Wall clock time and date at job start Tue Mar 31 2020 11:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46695 * 2 1 4 4 N 1.46500 * 109.47085 * 119.99599 * 2 1 3 5 5 C 1.36247 * 126.40262 * 299.99952 * 4 2 1 6 6 O 1.35205 * 125.01134 * 0.02562 * 5 4 2 7 7 N 1.30915 * 109.97757 * 179.97438 * 5 4 2 8 8 C 1.35557 * 109.71307 * 0.02562 * 7 5 4 9 9 C 1.40015 * 133.26985 * 180.02562 * 8 7 5 10 10 C 1.36201 * 120.08896 * 180.02562 * 9 8 7 11 11 C 1.40157 * 120.49317 * 359.97377 * 10 9 8 12 12 C 1.47506 * 119.95008 * 180.02562 * 11 10 9 13 13 O 1.21594 * 120.00165 * 180.02562 * 12 11 10 14 14 N 1.34784 * 119.99772 * 359.97438 * 12 11 10 15 15 C 1.46502 * 119.99834 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.46977 * 180.02562 * 15 14 12 17 17 C 1.50704 * 109.46916 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00250 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99832 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00115 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99906 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47324 * 90.00103 * 21 19 17 23 23 H 1.48509 * 109.46994 * 210.00124 * 21 19 17 24 24 H 1.48495 * 109.47394 * 329.99748 * 21 19 17 25 25 C 1.39531 * 120.10179 * 0.23538 * 11 10 9 26 26 C 1.38214 * 119.59164 * 359.55228 * 25 11 10 27 27 H 1.09004 * 109.46897 * 299.99681 * 1 2 3 28 28 H 1.08991 * 109.47500 * 60.00317 * 1 2 3 29 29 H 1.09000 * 109.46506 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47046 * 240.00056 * 2 1 3 31 31 H 1.08996 * 109.47328 * 60.00229 * 3 2 1 32 32 H 1.09001 * 109.46734 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47177 * 299.99485 * 3 2 1 34 34 H 0.96697 * 114.00453 * 89.99593 * 6 5 4 35 35 H 1.08005 * 119.95638 * 359.97438 * 9 8 7 36 36 H 1.08004 * 119.75835 * 180.02562 * 10 9 8 37 37 H 0.96997 * 119.99771 * 0.02562 * 14 12 11 38 38 H 1.09002 * 109.47361 * 300.00587 * 15 14 12 39 39 H 1.09005 * 109.46700 * 60.00352 * 15 14 12 40 40 H 1.08994 * 109.47538 * 300.00650 * 16 15 14 41 41 H 1.08998 * 109.46674 * 60.00752 * 16 15 14 42 42 H 0.97002 * 120.00203 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.20230 * 179.68306 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7710 -0.3405 2.4895 6 8 1.0228 0.7167 2.8775 7 7 2.3636 -1.1795 3.3011 8 6 3.0276 -2.1183 2.5833 9 6 3.8086 -3.2243 2.9400 10 6 4.3639 -4.0080 1.9743 11 6 4.1602 -3.7177 0.6184 12 6 4.7668 -4.5748 -0.4175 13 8 4.5910 -4.3235 -1.5942 14 7 5.5168 -5.6360 -0.0598 15 6 6.1198 -6.4870 -1.0886 16 6 6.9133 -7.6112 -0.4199 17 6 7.5341 -8.4862 -1.4782 18 1 7.3779 -8.2631 -2.5232 19 6 8.3006 -9.5724 -1.1123 20 7 8.8427 -10.3357 -2.0358 21 14 8.5689 -9.9596 0.6953 22 1 7.4966 -10.8703 1.1710 23 1 9.8895 -10.6160 0.8702 24 1 8.5340 -8.7005 1.4818 25 6 3.3880 -2.6165 0.2469 26 6 2.8189 -1.8212 1.2236 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 0.0841 0.5141 2.9904 35 1 3.9717 -3.4559 3.9823 36 1 4.9651 -4.8601 2.2555 37 1 5.6574 -5.8362 0.8788 38 1 5.3347 -6.9170 -1.7105 39 1 6.7880 -5.8893 -1.7087 40 1 7.6983 -7.1816 0.2023 41 1 6.2447 -8.2088 0.1998 42 1 9.3817 -11.1000 -1.7784 43 1 3.2341 -2.3883 -0.7975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597495885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:20 Heat of formation + Delta-G solvation = -33.185763 kcal Electronic energy + Delta-G solvation = -25514.246250 eV Core-core repulsion = 21752.347144 eV Total energy + Delta-G solvation = -3761.899106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.41688 -40.95779 -39.12612 -37.59250 -36.81971 -36.63442 -34.79902 -33.01463 -32.26803 -30.81411 -30.12070 -28.30888 -26.93999 -24.65048 -24.11925 -23.84794 -22.62171 -21.74898 -21.25464 -19.43216 -19.08656 -18.84815 -18.11331 -17.59216 -17.03655 -16.80609 -16.50000 -16.21091 -15.71788 -15.43691 -15.30384 -15.05257 -14.95629 -14.86484 -14.53977 -14.24471 -14.19156 -13.63717 -13.34308 -13.22594 -13.07716 -13.04463 -12.68519 -12.53703 -12.34693 -12.19352 -12.12862 -12.04309 -11.73328 -11.53433 -11.49452 -11.11605 -11.02965 -10.76215 -10.11482 -9.49203 -9.23151 -8.27504 -6.34686 -0.55754 0.28042 1.06892 1.24987 1.42280 1.44845 1.56022 1.95230 2.18845 2.39684 2.54157 2.80253 3.07840 3.22124 3.46654 3.67940 3.83894 3.86719 3.98978 4.11812 4.14158 4.20227 4.34358 4.45602 4.50490 4.57892 4.59686 4.72551 4.77825 4.84409 4.94838 5.07491 5.12535 5.15228 5.17699 5.25065 5.34160 5.42455 5.44060 5.59833 5.64836 5.66778 6.24460 6.51299 6.57194 6.60230 6.73547 7.20224 7.29885 8.89179 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.002403 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.539975 B =11651.505385 C =12460.107862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 C -0.160 4.160 4 N -0.478 5.478 5 C 0.472 3.528 6 O -0.437 6.437 7 N -0.525 5.525 8 C 0.068 3.932 9 C -0.072 4.072 10 C -0.083 4.083 11 C -0.128 4.128 12 C 0.556 3.444 13 O -0.586 6.586 14 N -0.707 5.707 15 C 0.144 3.856 16 C -0.014 4.014 17 C -0.538 4.538 18 H 0.029 0.971 19 C 0.003 3.997 20 N -0.951 5.951 21 Si 0.958 3.042 22 H -0.265 1.265 23 H -0.289 1.289 24 H -0.234 1.234 25 C -0.041 4.041 26 C 0.030 3.970 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.430 0.570 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.414 0.586 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.267 0.733 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.903 24.755 12.901 34.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 C -0.218 4.218 4 N -0.180 5.180 5 C 0.169 3.831 6 O -0.243 6.243 7 N -0.257 5.257 8 C -0.052 4.052 9 C -0.091 4.091 10 C -0.104 4.104 11 C -0.133 4.133 12 C 0.344 3.656 13 O -0.468 6.468 14 N -0.359 5.359 15 C 0.021 3.979 16 C -0.052 4.052 17 C -0.576 4.576 18 H 0.047 0.953 19 C -0.194 4.194 20 N -0.592 5.592 21 Si 0.780 3.220 22 H -0.190 1.190 23 H -0.215 1.215 24 H -0.156 1.156 25 C -0.062 4.062 26 C -0.078 4.078 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.293 0.707 35 H 0.177 0.823 36 H 0.179 0.821 37 H 0.252 0.748 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.566 25.293 12.806 34.446 hybrid contribution 0.069 -0.815 -0.555 0.988 sum -19.497 24.478 12.251 33.607 Atomic orbital electron populations 1.22194 0.91148 1.03185 1.05218 1.21811 0.97051 0.94312 0.84924 1.22190 1.01142 0.93545 1.04898 1.46183 1.41623 1.22430 1.07749 1.20423 0.94989 0.88427 0.79224 1.84771 1.25999 1.26566 1.86962 1.70618 1.17306 1.06051 1.31728 1.19301 1.00311 0.96831 0.88745 1.20146 0.95772 0.91834 1.01393 1.20983 0.99246 1.00272 0.89927 1.19480 1.02666 0.97353 0.93779 1.18454 0.78256 0.80680 0.88165 1.90742 1.62698 1.72861 1.20539 1.45947 1.50679 1.27856 1.11392 1.21091 0.95651 0.91042 0.90137 1.19672 0.95857 0.93423 0.96246 1.21254 1.31473 1.11436 0.93485 0.95272 1.26092 0.94527 0.95361 1.03445 1.70078 1.35065 1.17950 1.36066 0.85550 0.77605 0.80002 0.78805 1.18985 1.21482 1.15636 1.19914 0.95353 0.92638 0.98324 1.18497 1.00989 0.91685 0.96678 0.90435 0.88010 0.92476 0.88116 0.90758 0.93529 0.88070 0.70713 0.82313 0.82109 0.74785 0.93435 0.93496 0.94271 0.94369 0.92390 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.24 71.98 0.66 -0.32 16 2 C 0.12 1.38 3.54 44.99 0.16 1.54 16 3 C -0.16 -1.55 9.24 71.98 0.66 -0.88 16 4 N -0.48 -8.48 2.68 -609.51 -1.64 -10.12 16 5 C 0.47 8.60 8.34 179.75 1.50 10.10 16 6 O -0.44 -4.75 11.53 -84.86 -0.98 -5.73 16 7 N -0.53 -12.44 11.29 -306.26 -3.46 -15.90 16 8 C 0.07 1.62 7.22 39.61 0.29 1.91 16 9 C -0.07 -1.44 10.03 22.23 0.22 -1.22 16 10 C -0.08 -1.68 9.46 22.26 0.21 -1.47 16 11 C -0.13 -3.32 5.88 -20.06 -0.12 -3.44 16 12 C 0.56 18.29 7.76 86.69 0.67 18.96 16 13 O -0.59 -23.99 16.33 -4.01 -0.07 -24.05 16 14 N -0.71 -22.28 5.50 -466.28 -2.57 -24.85 16 15 C 0.14 5.83 5.61 86.38 0.48 6.31 16 16 C -0.01 -0.62 4.16 29.85 0.12 -0.50 16 17 C -0.54 -30.48 9.66 25.60 0.25 -30.23 16 18 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 19 C 0.00 0.15 5.47 84.66 0.46 0.62 16 20 N -0.95 -59.23 13.96 21.45 0.30 -58.94 16 21 Si 0.96 41.90 27.47 68.60 1.88 43.78 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.23 -8.97 6.54 99.48 0.65 -8.31 16 25 C -0.04 -1.01 9.42 22.58 0.21 -0.80 16 26 C 0.03 0.68 6.87 38.68 0.27 0.95 16 27 H 0.08 0.24 6.53 -2.38 -0.02 0.23 16 28 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 1.24 7.61 -2.39 -0.02 1.22 16 31 H 0.07 0.72 6.95 -2.39 -0.02 0.71 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.43 0.15 8.43 -74.06 -0.62 -0.47 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.16 2.34 6.36 -2.91 -0.02 2.32 16 37 H 0.41 10.00 6.47 -92.71 -0.60 9.40 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 41 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 42 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.13 3.32 7.32 -2.91 -0.02 3.30 16 Total: -1.00 -79.57 359.06 -0.68 -80.25 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -0.22 Total: 14.01 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 6.06 Total: 1.53 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -7.36 Total: -109.80 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.04 Total: -29.78 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.78 kcal Total: -79.57 -0.68 -80.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597495885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.063 kcal (2) G-P(sol) polarization free energy of solvation -79.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds