030
Atomic orbital electron populations
1.21647 0.96957 0.99011 1.00274 1.21724 0.93756 0.99192 1.00570
1.18279 0.93617 0.88740 0.80287 0.97973 1.21554 0.91219 1.43173
1.02465 0.90681 1.25773 1.03157 0.94768 0.94748 1.70123 1.37385
1.44017 1.04053 0.85387 0.79256 0.78739 0.77280 1.19849 1.21639
1.18492 1.45410 1.13891 1.58529 1.18534 1.16223 0.83085 0.78720
0.82869 1.90912 1.52524 1.65648 1.39957 1.42429 1.12237 1.60134
1.17533 1.17917 0.84604 0.92594 0.94784 1.21204 0.96127 1.00609
0.99890 1.20952 0.93594 0.95938 0.96487 1.19739 0.95391 1.08473
0.95193 1.20115 0.92981 0.93826 0.95397 1.20930 0.94817 1.04090
0.96655 1.21017 0.99871 0.99726 0.92918 1.21663 0.93516 0.98204
0.88075 1.45719 1.17260 1.68172 1.05527 1.18382 0.86781 0.76343
0.83302 1.90782 1.58876 1.55176 1.42561 0.93692 0.93723 0.95815
0.92707 0.93183 0.92670 0.76101 0.73562 0.86584 0.86277 0.80937
0.84673 0.88591 0.90470 0.85281 0.75135
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.45 8.52 71.98 0.61 -4.84 16
2 C -0.11 -5.40 5.49 30.60 0.17 -5.23 16
3 C 0.29 14.62 2.11 44.25 0.09 14.71 16
4 H 0.00 0.14 7.55 -2.39 -0.02 0.12 16
5 C -0.55 -27.90 8.67 25.60 0.22 -27.67 16
6 H 0.08 3.54 7.73 -2.91 -0.02 3.52 16
7 C 0.02 0.84 5.21 84.66 0.44 1.28 16
8 N -0.92 -52.61 11.98 21.45 0.26 -52.35 16
9 Si 0.97 41.27 29.54 68.60 2.03 43.30 16
10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16
11 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16
12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16
13 N -0.71 -27.48 5.03 -461.44 -2.32 -29.80 16
14 C 0.69 26.22 6.98 179.05 1.25 27.46 16
15 O -0.61 -28.79 10.91 -3.97 -0.04 -28.83 16
16 N -0.67 -17.98 5.32 -317.10 -1.69 -19.66 16
17 C 0.20 5.33 6.29 38.39 0.24 5.58 16
18 C -0.16 -5.23 8.67 22.38 0.19 -5.03 16
19 C -0.05 -1.56 9.63 22.45 0.22 -1.35 16
20 C -0.18 -4.74 5.78 -20.10 -0.12 -4.86 16
21 C -0.02 -0.38 5.68 -19.68 -0.11 -0.50 16
22 C -0.14 -2.61 9.63 22.33 0.22 -2.40 16
23 C -0.10 -0.71 6.04 29.70 0.18 -0.53 16
24 C 0.11 0.63 7.04 86.36 0.61 1.24 16
25 N -0.71 -10.45 5.58 -467.64 -2.61 -13.06 16
26 C 0.56 14.55 7.78 86.72 0.67 15.22 16
27 O -0.59 -20.71 17.45 -3.99 -0.07 -20.78 16
28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
29 H 0.04 1.94 5.64 -2.39 -0.01 1.93 16
30 H 0.02 1.16 7.86 -2.39 -0.02 1.14 16
31 H 0.05 2.94 6.63 -2.39 -0.02 2.92 16
32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16
33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16
34 H 0.40 12.55 8.55 -92.71 -0.79 11.76 16
35 H 0.43 7.52 8.84 -92.71 -0.82 6.70 16
36 H 0.12 4.64 6.24 -2.91 -0.02 4.62 16
37 H 0.12 3.92 7.84 -2.91 -0.02 3.90 16
38 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16
39 H 0.14 0.06 8.07 -2.38 -0.02 0.04 16
40 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16
41 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16
42 H 0.13 -0.19 8.14 -2.39 -0.02 -0.20 16
43 H 0.41 4.69 8.92 -92.70 -0.83 3.86 16
Total: -1.00 -78.84 351.56 -0.91 -79.75
By element:
Atomic # 1 Polarization: 29.71 SS G_CDS: -1.36 Total: 28.35 kcal
Atomic # 6 Polarization: 8.20 SS G_CDS: 4.89 Total: 13.09 kcal
Atomic # 7 Polarization: -108.52 SS G_CDS: -6.36 Total: -114.88 kcal
Atomic # 8 Polarization: -49.50 SS G_CDS: -0.11 Total: -49.61 kcal
Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal
Total: -78.84 -0.91 -79.75 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596978210.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.302 kcal
(2) G-P(sol) polarization free energy of solvation -78.837 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.535 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.751 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds