Wall clock time and date at job start Tue Mar 31 2020 11:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47515 * 2 1 4 4 H 1.09004 * 109.46763 * 54.99818 * 3 2 1 5 5 C 1.50698 * 109.47449 * 174.99851 * 3 2 1 6 6 H 1.07998 * 120.00241 * 120.00285 * 5 3 2 7 7 C 1.37879 * 120.00066 * 300.00407 * 5 3 2 8 8 N 1.31512 * 119.99918 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00068 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46922 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47196 * 119.99765 * 9 7 5 12 12 H 1.48498 * 109.46806 * 240.00265 * 9 7 5 13 13 N 1.46499 * 109.47389 * 295.00142 * 3 2 1 14 14 C 1.34778 * 119.99862 * 84.99540 * 13 3 2 15 15 O 1.21591 * 120.00321 * 0.02562 * 14 13 3 16 16 N 1.34781 * 119.99863 * 180.02562 * 14 13 3 17 17 C 1.39982 * 119.99683 * 185.31548 * 16 14 13 18 18 C 1.38980 * 119.98061 * 213.30492 * 17 16 14 19 19 C 1.38303 * 120.36667 * 180.02562 * 18 17 16 20 20 C 1.37838 * 120.04095 * 359.95599 * 19 18 17 21 21 C 1.39748 * 119.94757 * 0.02562 * 20 19 18 22 22 C 1.38733 * 119.98586 * 33.29107 * 17 16 14 23 23 C 1.47909 * 118.77935 * 180.02562 * 21 20 19 24 24 O 1.21543 * 120.45235 * 197.69375 * 23 21 20 25 25 N 1.34824 * 119.09756 * 17.96283 * 23 21 20 26 26 C 1.46012 * 121.18429 * 2.17515 * 25 23 21 27 27 C 1.50576 * 120.87676 * 179.97438 * 20 19 18 28 28 H 1.08999 * 109.46836 * 59.99613 * 1 2 3 29 29 H 1.08995 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46942 * 299.99985 * 1 2 3 31 31 H 1.09004 * 109.46942 * 240.00015 * 2 1 3 32 32 H 1.09000 * 109.47198 * 119.99985 * 2 1 3 33 33 H 0.97003 * 119.99848 * 179.97438 * 8 7 5 34 34 H 0.96997 * 120.00435 * 265.00180 * 13 3 2 35 35 H 0.96998 * 120.00051 * 5.31619 * 16 14 13 36 36 H 1.07992 * 119.81946 * 0.02562 * 18 17 16 37 37 H 1.07995 * 119.98244 * 180.02562 * 19 18 17 38 38 H 1.07995 * 120.24289 * 0.03867 * 22 17 16 39 39 H 0.96998 * 119.41052 * 182.41763 * 25 23 21 40 40 H 1.08996 * 109.25549 * 202.19871 * 26 25 23 41 41 H 1.09001 * 108.90046 * 83.05393 * 26 25 23 42 42 H 1.08996 * 109.39425 * 266.14146 * 27 20 19 43 43 H 1.08998 * 109.39791 * 25.86621 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0051 0.8798 1.3812 10 1 6.5989 1.5440 0.1931 11 1 6.4001 1.6154 2.6092 12 1 6.4961 -0.5192 1.4626 13 7 1.6526 2.0975 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3411 2.6327 -0.4317 16 7 0.0786 3.2667 -2.5187 17 6 -1.1394 3.9515 -2.6024 18 6 -1.8445 3.9707 -3.7999 19 6 -3.0484 4.6452 -3.8916 20 6 -3.5565 5.3028 -2.7919 21 6 -2.8539 5.2880 -1.5840 22 6 -1.6423 4.6104 -1.4898 23 6 -3.4232 6.0017 -0.4203 24 8 -2.7221 6.2869 0.5307 25 7 -4.7316 6.3268 -0.4264 26 6 -5.6001 5.9458 -1.5366 27 6 -4.8651 6.0435 -2.8709 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0612 2.9499 34 1 2.2720 2.1232 -1.9978 35 1 0.6658 3.2255 -3.2896 36 1 -1.4502 3.4561 -4.6635 37 1 -3.5914 4.6557 -4.8251 38 1 -1.0970 4.5980 -0.5577 39 1 -5.1019 6.8258 0.3184 40 1 -6.4679 6.6051 -1.5568 41 1 -5.9344 4.9191 -1.3871 42 1 -4.6745 7.0915 -3.1023 43 1 -5.4813 5.6070 -3.6569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613855200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:47 Heat of formation + Delta-G solvation = -42.139948 kcal Electronic energy + Delta-G solvation = -26395.706263 eV Core-core repulsion = 22633.418875 eV Total energy + Delta-G solvation = -3762.287389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82768 -39.74386 -38.06313 -36.42527 -35.24436 -34.12133 -32.46864 -31.50426 -31.08429 -30.59082 -28.41495 -26.80757 -24.31294 -23.94360 -22.97556 -21.94348 -20.71410 -19.71727 -19.43602 -18.20845 -17.65196 -17.26597 -16.23852 -16.07556 -15.71127 -15.51492 -14.99900 -14.70465 -14.40031 -14.17189 -14.00922 -13.65537 -13.48610 -13.25932 -13.19365 -12.64509 -12.52047 -12.50061 -11.90856 -11.55149 -11.48274 -11.38309 -11.24558 -10.94237 -10.84446 -10.30179 -10.18158 -10.14548 -9.87173 -9.59542 -9.40798 -9.26054 -9.03179 -8.92578 -8.50287 -8.02946 -7.71426 -6.11661 -4.20999 0.83563 1.35642 2.79052 3.02842 3.20809 3.24735 3.33035 3.35699 3.67834 4.01820 4.32294 4.39441 4.42740 4.52144 4.83378 4.93530 4.96793 5.08469 5.15018 5.20238 5.26678 5.46911 5.60762 5.65138 5.87066 6.15895 6.29425 6.39981 6.41900 6.49059 6.50307 6.67976 6.76818 7.01092 7.06445 7.08551 7.14482 7.34585 7.38708 7.46116 7.65387 7.87073 7.97810 8.16923 8.19228 8.73250 8.84071 9.23831 9.47069 10.93788 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.003001 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.045944 B = 9327.145881 C = 9736.152075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.285 3.715 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.717 5.717 14 C 0.690 3.310 15 O -0.571 6.571 16 N -0.697 5.697 17 C 0.176 3.824 18 C -0.130 4.130 19 C -0.104 4.104 20 C -0.085 4.085 21 C -0.119 4.119 22 C -0.056 4.056 23 C 0.566 3.434 24 O -0.526 6.526 25 N -0.730 5.730 26 C 0.115 3.885 27 C -0.095 4.095 28 H 0.037 0.963 29 H 0.021 0.979 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.100 0.900 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.403 0.597 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.288 9.347 -14.993 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.368 5.368 14 C 0.391 3.609 15 O -0.448 6.448 16 N -0.345 5.345 17 C 0.080 3.920 18 C -0.152 4.152 19 C -0.122 4.122 20 C -0.087 4.087 21 C -0.123 4.123 22 C -0.078 4.078 23 C 0.354 3.646 24 O -0.403 6.403 25 N -0.384 5.384 26 C -0.010 4.010 27 C -0.132 4.132 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.238 0.762 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.171 0.829 39 H 0.239 0.761 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.405 9.176 -13.505 23.146 hybrid contribution 1.388 -0.009 -0.466 1.464 sum -15.017 9.167 -13.971 22.466 Atomic orbital electron populations 1.21819 0.98279 0.97893 1.01317 1.21957 0.92675 0.99850 1.02230 1.18751 0.94080 0.88905 0.79909 0.93108 1.21244 0.90594 1.39039 1.06352 0.92038 1.24881 0.98634 0.94817 0.95356 1.69908 1.35035 1.37548 1.09309 0.86389 0.84809 0.77726 0.78133 1.19779 1.20860 1.20897 1.45841 1.12887 1.58711 1.19319 1.16149 0.83740 0.78802 0.82257 1.90941 1.51640 1.64162 1.38063 1.42912 1.20054 1.56254 1.15273 1.17444 0.87016 0.93336 0.94251 1.21020 0.95121 1.01671 0.97358 1.20574 0.95699 0.98083 0.97873 1.19812 0.96262 0.99408 0.93197 1.19506 0.96652 1.02549 0.93583 1.21306 0.94437 0.92205 0.99810 1.18302 0.81691 0.78237 0.86360 1.90848 1.59721 1.53971 1.35715 1.45679 1.09273 1.59492 1.23988 1.21266 0.92656 1.01343 0.85738 1.20731 0.93803 1.00970 0.97712 0.94353 0.95991 0.93091 0.95101 0.88231 0.92579 0.78214 0.76169 0.85355 0.85264 0.82943 0.76089 0.89548 0.91564 0.89885 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.29 7.18 2.24 -69.08 -0.15 7.03 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 13 N -0.72 -14.67 5.03 -59.81 -0.30 -14.97 16 14 C 0.69 13.81 6.87 -86.91 -0.60 13.21 16 15 O -0.57 -13.62 11.16 5.29 0.06 -13.57 16 16 N -0.70 -10.52 5.35 -14.22 -0.08 -10.59 16 17 C 0.18 2.62 6.28 -83.68 -0.53 2.09 16 18 C -0.13 -1.44 9.95 -39.28 -0.39 -1.83 16 19 C -0.10 -0.99 9.72 -39.70 -0.39 -1.38 16 20 C -0.08 -0.92 5.69 -104.26 -0.59 -1.51 16 21 C -0.12 -1.77 5.78 -105.04 -0.61 -2.37 16 22 C -0.06 -0.97 8.24 -39.06 -0.32 -1.29 16 23 C 0.57 8.72 7.79 -12.28 -0.10 8.63 16 24 O -0.53 -10.42 17.45 5.33 0.09 -10.33 16 25 N -0.73 -7.59 5.58 -61.74 -0.34 -7.93 16 26 C 0.11 0.77 7.03 -4.48 -0.03 0.74 16 27 C -0.09 -0.64 6.04 -28.12 -0.17 -0.81 16 28 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 1.26 7.84 -51.93 -0.41 0.85 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.39 6.71 8.56 -40.82 -0.35 6.36 16 35 H 0.40 4.55 8.83 -40.82 -0.36 4.19 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.15 3.24 6.21 -52.49 -0.33 2.91 16 39 H 0.40 3.50 8.92 -40.82 -0.36 3.13 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.39 8.07 -51.93 -0.42 -0.03 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -34.55 350.80 -9.50 -44.05 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -5.72 Total: 12.80 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -4.10 Total: 3.77 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.10 Total: -57.67 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.15 Total: -23.89 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.55 -9.50 -44.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613855200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.905 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds