Wall clock time and date at job start Tue Mar 31 2020 11:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00080 * 2 1 4 4 N 1.46499 * 109.46992 * 234.99580 * 3 2 1 5 5 C 1.46502 * 120.00345 * 274.99969 * 4 3 2 6 6 C 1.50697 * 109.47079 * 85.00200 * 5 4 3 7 7 H 1.08000 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99754 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99674 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00100 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46920 * 90.00615 * 10 8 6 12 12 H 1.48502 * 109.46849 * 210.00337 * 10 8 6 13 13 H 1.48493 * 109.47130 * 330.00506 * 10 8 6 14 14 S 1.65605 * 119.99782 * 94.99996 * 4 3 2 15 15 O 1.42098 * 104.27771 * 206.06877 * 14 4 3 16 16 O 1.42097 * 104.27570 * 333.92835 * 14 4 3 17 17 C 1.81397 * 104.45020 * 89.99811 * 14 4 3 18 18 C 1.53001 * 109.47267 * 179.97438 * 17 14 4 19 19 C 1.53000 * 109.46906 * 180.02562 * 18 17 14 20 20 H 1.08999 * 109.47980 * 305.01487 * 19 18 17 21 21 C 1.53095 * 109.47712 * 184.99936 * 19 18 17 22 22 C 1.53174 * 109.16411 * 182.40498 * 21 19 18 23 23 C 1.53179 * 109.03653 * 56.98197 * 22 21 19 24 24 C 1.53099 * 109.16421 * 303.01946 * 23 22 21 25 25 O 1.42900 * 109.48440 * 65.05789 * 19 18 17 26 26 H 1.07999 * 119.99751 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99789 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00347 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47060 * 354.99792 * 3 2 1 30 30 H 1.09001 * 109.47380 * 114.99880 * 3 2 1 31 31 H 1.08998 * 109.47222 * 205.00373 * 5 4 3 32 32 H 1.09000 * 109.46517 * 324.99960 * 5 4 3 33 33 H 0.97002 * 120.00059 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47388 * 300.00192 * 17 14 4 35 35 H 1.09007 * 109.47215 * 59.99916 * 17 14 4 36 36 H 1.09006 * 109.46842 * 299.99919 * 18 17 14 37 37 H 1.08990 * 109.46967 * 59.99961 * 18 17 14 38 38 H 1.09002 * 109.52714 * 302.31268 * 21 19 18 39 39 H 1.09002 * 109.51986 * 62.50199 * 21 19 18 40 40 H 1.09001 * 109.54759 * 176.84804 * 22 21 19 41 41 H 1.09001 * 109.54333 * 297.02575 * 22 21 19 42 42 H 1.08999 * 109.52417 * 62.92627 * 23 22 21 43 43 H 1.09004 * 109.52462 * 183.11525 * 23 22 21 44 44 H 1.08994 * 109.48296 * 177.58618 * 24 23 22 45 45 H 1.09005 * 109.47783 * 297.62955 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 -1.1314 5 6 4.3218 0.7267 -1.0023 6 6 4.2324 -0.7485 -1.2971 7 1 3.2814 -1.1911 -1.5544 8 6 5.3644 -1.5332 -1.2373 9 7 5.2863 -2.8207 -1.4940 10 14 7.0091 -0.7678 -0.7915 11 1 7.1966 -0.8201 0.6807 12 1 8.1022 -1.5212 -1.4568 13 1 7.0358 0.6463 -1.2440 14 16 2.5443 2.0461 -2.5562 15 8 3.3283 1.3870 -3.5412 16 8 1.1266 1.9509 -2.5640 17 6 3.0652 3.7747 -2.3801 18 6 2.7012 4.5489 -3.6486 19 6 3.1411 6.0067 -3.5002 20 1 2.7054 6.4275 -2.5940 21 6 2.6669 6.8092 -4.7147 22 6 3.1624 8.2530 -4.5881 23 6 4.6884 8.2477 -4.4546 24 6 5.0845 7.3897 -3.2501 25 8 4.5664 6.0684 -3.4172 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5399 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 -0.0896 30 1 2.6213 1.4026 0.9314 31 1 5.0058 1.1975 -1.7084 32 1 4.6903 0.8727 0.0130 33 1 6.0828 -3.3728 -1.4523 34 1 2.5596 4.2211 -1.5239 35 1 4.1437 3.8155 -2.2269 36 1 3.2072 4.1023 -4.5046 37 1 1.6229 4.5082 -3.8022 38 1 3.0694 6.3645 -5.6249 39 1 1.5777 6.8000 -4.7546 40 1 2.8761 8.8161 -5.4763 41 1 2.7195 8.7144 -3.7054 42 1 5.1317 7.8321 -5.3594 43 1 5.0448 9.2674 -4.3084 44 1 6.1711 7.3473 -3.1756 45 1 4.6744 7.8286 -2.3405 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603345554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:17 Heat of formation + Delta-G solvation = -130.500317 kcal Electronic energy + Delta-G solvation = -25604.787788 eV Core-core repulsion = 21941.820006 eV Total energy + Delta-G solvation = -3662.967782 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41220 -38.13633 -37.92558 -36.82787 -35.29225 -34.83583 -34.54274 -33.65670 -31.04005 -29.84169 -26.72334 -26.34786 -24.71238 -23.84550 -22.61211 -21.19669 -20.85940 -19.69051 -18.91255 -18.55743 -17.63534 -17.40468 -17.11330 -16.73818 -16.24461 -15.90412 -15.60680 -15.42611 -15.34458 -14.86594 -14.68175 -14.46842 -14.44298 -13.95477 -13.67426 -13.55185 -13.42180 -13.18415 -13.04860 -13.00762 -12.86022 -12.50795 -12.48382 -12.24585 -12.14604 -12.11517 -11.96032 -11.89186 -11.87067 -11.49092 -11.39396 -11.11864 -10.72236 -10.35260 -10.21301 -9.70250 -8.22999 -6.26546 -0.65261 1.36160 1.39528 1.43785 1.51209 1.95802 2.39089 2.81367 3.03054 3.10583 3.27685 3.48156 3.77848 3.89315 3.95496 3.97652 4.00904 4.15357 4.23589 4.26420 4.29303 4.42644 4.49526 4.55802 4.72897 4.75075 4.76517 4.82591 4.84033 4.88985 4.91600 4.98144 5.08487 5.14748 5.15249 5.21875 5.34070 5.40729 5.54808 5.75446 5.86665 6.05122 6.33665 6.38157 6.77085 7.34903 8.94697 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.004113 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.426020 B = 6805.700709 C = 8122.107399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 C 0.155 3.845 4 N -0.987 5.987 5 C 0.229 3.771 6 C -0.528 4.528 7 H 0.031 0.969 8 C 0.002 3.998 9 N -0.954 5.954 10 Si 0.942 3.058 11 H -0.254 1.254 12 H -0.288 1.288 13 H -0.239 1.239 14 S 2.591 3.409 15 O -0.997 6.997 16 O -0.984 6.984 17 C -0.598 4.598 18 C -0.116 4.116 19 C 0.099 3.901 20 H 0.081 0.919 21 C -0.157 4.157 22 C -0.121 4.121 23 C -0.157 4.157 24 C 0.052 3.948 25 O -0.404 6.404 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.265 0.735 34 H 0.166 0.834 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 27.305 0.532 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.205 4.205 3 C 0.031 3.969 4 N -0.823 5.823 5 C 0.105 3.895 6 C -0.568 4.568 7 H 0.049 0.951 8 C -0.195 4.195 9 N -0.595 5.595 10 Si 0.764 3.236 11 H -0.178 1.178 12 H -0.214 1.214 13 H -0.162 1.162 14 S 2.689 3.311 15 O -0.987 6.987 16 O -0.974 6.974 17 C -0.731 4.731 18 C -0.155 4.155 19 C 0.040 3.960 20 H 0.099 0.901 21 C -0.195 4.195 22 C -0.158 4.158 23 C -0.194 4.194 24 C -0.024 4.024 25 O -0.324 6.324 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.184 0.816 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.759 26.526 -0.183 26.950 hybrid contribution 0.975 -0.406 0.132 1.064 sum -3.784 26.120 -0.052 26.393 Atomic orbital electron populations 1.23923 0.95217 1.02539 1.00037 1.23509 0.96781 0.99905 1.00268 1.20497 0.91221 0.95111 0.90108 1.57218 1.24135 1.70620 1.30340 1.19279 0.80270 0.91701 0.98284 1.21740 0.95145 0.93857 1.46032 0.95096 1.25938 1.03497 0.95097 0.94931 1.70088 1.30716 1.06987 1.51686 0.85803 0.78101 0.80116 0.79561 1.17843 1.21403 1.16249 1.05387 0.73717 0.78688 0.73282 1.93564 1.72108 1.73303 1.59734 1.93500 1.30173 1.87479 1.86261 1.30413 1.14099 1.20212 1.08369 1.21556 1.03330 0.95655 0.94992 1.22073 0.81546 0.93571 0.98765 0.90099 1.22295 1.02548 0.96413 0.98268 1.21602 0.95253 0.95693 1.03284 1.22204 0.96913 1.01266 0.99060 1.22770 0.99761 0.82372 0.97520 1.87943 1.21162 1.29109 1.94177 0.88655 0.86436 0.90004 0.87611 0.87916 0.94547 0.92549 0.92661 0.81622 0.83986 0.90848 0.87226 0.91794 0.89047 0.90438 0.90658 0.92081 0.89170 0.88477 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.82 14.32 67.78 0.97 -4.85 16 2 C -0.18 -7.06 9.32 25.65 0.24 -6.82 16 3 C 0.16 4.99 5.72 85.63 0.49 5.48 16 4 N -0.99 -38.37 2.72 -523.91 -1.42 -39.80 16 5 C 0.23 10.51 4.10 85.63 0.35 10.86 16 6 C -0.53 -31.09 9.21 25.60 0.24 -30.85 16 7 H 0.03 2.07 7.06 -2.91 -0.02 2.05 16 8 C 0.00 0.12 5.47 84.65 0.46 0.58 16 9 N -0.95 -61.78 13.96 21.45 0.30 -61.49 16 10 Si 0.94 43.60 27.47 68.60 1.88 45.48 16 11 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 14 S 2.59 95.67 5.32 -56.49 -0.30 95.37 16 15 O -1.00 -48.31 16.99 -127.65 -2.17 -50.48 16 16 O -0.98 -38.22 16.99 -127.65 -2.17 -40.39 16 17 C -0.60 -14.10 6.07 71.98 0.44 -13.67 16 18 C -0.12 -2.52 4.93 30.59 0.15 -2.37 16 19 C 0.10 1.76 2.64 30.63 0.08 1.84 16 20 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 21 C -0.16 -2.27 5.42 30.68 0.17 -2.10 16 22 C -0.12 -1.35 6.03 30.71 0.19 -1.17 16 23 C -0.16 -1.91 6.14 30.69 0.19 -1.72 16 24 C 0.05 0.78 6.84 72.02 0.49 1.27 16 25 O -0.40 -8.74 9.94 -148.98 -1.48 -10.22 16 26 H 0.10 2.95 8.06 -2.91 -0.02 2.92 16 27 H 0.12 3.17 7.84 -2.91 -0.02 3.15 16 28 H 0.08 3.84 6.84 -2.91 -0.02 3.82 16 29 H 0.11 2.59 7.26 -2.39 -0.02 2.58 16 30 H 0.10 2.80 8.00 -2.39 -0.02 2.78 16 31 H 0.04 1.66 6.67 -2.39 -0.02 1.65 16 32 H 0.06 2.29 7.43 -2.39 -0.02 2.27 16 33 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 34 H 0.17 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.14 3.40 7.82 -2.39 -0.02 3.38 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -82.94 373.34 -0.02 -82.97 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.89 Total: 22.06 kcal Atomic # 6 Polarization: -47.95 SS G_CDS: 4.45 Total: -43.50 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -1.12 Total: -101.28 kcal Atomic # 8 Polarization: -95.28 SS G_CDS: -5.82 Total: -101.09 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Atomic # 16 Polarization: 95.67 SS G_CDS: -0.30 Total: 95.37 kcal Total: -82.94 -0.02 -82.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603345554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.534 kcal (2) G-P(sol) polarization free energy of solvation -82.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds