Wall clock time and date at job start Tue Mar 31 2020 11:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47556 * 2 1 4 4 N 1.46498 * 109.47304 * 119.99967 * 2 1 3 5 5 C 1.46507 * 119.99943 * 304.66243 * 4 2 1 6 6 C 1.50699 * 109.47119 * 263.35180 * 5 4 2 7 7 H 1.08004 * 120.00145 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99848 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99873 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47160 * 89.99714 * 10 8 6 12 12 H 1.48507 * 109.46726 * 209.99737 * 10 8 6 13 13 H 1.48503 * 109.47043 * 329.99326 * 10 8 6 14 14 C 1.34775 * 120.00314 * 124.66302 * 4 2 1 15 15 O 1.21695 * 120.00020 * 4.26296 * 14 4 2 16 16 C 1.46657 * 120.00075 * 184.26262 * 14 4 2 17 17 C 1.36551 * 125.98650 * 173.91216 * 16 14 4 18 18 C 1.40369 * 106.70583 * 179.77322 * 17 16 14 19 19 C 1.35133 * 107.11619 * 0.40429 * 18 17 16 20 20 C 1.50693 * 125.61870 * 179.85005 * 19 18 17 21 21 N 1.46497 * 109.47294 * 89.72028 * 20 19 18 22 22 C 1.34950 * 126.03743 * 124.99861 * 21 20 19 23 23 C 1.35312 * 107.74703 * 179.77433 * 22 21 20 24 24 C 1.39876 * 107.92170 * 0.22769 * 23 22 21 25 25 N 1.30839 * 108.19961 * 0.02562 * 24 23 22 26 26 O 1.33936 * 108.76464 * 359.59134 * 19 18 17 27 27 H 1.09008 * 109.47121 * 300.00472 * 1 2 3 28 28 H 1.08997 * 109.47204 * 60.00019 * 1 2 3 29 29 H 1.08994 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47121 * 239.99528 * 2 1 3 31 31 H 1.08999 * 109.47796 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46439 * 299.99923 * 3 2 1 33 33 H 1.08999 * 109.47484 * 59.99662 * 3 2 1 34 34 H 1.08998 * 109.46956 * 23.35064 * 5 4 2 35 35 H 1.08998 * 109.47071 * 143.35170 * 5 4 2 36 36 H 0.97003 * 119.99880 * 180.02562 * 9 8 6 37 37 H 1.07995 * 126.64650 * 0.02562 * 17 16 14 38 38 H 1.07997 * 126.43943 * 180.26326 * 18 17 16 39 39 H 1.09007 * 109.46755 * 329.72141 * 20 19 18 40 40 H 1.09000 * 109.47589 * 209.72524 * 20 19 18 41 41 H 1.07997 * 126.12524 * 0.04003 * 22 21 20 42 42 H 1.07991 * 126.04415 * 180.20851 * 23 22 21 43 43 H 1.07995 * 125.90399 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5822 -0.2524 2.5244 6 6 2.6186 0.6685 3.1150 7 1 3.5129 0.9035 2.5570 8 6 2.4256 1.2102 4.3681 9 7 1.3367 0.9236 5.0477 10 14 3.7100 2.3523 5.0999 11 1 3.4008 3.7538 4.7187 12 1 3.6976 2.2275 6.5796 13 1 5.0524 1.9833 4.5832 14 6 2.8688 -1.7290 1.0748 15 8 3.2919 -2.0440 -0.0219 16 6 3.2844 -2.4794 2.2643 17 6 4.0418 -3.6156 2.2722 18 6 4.1994 -3.9862 3.6169 19 6 3.5320 -3.0766 4.3609 20 6 3.4261 -3.0801 5.8641 21 7 4.5384 -2.3155 6.4338 22 6 4.4320 -1.2742 7.2855 23 6 5.6836 -0.8509 7.5778 24 6 6.5856 -1.6580 6.8766 25 7 5.9001 -2.5340 6.1878 26 8 2.9850 -2.1684 3.5425 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 0.6328 0.2763 2.4389 35 1 1.4574 -1.1211 3.1708 36 1 1.2008 1.3049 5.9292 37 1 4.4452 -4.1273 1.4110 38 1 4.7485 -4.8392 3.9871 39 1 3.4663 -4.1065 6.2288 40 1 2.4818 -2.6251 6.1629 41 1 3.5129 -0.8565 7.6689 42 1 5.9407 -0.0341 8.2357 43 1 7.6619 -1.5728 6.8998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726533234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:11 Heat of formation + Delta-G solvation = 50.988525 kcal Electronic energy + Delta-G solvation = -27750.896470 eV Core-core repulsion = 23992.647435 eV Total energy + Delta-G solvation = -3758.249035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.66349 -41.94205 -40.72297 -37.62373 -35.18526 -34.85266 -33.87438 -33.12996 -31.28163 -30.45551 -29.18493 -28.09351 -27.52265 -25.03421 -24.13924 -22.70199 -22.06552 -21.89474 -21.27401 -20.33873 -18.86293 -18.36231 -18.33600 -17.59783 -17.10105 -16.73403 -16.39092 -15.93642 -15.72952 -15.22430 -14.92523 -14.82191 -14.50481 -14.32719 -14.15968 -14.07429 -13.95988 -13.90973 -13.66169 -13.34273 -13.16128 -13.00216 -12.83005 -12.80878 -12.52611 -12.32309 -12.10726 -11.69259 -11.63003 -11.54717 -11.24715 -10.93359 -10.52571 -10.41742 -9.80374 -9.55581 -9.38820 -8.16325 -6.24295 0.00763 0.90996 1.20264 1.33448 1.37097 1.45810 1.71993 1.89901 1.96362 2.17894 2.25687 2.43240 3.14769 3.39487 3.71809 3.77592 3.98600 4.02416 4.04539 4.20650 4.23904 4.27681 4.36130 4.60993 4.63883 4.67820 4.76400 4.78165 4.84386 4.87425 4.89783 4.94857 5.09026 5.13226 5.23145 5.39294 5.41713 5.43445 5.69450 5.75065 5.77699 6.04633 6.07914 6.10602 6.41192 6.76310 6.80409 7.08827 7.42525 8.90365 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.006302 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.182199 B = 4441.956920 C = 5927.021833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.125 3.875 3 C -0.145 4.145 4 N -0.582 5.582 5 C 0.252 3.748 6 C -0.522 4.522 7 H 0.030 0.970 8 C 0.046 3.954 9 N -0.905 5.905 10 Si 0.925 3.075 11 H -0.279 1.279 12 H -0.261 1.261 13 H -0.294 1.294 14 C 0.587 3.413 15 O -0.578 6.578 16 C -0.079 4.079 17 C -0.141 4.141 18 C -0.178 4.178 19 C -0.031 4.031 20 C 0.215 3.785 21 N -0.375 5.375 22 C 0.055 3.945 23 C -0.289 4.289 24 C 0.037 3.963 25 N -0.319 5.319 26 O -0.127 6.127 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.038 0.962 36 H 0.267 0.733 37 H 0.167 0.833 38 H 0.181 0.819 39 H 0.151 0.849 40 H 0.123 0.877 41 H 0.184 0.816 42 H 0.162 0.838 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -5.938 3.451 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.203 4.203 4 N -0.311 5.311 5 C 0.132 3.868 6 C -0.561 4.561 7 H 0.048 0.952 8 C -0.155 4.155 9 N -0.544 5.544 10 Si 0.752 3.248 11 H -0.205 1.205 12 H -0.185 1.185 13 H -0.221 1.221 14 C 0.376 3.624 15 O -0.462 6.462 16 C -0.132 4.132 17 C -0.162 4.162 18 C -0.198 4.198 19 C -0.085 4.085 20 C 0.095 3.905 21 N -0.158 5.158 22 C -0.090 4.090 23 C -0.318 4.318 24 C -0.149 4.149 25 N -0.140 5.140 26 O -0.021 6.021 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.184 0.816 38 H 0.198 0.802 39 H 0.168 0.832 40 H 0.141 0.859 41 H 0.202 0.798 42 H 0.180 0.820 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.919 -6.803 2.307 7.243 hybrid contribution 0.807 1.579 0.912 1.994 sum 1.726 -5.225 3.220 6.375 Atomic orbital electron populations 1.22059 0.92907 1.02270 1.03391 1.21236 0.95650 0.93517 0.87307 1.22001 1.00014 0.95422 1.02824 1.48367 1.43416 1.29346 1.09947 1.19281 0.95189 0.95106 0.77214 1.21293 1.04760 1.28374 1.01668 0.95207 1.25164 0.96539 0.97141 0.96672 1.69966 1.26379 1.44828 1.13243 0.86076 0.79676 0.79847 0.79169 1.20524 1.18514 1.22072 1.16961 0.79135 0.80406 0.85885 1.90714 1.58552 1.70821 1.26145 1.22140 1.07644 1.00147 0.83276 1.22097 0.99329 0.95511 0.99267 1.21733 1.03640 1.03053 0.91349 1.23244 1.00046 0.91048 0.94116 1.20291 0.87684 0.99724 0.82799 1.48762 1.05133 1.26285 1.35600 1.22991 1.01318 0.90415 0.94322 1.21805 0.91547 1.07340 1.11144 1.24388 1.01648 0.93812 0.95047 1.77260 0.87027 1.25854 1.23904 1.84661 1.58007 1.44207 1.15209 0.92700 0.88625 0.92737 0.89459 0.94886 0.89171 0.92715 0.94721 0.94482 0.92321 0.81555 0.80164 0.83154 0.85871 0.79849 0.82016 0.77554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.10 71.98 0.65 -3.89 16 2 C 0.13 4.65 3.24 44.99 0.15 4.80 16 3 C -0.14 -5.17 8.92 71.98 0.64 -4.52 16 4 N -0.58 -25.83 2.38 -806.85 -1.92 -27.75 16 5 C 0.25 12.19 4.12 85.63 0.35 12.54 16 6 C -0.52 -27.60 7.51 25.60 0.19 -27.41 16 7 H 0.03 1.70 7.81 -2.91 -0.02 1.68 16 8 C 0.05 2.38 5.46 84.65 0.46 2.84 16 9 N -0.90 -46.78 13.29 21.45 0.28 -46.49 16 10 Si 0.93 42.43 29.54 68.60 2.03 44.46 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 13 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 14 C 0.59 27.15 7.58 86.44 0.65 27.80 16 15 O -0.58 -27.72 16.22 -4.33 -0.07 -27.79 16 16 C -0.08 -3.43 6.75 24.08 0.16 -3.27 16 17 C -0.14 -5.19 10.63 22.39 0.24 -4.95 16 18 C -0.18 -5.68 10.77 22.07 0.24 -5.44 16 19 C -0.03 -1.08 6.74 24.97 0.17 -0.91 16 20 C 0.22 5.99 7.04 85.63 0.60 6.59 16 21 N -0.37 -12.02 3.67 -351.81 -1.29 -13.31 16 22 C 0.06 1.71 11.45 83.54 0.96 2.66 16 23 C -0.29 -8.43 10.80 21.99 0.24 -8.19 16 24 C 0.04 1.09 12.03 85.24 1.03 2.12 16 25 N -0.32 -10.73 12.40 -57.02 -0.71 -11.44 16 26 O -0.13 -5.57 6.62 -5.07 -0.03 -5.61 16 27 H 0.05 1.82 6.50 -2.38 -0.02 1.81 16 28 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 3.26 6.93 -2.38 -0.02 3.25 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.05 2.17 7.29 -2.39 -0.02 2.15 16 34 H 0.03 1.72 6.20 -2.39 -0.01 1.71 16 35 H 0.04 1.92 5.37 -2.39 -0.01 1.91 16 36 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 37 H 0.17 5.48 8.06 -2.91 -0.02 5.46 16 38 H 0.18 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.15 2.92 8.14 -2.38 -0.02 2.90 16 40 H 0.12 3.25 8.07 -2.39 -0.02 3.24 16 41 H 0.18 5.03 8.06 -2.91 -0.02 5.01 16 42 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 43 H 0.21 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -67.48 365.04 6.04 -61.44 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.02 Total: 25.73 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 6.73 Total: 0.77 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -3.63 Total: -98.99 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.10 Total: -33.40 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -67.48 6.04 -61.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726533234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.424 kcal (2) G-P(sol) polarization free energy of solvation -67.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds