Wall clock time and date at job start Tue Mar 31 2020 11:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47556 * 2 1 4 4 N 1.46498 * 109.47304 * 119.99967 * 2 1 3 5 5 C 1.46507 * 119.99943 * 304.66243 * 4 2 1 6 6 C 1.50699 * 109.47119 * 263.35180 * 5 4 2 7 7 H 1.08004 * 120.00145 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99848 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99873 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47160 * 89.99714 * 10 8 6 12 12 H 1.48507 * 109.46726 * 209.99737 * 10 8 6 13 13 H 1.48503 * 109.47043 * 329.99326 * 10 8 6 14 14 C 1.34775 * 120.00314 * 124.66302 * 4 2 1 15 15 O 1.21695 * 120.00020 * 4.26296 * 14 4 2 16 16 C 1.46657 * 120.00075 * 184.26262 * 14 4 2 17 17 C 1.36551 * 125.98650 * 173.91216 * 16 14 4 18 18 C 1.40369 * 106.70583 * 179.77322 * 17 16 14 19 19 C 1.35133 * 107.11619 * 0.40429 * 18 17 16 20 20 C 1.50693 * 125.61870 * 179.85005 * 19 18 17 21 21 N 1.46497 * 109.47294 * 89.72028 * 20 19 18 22 22 C 1.34950 * 126.03743 * 124.99861 * 21 20 19 23 23 C 1.35312 * 107.74703 * 179.77433 * 22 21 20 24 24 C 1.39876 * 107.92170 * 0.22769 * 23 22 21 25 25 N 1.30839 * 108.19961 * 0.02562 * 24 23 22 26 26 O 1.33936 * 108.76464 * 359.59134 * 19 18 17 27 27 H 1.09008 * 109.47121 * 300.00472 * 1 2 3 28 28 H 1.08997 * 109.47204 * 60.00019 * 1 2 3 29 29 H 1.08994 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47121 * 239.99528 * 2 1 3 31 31 H 1.08999 * 109.47796 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46439 * 299.99923 * 3 2 1 33 33 H 1.08999 * 109.47484 * 59.99662 * 3 2 1 34 34 H 1.08998 * 109.46956 * 23.35064 * 5 4 2 35 35 H 1.08998 * 109.47071 * 143.35170 * 5 4 2 36 36 H 0.97003 * 119.99880 * 180.02562 * 9 8 6 37 37 H 1.07995 * 126.64650 * 0.02562 * 17 16 14 38 38 H 1.07997 * 126.43943 * 180.26326 * 18 17 16 39 39 H 1.09007 * 109.46755 * 329.72141 * 20 19 18 40 40 H 1.09000 * 109.47589 * 209.72524 * 20 19 18 41 41 H 1.07997 * 126.12524 * 0.04003 * 22 21 20 42 42 H 1.07991 * 126.04415 * 180.20851 * 23 22 21 43 43 H 1.07995 * 125.90399 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5822 -0.2524 2.5244 6 6 2.6186 0.6685 3.1150 7 1 3.5129 0.9035 2.5570 8 6 2.4256 1.2102 4.3681 9 7 1.3367 0.9236 5.0477 10 14 3.7100 2.3523 5.0999 11 1 3.4008 3.7538 4.7187 12 1 3.6976 2.2275 6.5796 13 1 5.0524 1.9833 4.5832 14 6 2.8688 -1.7290 1.0748 15 8 3.2919 -2.0440 -0.0219 16 6 3.2844 -2.4794 2.2643 17 6 4.0418 -3.6156 2.2722 18 6 4.1994 -3.9862 3.6169 19 6 3.5320 -3.0766 4.3609 20 6 3.4261 -3.0801 5.8641 21 7 4.5384 -2.3155 6.4338 22 6 4.4320 -1.2742 7.2855 23 6 5.6836 -0.8509 7.5778 24 6 6.5856 -1.6580 6.8766 25 7 5.9001 -2.5340 6.1878 26 8 2.9850 -2.1684 3.5425 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 0.6328 0.2763 2.4389 35 1 1.4574 -1.1211 3.1708 36 1 1.2008 1.3049 5.9292 37 1 4.4452 -4.1273 1.4110 38 1 4.7485 -4.8392 3.9871 39 1 3.4663 -4.1065 6.2288 40 1 2.4818 -2.6251 6.1629 41 1 3.5129 -0.8565 7.6689 42 1 5.9407 -0.0341 8.2357 43 1 7.6619 -1.5728 6.8998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726533234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:13 Heat of formation + Delta-G solvation = 68.126142 kcal Electronic energy + Delta-G solvation = -27750.153327 eV Core-core repulsion = 23992.647435 eV Total energy + Delta-G solvation = -3757.505892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.18252 -40.73613 -39.04761 -35.94435 -33.90347 -32.99810 -32.41665 -31.47403 -30.01172 -29.12895 -27.27878 -26.71025 -26.19803 -23.12870 -22.66221 -21.30732 -20.80511 -20.58073 -19.89420 -18.75076 -17.22170 -16.96668 -16.51577 -16.02520 -15.50827 -15.28511 -14.73643 -14.48277 -14.13019 -13.75063 -13.67375 -13.33600 -13.14895 -12.78769 -12.71962 -12.57127 -12.48520 -12.47309 -12.36889 -11.76613 -11.66771 -11.56752 -11.25253 -11.02953 -10.83915 -10.66019 -10.40541 -10.34367 -10.00293 -9.68957 -9.53024 -9.47197 -9.18144 -8.53060 -8.38850 -8.16680 -7.75086 -6.16933 -4.20079 1.52114 2.17120 2.52733 3.13891 3.14588 3.16377 3.22296 3.28790 3.37726 3.81214 3.85909 4.35703 4.78008 4.87441 5.17162 5.17675 5.21160 5.28235 5.36760 5.40905 5.51654 5.61911 5.76629 5.81894 6.03416 6.04956 6.08594 6.10855 6.20588 6.23843 6.28358 6.32203 6.36646 6.66802 6.74043 6.79428 6.90257 6.93953 7.23219 7.25094 7.41700 7.58927 7.77673 7.97366 8.07053 8.18146 8.73206 8.87775 9.45041 10.90105 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.006302 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.182199 B = 4441.956920 C = 5927.021833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.154 4.154 4 N -0.579 5.579 5 C 0.232 3.768 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.073 3.927 9 N -0.893 5.893 10 Si 0.883 3.117 11 H -0.282 1.282 12 H -0.281 1.281 13 H -0.274 1.274 14 C 0.595 3.405 15 O -0.557 6.557 16 C -0.034 4.034 17 C -0.153 4.153 18 C -0.186 4.186 19 C -0.027 4.027 20 C 0.219 3.781 21 N -0.366 5.366 22 C 0.072 3.928 23 C -0.282 4.282 24 C 0.041 3.959 25 N -0.289 5.289 26 O -0.099 6.099 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.261 0.739 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.173 0.827 42 H 0.143 0.857 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -5.654 2.614 6.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 C -0.212 4.212 4 N -0.308 5.308 5 C 0.113 3.887 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.130 4.130 9 N -0.532 5.532 10 Si 0.711 3.289 11 H -0.208 1.208 12 H -0.207 1.207 13 H -0.199 1.199 14 C 0.383 3.617 15 O -0.440 6.440 16 C -0.089 4.089 17 C -0.174 4.174 18 C -0.206 4.206 19 C -0.082 4.082 20 C 0.098 3.902 21 N -0.149 5.149 22 C -0.074 4.074 23 C -0.311 4.311 24 C -0.145 4.145 25 N -0.110 5.110 26 O 0.009 5.991 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.190 0.810 42 H 0.161 0.839 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.749 -6.528 1.467 6.732 hybrid contribution 0.819 1.510 1.147 2.066 sum 1.569 -5.017 2.614 5.871 Atomic orbital electron populations 1.22136 0.95288 1.01855 1.02409 1.20936 0.93716 0.93606 0.88493 1.22083 1.01446 0.95615 1.02057 1.48305 1.43533 1.29248 1.09732 1.19682 0.96313 0.96272 0.76472 1.21353 1.05213 1.27625 1.01401 0.92605 1.24757 0.95332 0.96325 0.96538 1.69936 1.25845 1.44511 1.12889 0.86701 0.82435 0.81102 0.78651 1.20797 1.20670 1.19903 1.16694 0.79274 0.80227 0.85472 1.90756 1.57726 1.70132 1.25386 1.22136 1.04927 0.98485 0.83306 1.21768 1.01087 0.96760 0.97789 1.21407 1.04151 1.02533 0.92534 1.22470 1.01054 0.91846 0.92789 1.19918 0.87818 0.97538 0.84908 1.48624 1.05050 1.25871 1.35334 1.22612 1.00379 0.90303 0.94088 1.21445 0.91738 1.06922 1.11001 1.23810 1.00149 0.94574 0.95981 1.77322 0.86438 1.24573 1.22713 1.84727 1.56893 1.42670 1.14828 0.91390 0.92036 0.92853 0.89407 0.92795 0.92950 0.90624 0.93890 0.93250 0.92903 0.82956 0.83397 0.87081 0.86397 0.80981 0.83938 0.80432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.10 37.15 0.34 -2.17 16 2 C 0.14 2.52 3.24 -67.94 -0.22 2.30 16 3 C -0.15 -2.75 8.92 37.16 0.33 -2.42 16 4 N -0.58 -12.51 2.38 -169.01 -0.40 -12.91 16 5 C 0.23 5.45 4.12 -5.19 -0.02 5.43 16 6 C -0.52 -13.36 7.51 -34.44 -0.26 -13.62 16 7 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 8 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 9 N -0.89 -23.23 13.29 55.43 0.74 -22.49 16 10 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.60 13.39 7.58 -12.86 -0.10 13.30 16 15 O -0.56 -13.09 16.22 5.19 0.08 -13.00 16 16 C -0.03 -0.73 6.75 -36.79 -0.25 -0.98 16 17 C -0.15 -2.85 10.63 -39.39 -0.42 -3.27 16 18 C -0.19 -3.12 10.77 -39.88 -0.43 -3.55 16 19 C -0.03 -0.50 6.74 -35.42 -0.24 -0.73 16 20 C 0.22 3.23 7.04 -5.20 -0.04 3.19 16 21 N -0.37 -6.14 3.67 -62.55 -0.23 -6.37 16 22 C 0.07 1.17 11.45 -17.22 -0.20 0.97 16 23 C -0.28 -4.37 10.80 -40.01 -0.43 -4.81 16 24 C 0.04 0.65 12.03 -17.36 -0.21 0.44 16 25 N -0.29 -5.10 12.40 30.63 0.38 -4.72 16 26 O -0.10 -2.14 6.62 4.99 0.03 -2.10 16 27 H 0.07 1.14 6.50 -51.92 -0.34 0.81 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.64 6.93 -51.92 -0.36 1.28 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.07 1.48 7.29 -51.93 -0.38 1.10 16 34 H 0.04 1.04 6.20 -51.93 -0.32 0.72 16 35 H 0.05 1.24 5.37 -51.93 -0.28 0.96 16 36 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 37 H 0.15 2.57 8.06 -52.49 -0.42 2.15 16 38 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.11 1.24 8.14 -51.92 -0.42 0.81 16 40 H 0.12 1.62 8.07 -51.93 -0.42 1.20 16 41 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 42 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -31.05 365.04 -7.02 -38.07 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.87 Total: 6.38 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.24 Total: -4.14 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.49 Total: -46.49 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.12 Total: -15.11 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.05 -7.02 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726533234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.200 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds