Wall clock time and date at job start Tue Mar 31 2020 11:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47515 * 2 1 4 4 H 1.09004 * 109.46763 * 54.99818 * 3 2 1 5 5 C 1.50698 * 109.47449 * 174.99851 * 3 2 1 6 6 H 1.07998 * 120.00241 * 120.00285 * 5 3 2 7 7 C 1.37879 * 120.00066 * 300.00407 * 5 3 2 8 8 N 1.31512 * 119.99918 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00068 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46922 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47196 * 119.99765 * 9 7 5 12 12 H 1.48498 * 109.46806 * 240.00265 * 9 7 5 13 13 N 1.46499 * 109.47389 * 295.00142 * 3 2 1 14 14 C 1.34778 * 119.99862 * 84.99540 * 13 3 2 15 15 O 1.21591 * 120.00321 * 0.02562 * 14 13 3 16 16 N 1.34781 * 119.99863 * 180.02562 * 14 13 3 17 17 C 1.39982 * 119.99683 * 185.31548 * 16 14 13 18 18 C 1.38980 * 119.98061 * 213.30492 * 17 16 14 19 19 C 1.38303 * 120.36667 * 180.02562 * 18 17 16 20 20 C 1.37838 * 120.04095 * 359.95599 * 19 18 17 21 21 C 1.39748 * 119.94757 * 0.02562 * 20 19 18 22 22 C 1.38733 * 119.98586 * 33.29107 * 17 16 14 23 23 C 1.47909 * 118.77935 * 180.02562 * 21 20 19 24 24 O 1.21543 * 120.45235 * 197.69375 * 23 21 20 25 25 N 1.34824 * 119.09756 * 17.96283 * 23 21 20 26 26 C 1.46012 * 121.18429 * 2.17515 * 25 23 21 27 27 C 1.50576 * 120.87676 * 179.97438 * 20 19 18 28 28 H 1.08999 * 109.46836 * 59.99613 * 1 2 3 29 29 H 1.08995 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46942 * 299.99985 * 1 2 3 31 31 H 1.09004 * 109.46942 * 240.00015 * 2 1 3 32 32 H 1.09000 * 109.47198 * 119.99985 * 2 1 3 33 33 H 0.97003 * 119.99848 * 179.97438 * 8 7 5 34 34 H 0.96997 * 120.00435 * 265.00180 * 13 3 2 35 35 H 0.96998 * 120.00051 * 5.31619 * 16 14 13 36 36 H 1.07992 * 119.81946 * 0.02562 * 18 17 16 37 37 H 1.07995 * 119.98244 * 180.02562 * 19 18 17 38 38 H 1.07995 * 120.24289 * 0.03867 * 22 17 16 39 39 H 0.96998 * 119.41052 * 182.41763 * 25 23 21 40 40 H 1.08996 * 109.25549 * 202.19871 * 26 25 23 41 41 H 1.09001 * 108.90046 * 83.05393 * 26 25 23 42 42 H 1.08996 * 109.39425 * 266.14146 * 27 20 19 43 43 H 1.08998 * 109.39791 * 25.86621 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0051 0.8798 1.3812 10 1 6.5989 1.5440 0.1931 11 1 6.4001 1.6154 2.6092 12 1 6.4961 -0.5192 1.4626 13 7 1.6526 2.0975 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3411 2.6327 -0.4317 16 7 0.0786 3.2667 -2.5187 17 6 -1.1394 3.9515 -2.6024 18 6 -1.8445 3.9707 -3.7999 19 6 -3.0484 4.6452 -3.8916 20 6 -3.5565 5.3028 -2.7919 21 6 -2.8539 5.2880 -1.5840 22 6 -1.6423 4.6104 -1.4898 23 6 -3.4232 6.0017 -0.4203 24 8 -2.7221 6.2869 0.5307 25 7 -4.7316 6.3268 -0.4264 26 6 -5.6001 5.9458 -1.5366 27 6 -4.8651 6.0435 -2.8709 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0612 2.9499 34 1 2.2720 2.1232 -1.9978 35 1 0.6658 3.2255 -3.2896 36 1 -1.4502 3.4561 -4.6635 37 1 -3.5914 4.6557 -4.8251 38 1 -1.0970 4.5980 -0.5577 39 1 -5.1019 6.8258 0.3184 40 1 -6.4679 6.6051 -1.5568 41 1 -5.9344 4.9191 -1.3871 42 1 -4.6745 7.0915 -3.1023 43 1 -5.4813 5.6070 -3.6569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613855200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:46 Heat of formation + Delta-G solvation = -69.568605 kcal Electronic energy + Delta-G solvation = -26396.895659 eV Core-core repulsion = 22633.418875 eV Total energy + Delta-G solvation = -3763.476785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94777 -41.12179 -39.28035 -37.61118 -36.82157 -35.49954 -34.33969 -32.95087 -32.22775 -31.83400 -29.56713 -28.61031 -25.47768 -25.09329 -24.54665 -23.07875 -22.16804 -21.37905 -20.62267 -19.79354 -18.76699 -18.30364 -17.97247 -17.25067 -16.92103 -16.82837 -16.55047 -16.01291 -15.92362 -15.47196 -15.08421 -15.02544 -14.59812 -14.56785 -14.39209 -14.11491 -13.89370 -13.55448 -13.23589 -13.19822 -12.99087 -12.87289 -12.72355 -12.39413 -12.23376 -12.13794 -12.07276 -11.63800 -11.35383 -11.10071 -11.03380 -10.93872 -10.56507 -10.20391 -9.91674 -9.72489 -8.93837 -8.17497 -6.35011 -0.17769 0.34352 1.43188 1.44109 1.55956 1.68846 1.76960 2.19264 2.29225 2.41461 2.86900 3.12152 3.40881 3.57602 3.76175 3.84098 4.08193 4.25231 4.40611 4.43184 4.46866 4.49858 4.54915 4.72034 4.72477 4.85100 4.97599 5.03229 5.11823 5.18376 5.23672 5.29924 5.41885 5.45946 5.50183 5.52967 5.59571 5.74095 5.85114 5.87568 6.02206 6.12803 6.15236 6.27101 6.73383 7.12625 7.24449 7.33678 7.70664 8.88428 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.003001 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.045944 B = 9327.145881 C = 9736.152075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.295 3.705 4 H -0.008 1.008 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.973 3.027 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.713 5.713 14 C 0.689 3.311 15 O -0.616 6.616 16 N -0.677 5.677 17 C 0.146 3.854 18 C -0.109 4.109 19 C -0.090 4.090 20 C -0.069 4.069 21 C -0.147 4.147 22 C -0.094 4.094 23 C 0.553 3.447 24 O -0.595 6.595 25 N -0.715 5.715 26 C 0.103 3.897 27 C -0.093 4.093 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.019 0.981 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.423 0.577 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.092 0.908 39 H 0.410 0.590 40 H 0.131 0.869 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 9.700 -19.851 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.192 3.808 4 H 0.010 0.990 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.798 3.202 10 H -0.183 1.183 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.389 3.611 15 O -0.495 6.495 16 N -0.327 5.327 17 C 0.050 3.950 18 C -0.130 4.130 19 C -0.108 4.108 20 C -0.071 4.071 21 C -0.151 4.151 22 C -0.116 4.116 23 C 0.342 3.658 24 O -0.477 6.477 25 N -0.366 5.366 26 C -0.020 4.020 27 C -0.130 4.130 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.262 0.738 36 H 0.185 0.815 37 H 0.202 0.798 38 H 0.110 0.890 39 H 0.247 0.753 40 H 0.149 0.851 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.316 9.562 -18.474 27.717 hybrid contribution 1.760 -0.025 0.979 2.014 sum -16.557 9.537 -17.495 25.907 Atomic orbital electron populations 1.21635 0.97215 0.98896 0.99963 1.21787 0.93493 0.99098 1.01460 1.18278 0.93586 0.88885 0.80087 0.98972 1.21586 0.91162 1.38907 1.06827 0.90849 1.25803 1.03500 0.94379 0.94953 1.70069 1.37076 1.38360 1.09876 0.85281 0.78879 0.77892 0.78166 1.18300 1.21275 1.20204 1.45414 1.13697 1.58976 1.18484 1.16271 0.83038 0.78695 0.83083 1.90929 1.52872 1.65575 1.40169 1.42495 1.20849 1.55227 1.14135 1.17673 0.87527 0.94485 0.95293 1.21475 0.94839 1.00382 0.96288 1.21219 0.94812 0.95589 0.99185 1.20382 0.97161 0.98110 0.91453 1.19621 0.96644 1.03399 0.95389 1.20993 0.96135 0.95719 0.98760 1.18707 0.83084 0.78053 0.85997 1.90797 1.61843 1.56965 1.38062 1.45739 1.07841 1.57754 1.25311 1.21718 0.93117 1.02672 0.84446 1.20948 0.91849 1.01501 0.98723 0.93965 0.93539 0.96201 0.93602 0.90954 0.92592 0.76192 0.73787 0.81549 0.79846 0.88956 0.75313 0.85111 0.91321 0.88425 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.51 71.98 0.61 -5.09 16 2 C -0.12 -6.06 5.45 30.59 0.17 -5.89 16 3 C 0.30 15.71 2.24 44.24 0.10 15.81 16 4 H -0.01 -0.49 7.58 -2.38 -0.02 -0.51 16 5 C -0.55 -29.53 8.73 25.60 0.22 -29.30 16 6 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 7 C 0.01 0.75 5.29 84.66 0.45 1.20 16 8 N -0.92 -53.79 11.29 21.45 0.24 -53.55 16 9 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.71 -30.37 5.03 -461.40 -2.32 -32.69 16 14 C 0.69 29.18 6.87 179.05 1.23 30.41 16 15 O -0.62 -32.16 11.16 -4.00 -0.04 -32.21 16 16 N -0.68 -20.73 5.35 -317.15 -1.70 -22.43 16 17 C 0.15 4.34 6.28 38.14 0.24 4.58 16 18 C -0.11 -2.01 9.95 22.46 0.22 -1.78 16 19 C -0.09 -1.24 9.72 22.19 0.22 -1.02 16 20 C -0.07 -1.27 5.69 -19.63 -0.11 -1.38 16 21 C -0.15 -4.50 5.78 -20.13 -0.12 -4.62 16 22 C -0.09 -3.55 8.24 22.61 0.19 -3.36 16 23 C 0.55 18.24 7.79 86.80 0.68 18.91 16 24 O -0.59 -26.43 17.45 -3.85 -0.07 -26.50 16 25 N -0.71 -14.48 5.58 -467.49 -2.61 -17.09 16 26 C 0.10 1.00 7.03 86.36 0.61 1.60 16 27 C -0.09 -0.77 6.04 29.69 0.18 -0.59 16 28 H 0.04 1.95 5.64 -2.39 -0.01 1.94 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.02 1.02 7.84 -2.38 -0.02 1.00 16 31 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.07 4.10 5.95 -2.39 -0.01 4.09 16 33 H 0.26 14.71 8.31 -92.71 -0.77 13.93 16 34 H 0.40 14.08 8.56 -92.71 -0.79 13.29 16 35 H 0.42 9.04 8.83 -92.71 -0.82 8.22 16 36 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 38 H 0.09 4.55 6.21 -2.91 -0.02 4.53 16 39 H 0.41 7.05 8.92 -92.71 -0.83 6.22 16 40 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.14 0.06 8.07 -2.39 -0.02 0.04 16 Total: -1.00 -87.88 350.80 -0.95 -88.82 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -1.36 Total: 31.17 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 4.88 Total: 19.47 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -6.38 Total: -125.76 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -0.11 Total: -58.70 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -87.88 -0.95 -88.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613855200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.255 kcal (2) G-P(sol) polarization free energy of solvation -87.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds