Wall clock time and date at job start Tue Mar 31 2020 11:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47041 * 2 1 4 4 H 1.09001 * 109.47397 * 54.23491 * 3 2 1 5 5 C 1.50698 * 109.47377 * 174.23867 * 3 2 1 6 6 H 1.07999 * 120.00319 * 114.37787 * 5 3 2 7 7 C 1.37885 * 120.00059 * 294.37758 * 5 3 2 8 8 N 1.31509 * 120.00067 * 155.95236 * 7 5 3 9 9 Si 1.86804 * 119.99760 * 335.95187 * 7 5 3 10 10 H 1.48493 * 109.46935 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.46995 * 300.00008 * 9 7 5 12 12 H 1.48497 * 109.47103 * 59.99627 * 9 7 5 13 13 N 1.46501 * 109.47383 * 294.23905 * 3 2 1 14 14 C 1.34781 * 120.00022 * 84.99810 * 13 3 2 15 15 O 1.21574 * 119.99851 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99631 * 180.02562 * 14 13 3 17 17 C 1.39435 * 119.99513 * 185.66803 * 16 14 13 18 18 C 1.39152 * 119.86138 * 32.02740 * 17 16 14 19 19 C 1.37773 * 120.11302 * 179.76248 * 18 17 16 20 20 C 1.39440 * 119.66999 * 0.51158 * 19 18 17 21 21 C 1.39909 * 120.13457 * 359.72281 * 20 19 18 22 22 C 1.37477 * 119.91388 * 0.03960 * 21 20 19 23 23 C 1.50568 * 119.19371 * 180.10898 * 21 20 19 24 24 C 1.52704 * 109.89902 * 325.96536 * 23 21 20 25 25 N 1.46033 * 111.03184 * 51.12409 * 24 23 21 26 26 C 1.34790 * 121.21724 * 322.29744 * 25 24 23 27 27 O 1.21595 * 120.43127 * 182.70226 * 26 25 24 28 28 H 1.09000 * 109.46740 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46752 * 299.99753 * 1 2 3 30 30 H 1.08996 * 109.46939 * 59.99906 * 1 2 3 31 31 H 1.09000 * 109.47272 * 240.00203 * 2 1 3 32 32 H 1.09001 * 109.47390 * 120.00011 * 2 1 3 33 33 H 0.97000 * 120.00226 * 354.92363 * 8 7 5 34 34 H 0.97005 * 119.99821 * 265.00161 * 13 3 2 35 35 H 0.96998 * 120.00265 * 5.67260 * 16 14 13 36 36 H 1.08005 * 119.94200 * 0.02562 * 18 17 16 37 37 H 1.08004 * 120.16888 * 180.29700 * 19 18 17 38 38 H 1.08004 * 120.05651 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.40218 * 86.09769 * 23 21 20 40 40 H 1.09003 * 109.39872 * 205.83783 * 23 21 20 41 41 H 1.09001 * 109.16268 * 290.73187 * 24 23 21 42 42 H 1.08995 * 109.12610 * 171.50037 * 24 23 21 43 43 H 0.97005 * 119.38970 * 142.31538 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5948 1.9852 0.8339 5 6 3.5402 1.4449 0.1426 6 1 4.1590 1.8031 -0.6668 7 6 4.1229 0.9898 1.3065 8 7 5.3600 0.5441 1.2919 9 14 3.1548 1.0065 2.9041 10 1 4.0005 0.4708 4.0008 11 1 2.7530 2.3998 3.2249 12 1 1.9416 0.1631 2.7565 13 7 1.6682 2.0919 -1.2594 14 6 0.4524 2.6583 -1.3923 15 8 -0.3359 2.6297 -0.4672 16 7 0.1102 3.2553 -2.5512 17 6 -1.0986 3.9432 -2.6506 18 6 -1.6211 4.5905 -1.5351 19 6 -2.8126 5.2759 -1.6287 20 6 -3.4967 5.3083 -2.8434 21 6 -2.9722 4.6527 -3.9626 22 6 -1.7803 3.9747 -3.8639 23 6 -3.7273 4.7035 -5.2642 24 6 -5.2301 4.7144 -4.9933 25 7 -5.5806 5.7503 -4.0254 26 6 -4.7793 6.0270 -2.9774 27 8 -5.1084 6.8582 -2.1532 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8376 0.4663 0.4513 34 1 2.2970 2.1143 -1.9977 35 1 0.7047 3.2064 -3.3160 36 1 -1.0896 4.5592 -0.5954 37 1 -3.2166 5.7827 -0.7647 38 1 -1.3736 3.4674 -4.7263 39 1 -3.4509 5.6066 -5.8081 40 1 -3.4740 3.8293 -5.8641 41 1 -5.5301 3.7425 -4.6016 42 1 -5.7599 4.9030 -5.9269 43 1 -6.4054 6.2481 -4.1386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596978211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:31 Heat of formation + Delta-G solvation = -44.396085 kcal Electronic energy + Delta-G solvation = -26189.974891 eV Core-core repulsion = 22427.589669 eV Total energy + Delta-G solvation = -3762.385222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96186 -40.03663 -38.18274 -36.51202 -35.51814 -34.36251 -32.59049 -32.20734 -31.50425 -29.68326 -29.19206 -27.17465 -24.35841 -23.89494 -22.43552 -22.15286 -21.09583 -19.77451 -19.54126 -18.65246 -17.70708 -17.43855 -17.15368 -16.69246 -15.78359 -15.48299 -15.08384 -15.00017 -14.49473 -14.12039 -13.99066 -13.77887 -13.50592 -13.35119 -13.12236 -12.81064 -12.65408 -12.61166 -12.41439 -12.21102 -11.82881 -11.74930 -11.23746 -10.87583 -10.74626 -10.48222 -10.32294 -10.15488 -9.89503 -9.77757 -9.61136 -9.40318 -9.20365 -8.92310 -8.34204 -8.30115 -7.97223 -6.65897 -4.26658 0.76171 1.27938 2.65150 2.92650 2.99571 3.38274 3.44079 3.49422 3.59368 3.85608 4.25511 4.39898 4.40408 4.42331 4.62066 4.75460 4.81719 4.98988 5.04738 5.13812 5.31222 5.37005 5.49793 5.53689 5.85880 6.01999 6.04532 6.06759 6.20393 6.25172 6.27258 6.47403 6.60505 6.61936 6.75528 6.88160 6.94168 6.95013 7.00017 7.08704 7.34273 7.41346 7.70125 8.01985 8.19238 8.49578 8.66620 8.98618 9.39114 10.72676 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.002805 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.164838 B = 9980.698680 C =10325.789923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.266 3.734 4 H 0.043 0.957 5 C -0.628 4.628 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.887 5.887 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.272 1.272 13 N -0.709 5.709 14 C 0.691 3.309 15 O -0.572 6.572 16 N -0.693 5.693 17 C 0.218 3.782 18 C -0.137 4.137 19 C -0.030 4.030 20 C -0.174 4.174 21 C -0.031 4.031 22 C -0.165 4.165 23 C -0.099 4.099 24 C 0.116 3.884 25 N -0.731 5.731 26 C 0.571 3.429 27 O -0.541 6.541 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.271 0.729 34 H 0.391 0.609 35 H 0.405 0.595 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 6.103 -16.513 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.163 3.837 4 H 0.060 0.940 5 C -0.665 4.665 6 H 0.081 0.919 7 C -0.160 4.160 8 N -0.519 5.519 9 Si 0.857 3.143 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.360 5.360 14 C 0.392 3.608 15 O -0.450 6.450 16 N -0.340 5.340 17 C 0.120 3.880 18 C -0.158 4.158 19 C -0.050 4.050 20 C -0.178 4.178 21 C -0.032 4.032 22 C -0.186 4.186 23 C -0.137 4.137 24 C -0.009 4.009 25 N -0.384 5.384 26 C 0.360 3.640 27 O -0.419 6.419 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.223 0.777 35 H 0.241 0.759 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -17.585 5.992 -13.500 22.965 hybrid contribution 0.325 0.321 -2.637 2.676 sum -17.260 6.312 -16.137 24.457 Atomic orbital electron populations 1.21873 0.97289 0.98800 1.02021 1.22279 0.93797 0.99747 1.01476 1.18980 0.95682 0.88239 0.80838 0.93976 1.21988 0.89579 1.49970 1.04970 0.91939 1.25617 0.96697 0.91715 1.01946 1.70872 1.12491 1.37719 1.30780 0.84223 0.75967 0.77763 0.76354 1.20828 1.20577 1.19770 1.45613 1.12756 1.58637 1.19001 1.16136 0.83669 0.78777 0.82232 1.90913 1.50802 1.64210 1.39042 1.42855 1.20315 1.55648 1.15167 1.17729 0.85721 0.90359 0.94216 1.21319 0.97395 0.97319 0.99753 1.21023 0.92894 0.94644 0.96397 1.19544 0.97144 1.05786 0.95370 1.19589 0.94276 0.94979 0.94355 1.20523 0.95768 1.04803 0.97544 1.20813 0.93766 1.04254 0.94850 1.21274 0.95347 0.91677 0.92609 1.45694 1.25364 1.40231 1.27100 1.18251 0.84017 0.81562 0.80182 1.90811 1.75065 1.34519 1.41492 0.95186 0.92944 0.93342 0.93200 0.91673 0.91884 0.77651 0.75942 0.83386 0.84617 0.85189 0.89489 0.88578 0.91432 0.89437 0.76186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.53 37.16 0.32 -2.52 16 2 C -0.13 -2.91 5.34 -26.73 -0.14 -3.05 16 3 C 0.27 6.09 1.83 -69.09 -0.13 5.96 16 4 H 0.04 1.06 6.14 -51.93 -0.32 0.74 16 5 C -0.63 -16.33 8.94 -34.44 -0.31 -16.64 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.28 16 7 C 0.05 1.32 5.19 -17.82 -0.09 1.23 16 8 N -0.89 -25.66 13.70 55.43 0.76 -24.90 16 9 Si 1.03 24.50 26.48 -169.99 -4.50 20.00 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.12 6.19 56.52 0.35 -5.77 16 13 N -0.71 -13.35 5.03 -59.82 -0.30 -13.65 16 14 C 0.69 12.35 6.90 -86.91 -0.60 11.76 16 15 O -0.57 -11.98 11.07 5.30 0.06 -11.92 16 16 N -0.69 -9.31 5.33 -14.20 -0.08 -9.38 16 17 C 0.22 2.91 6.30 -83.70 -0.53 2.39 16 18 C -0.14 -2.05 8.63 -39.41 -0.34 -2.39 16 19 C -0.03 -0.42 9.63 -39.30 -0.38 -0.80 16 20 C -0.17 -2.20 5.78 -104.99 -0.61 -2.81 16 21 C -0.03 -0.31 5.68 -104.34 -0.59 -0.90 16 22 C -0.17 -1.72 9.62 -39.50 -0.38 -2.10 16 23 C -0.10 -0.60 6.04 -28.10 -0.17 -0.77 16 24 C 0.12 0.63 7.04 -4.45 -0.03 0.60 16 25 N -0.73 -6.15 5.58 -61.79 -0.34 -6.50 16 26 C 0.57 7.26 7.78 -12.42 -0.10 7.16 16 27 O -0.54 -8.79 17.45 5.28 0.09 -8.70 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.10 7.89 -51.93 -0.41 0.69 16 30 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.49 5.55 -51.93 -0.29 1.20 16 33 H 0.27 7.73 8.73 -40.82 -0.36 7.37 16 34 H 0.39 6.42 8.55 -40.82 -0.35 6.07 16 35 H 0.41 4.04 8.83 -40.82 -0.36 3.68 16 36 H 0.15 2.52 6.30 -52.48 -0.33 2.19 16 37 H 0.14 1.87 7.84 -52.48 -0.41 1.45 16 38 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.38 8.07 -51.93 -0.42 -0.04 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.40 2.70 8.92 -40.82 -0.36 2.33 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -33.33 347.43 -8.85 -42.19 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.70 Total: 10.50 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -4.08 Total: -2.89 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.04 Total: -54.42 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.15 Total: -20.62 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.50 Total: 20.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.33 -8.85 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596978211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.208 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds