Wall clock time and date at job start Tue Mar 31 2020 11:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47041 * 2 1 4 4 H 1.09001 * 109.47397 * 54.23491 * 3 2 1 5 5 C 1.50698 * 109.47377 * 174.23867 * 3 2 1 6 6 H 1.07999 * 120.00319 * 114.37787 * 5 3 2 7 7 C 1.37885 * 120.00059 * 294.37758 * 5 3 2 8 8 N 1.31509 * 120.00067 * 155.95236 * 7 5 3 9 9 Si 1.86804 * 119.99760 * 335.95187 * 7 5 3 10 10 H 1.48493 * 109.46935 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.46995 * 300.00008 * 9 7 5 12 12 H 1.48497 * 109.47103 * 59.99627 * 9 7 5 13 13 N 1.46501 * 109.47383 * 294.23905 * 3 2 1 14 14 C 1.34781 * 120.00022 * 84.99810 * 13 3 2 15 15 O 1.21574 * 119.99851 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99631 * 180.02562 * 14 13 3 17 17 C 1.39435 * 119.99513 * 185.66803 * 16 14 13 18 18 C 1.39152 * 119.86138 * 32.02740 * 17 16 14 19 19 C 1.37773 * 120.11302 * 179.76248 * 18 17 16 20 20 C 1.39440 * 119.66999 * 0.51158 * 19 18 17 21 21 C 1.39909 * 120.13457 * 359.72281 * 20 19 18 22 22 C 1.37477 * 119.91388 * 0.03960 * 21 20 19 23 23 C 1.50568 * 119.19371 * 180.10898 * 21 20 19 24 24 C 1.52704 * 109.89902 * 325.96536 * 23 21 20 25 25 N 1.46033 * 111.03184 * 51.12409 * 24 23 21 26 26 C 1.34790 * 121.21724 * 322.29744 * 25 24 23 27 27 O 1.21595 * 120.43127 * 182.70226 * 26 25 24 28 28 H 1.09000 * 109.46740 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46752 * 299.99753 * 1 2 3 30 30 H 1.08996 * 109.46939 * 59.99906 * 1 2 3 31 31 H 1.09000 * 109.47272 * 240.00203 * 2 1 3 32 32 H 1.09001 * 109.47390 * 120.00011 * 2 1 3 33 33 H 0.97000 * 120.00226 * 354.92363 * 8 7 5 34 34 H 0.97005 * 119.99821 * 265.00161 * 13 3 2 35 35 H 0.96998 * 120.00265 * 5.67260 * 16 14 13 36 36 H 1.08005 * 119.94200 * 0.02562 * 18 17 16 37 37 H 1.08004 * 120.16888 * 180.29700 * 19 18 17 38 38 H 1.08004 * 120.05651 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.40218 * 86.09769 * 23 21 20 40 40 H 1.09003 * 109.39872 * 205.83783 * 23 21 20 41 41 H 1.09001 * 109.16268 * 290.73187 * 24 23 21 42 42 H 1.08995 * 109.12610 * 171.50037 * 24 23 21 43 43 H 0.97005 * 119.38970 * 142.31538 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5948 1.9852 0.8339 5 6 3.5402 1.4449 0.1426 6 1 4.1590 1.8031 -0.6668 7 6 4.1229 0.9898 1.3065 8 7 5.3600 0.5441 1.2919 9 14 3.1548 1.0065 2.9041 10 1 4.0005 0.4708 4.0008 11 1 2.7530 2.3998 3.2249 12 1 1.9416 0.1631 2.7565 13 7 1.6682 2.0919 -1.2594 14 6 0.4524 2.6583 -1.3923 15 8 -0.3359 2.6297 -0.4672 16 7 0.1102 3.2553 -2.5512 17 6 -1.0986 3.9432 -2.6506 18 6 -1.6211 4.5905 -1.5351 19 6 -2.8126 5.2759 -1.6287 20 6 -3.4967 5.3083 -2.8434 21 6 -2.9722 4.6527 -3.9626 22 6 -1.7803 3.9747 -3.8639 23 6 -3.7273 4.7035 -5.2642 24 6 -5.2301 4.7144 -4.9933 25 7 -5.5806 5.7503 -4.0254 26 6 -4.7793 6.0270 -2.9774 27 8 -5.1084 6.8582 -2.1532 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8376 0.4663 0.4513 34 1 2.2970 2.1143 -1.9977 35 1 0.7047 3.2064 -3.3160 36 1 -1.0896 4.5592 -0.5954 37 1 -3.2166 5.7827 -0.7647 38 1 -1.3736 3.4674 -4.7263 39 1 -3.4509 5.6066 -5.8081 40 1 -3.4740 3.8293 -5.8641 41 1 -5.5301 3.7425 -4.6016 42 1 -5.7599 4.9030 -5.9269 43 1 -6.4054 6.2481 -4.1386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596978211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:30 Heat of formation + Delta-G solvation = -70.065653 kcal Electronic energy + Delta-G solvation = -26191.088007 eV Core-core repulsion = 22427.589669 eV Total energy + Delta-G solvation = -3763.498338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.00402 -41.21580 -39.30586 -37.57495 -36.88119 -35.63207 -34.50608 -33.19198 -32.99688 -30.76512 -29.97146 -28.97093 -25.13919 -25.01516 -24.18461 -23.16812 -22.35921 -21.42260 -20.56658 -20.14983 -19.14624 -18.47676 -18.19014 -17.75402 -17.07747 -16.55738 -16.38598 -15.94734 -15.78735 -15.43607 -15.12509 -14.95519 -14.73675 -14.54778 -14.43790 -14.32838 -14.01838 -13.81473 -13.62800 -13.55104 -13.06390 -12.65799 -12.51887 -12.42847 -12.31758 -12.08728 -11.78881 -11.62422 -11.36829 -11.28375 -11.18264 -10.91255 -10.43968 -10.14591 -9.91331 -9.79508 -9.09490 -8.80679 -6.41309 -0.23699 0.34149 1.47177 1.49715 1.56882 1.69583 1.74750 2.16382 2.30708 2.42234 2.82373 2.94815 3.29569 3.60745 3.62918 3.77461 4.02618 4.24220 4.31667 4.32924 4.39914 4.40809 4.42390 4.54619 4.70354 4.83591 4.89074 4.94611 5.02729 5.08981 5.15781 5.21049 5.22830 5.30223 5.36466 5.42910 5.56190 5.62059 5.66931 5.87028 5.97853 6.02958 6.12209 6.16308 6.54861 7.10595 7.17087 7.27747 7.57284 8.57014 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.002805 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.164838 B = 9980.698680 C =10325.789923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.272 3.728 4 H 0.021 0.979 5 C -0.622 4.622 6 H 0.045 0.955 7 C 0.007 3.993 8 N -0.918 5.918 9 Si 1.061 2.939 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.252 1.252 13 N -0.710 5.710 14 C 0.693 3.307 15 O -0.604 6.604 16 N -0.674 5.674 17 C 0.201 3.799 18 C -0.159 4.159 19 C -0.046 4.046 20 C -0.186 4.186 21 C -0.019 4.019 22 C -0.148 4.148 23 C -0.098 4.098 24 C 0.107 3.893 25 N -0.715 5.715 26 C 0.563 3.437 27 O -0.591 6.591 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.262 0.738 34 H 0.403 0.597 35 H 0.425 0.575 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.172 0.828 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.071 0.929 42 H 0.130 0.870 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.224 5.408 -20.112 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.167 3.833 4 H 0.039 0.961 5 C -0.659 4.659 6 H 0.063 0.937 7 C -0.196 4.196 8 N -0.552 5.552 9 Si 0.883 3.117 10 H -0.208 1.208 11 H -0.202 1.202 12 H -0.177 1.177 13 N -0.362 5.362 14 C 0.394 3.606 15 O -0.484 6.484 16 N -0.322 5.322 17 C 0.104 3.896 18 C -0.180 4.180 19 C -0.066 4.066 20 C -0.190 4.190 21 C -0.021 4.021 22 C -0.168 4.168 23 C -0.135 4.135 24 C -0.016 4.016 25 N -0.367 5.367 26 C 0.352 3.648 27 O -0.473 6.473 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.238 0.762 35 H 0.263 0.737 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.189 0.811 39 H 0.120 0.880 40 H 0.150 0.850 41 H 0.090 0.910 42 H 0.148 0.852 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -19.676 5.299 -17.209 26.672 hybrid contribution 0.894 0.610 -1.667 1.988 sum -18.782 5.909 -18.877 27.277 Atomic orbital electron populations 1.21733 0.95655 1.00091 1.01295 1.22158 0.95122 0.98419 1.01156 1.18627 0.93361 0.89249 0.82047 0.96128 1.22161 0.91323 1.48385 1.04063 0.93727 1.26591 0.96824 0.91475 1.04666 1.70956 1.13608 1.40281 1.30332 0.83810 0.75782 0.78300 0.73773 1.20761 1.20215 1.17694 1.45261 1.13700 1.59063 1.18172 1.16152 0.82860 0.78583 0.83006 1.90906 1.51608 1.65229 1.40630 1.42484 1.20799 1.54648 1.14303 1.17911 0.85923 0.90760 0.95015 1.21090 0.98048 0.99377 0.99504 1.20936 0.93165 0.95293 0.97175 1.19732 0.97348 1.06228 0.95719 1.20108 0.94036 0.92652 0.95291 1.20893 0.95034 1.03700 0.97201 1.21013 0.93225 1.06632 0.92623 1.21652 0.95686 0.90802 0.93454 1.45711 1.24770 1.40180 1.26032 1.18378 0.84502 0.81150 0.80731 1.90782 1.76135 1.36784 1.43592 0.92769 0.94470 0.93293 0.92506 0.92991 0.92835 0.76246 0.73656 0.86547 0.86097 0.81084 0.87962 0.85048 0.91028 0.85203 0.75119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 8.53 71.98 0.61 -4.40 16 2 C -0.13 -5.50 5.34 30.59 0.16 -5.33 16 3 C 0.27 12.44 1.83 44.24 0.08 12.53 16 4 H 0.02 1.05 6.14 -2.39 -0.01 1.04 16 5 C -0.62 -32.70 8.94 25.60 0.23 -32.47 16 6 H 0.04 2.46 7.96 -2.91 -0.02 2.44 16 7 C 0.01 0.41 5.19 84.66 0.44 0.84 16 8 N -0.92 -54.09 13.70 21.45 0.29 -53.80 16 9 Si 1.06 49.88 26.48 68.60 1.82 51.70 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.25 -11.00 6.19 99.48 0.62 -10.39 16 13 N -0.71 -26.32 5.03 -461.43 -2.32 -28.65 16 14 C 0.69 24.44 6.90 179.05 1.23 25.68 16 15 O -0.60 -25.65 11.07 -3.95 -0.04 -25.69 16 16 N -0.67 -17.00 5.33 -317.10 -1.69 -18.68 16 17 C 0.20 5.10 6.30 38.39 0.24 5.34 16 18 C -0.16 -4.96 8.63 22.38 0.19 -4.76 16 19 C -0.05 -1.35 9.63 22.45 0.22 -1.14 16 20 C -0.19 -4.56 5.78 -20.10 -0.12 -4.68 16 21 C -0.02 -0.32 5.68 -19.68 -0.11 -0.44 16 22 C -0.15 -2.51 9.62 22.32 0.21 -2.30 16 23 C -0.10 -0.64 6.04 29.71 0.18 -0.46 16 24 C 0.11 0.64 7.04 86.37 0.61 1.24 16 25 N -0.72 -10.11 5.58 -467.64 -2.61 -12.72 16 26 C 0.56 13.96 7.78 86.72 0.67 14.64 16 27 O -0.59 -19.83 17.45 -4.01 -0.07 -19.90 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.52 7.89 -2.39 -0.02 1.50 16 30 H 0.05 1.86 5.63 -2.39 -0.01 1.85 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.05 2.33 5.55 -2.39 -0.01 2.32 16 33 H 0.26 15.37 8.73 -92.71 -0.81 14.56 16 34 H 0.40 12.83 8.55 -92.70 -0.79 12.04 16 35 H 0.42 7.27 8.83 -92.71 -0.82 6.45 16 36 H 0.12 4.31 6.30 -2.91 -0.02 4.30 16 37 H 0.12 3.74 7.84 -2.91 -0.02 3.72 16 38 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.13 0.07 8.07 -2.39 -0.02 0.05 16 41 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.41 4.48 8.92 -92.70 -0.83 3.66 16 Total: -1.00 -76.90 347.43 -1.24 -78.15 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -1.48 Total: 25.29 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 4.86 Total: 4.30 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -6.33 Total: -113.85 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.11 Total: -45.59 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 1.82 Total: 51.70 kcal Total: -76.90 -1.24 -78.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596978211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.082 kcal (2) G-P(sol) polarization free energy of solvation -76.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds