Wall clock time and date at job start Tue Mar 31 2020 11:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47106 * 2 1 4 4 N 1.46897 * 109.47036 * 120.00243 * 2 1 3 5 5 C 1.46905 * 110.99785 * 306.70166 * 4 2 1 6 6 C 1.50699 * 109.46930 * 287.16666 * 5 4 2 7 7 H 1.07995 * 119.99931 * 357.81303 * 6 5 4 8 8 C 1.37878 * 119.99492 * 177.80689 * 6 5 4 9 9 N 1.31513 * 120.00547 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99680 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46915 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47157 * 119.99897 * 10 8 6 13 13 H 1.48493 * 109.46953 * 240.00341 * 10 8 6 14 14 C 1.46899 * 111.00137 * 70.65326 * 4 2 1 15 15 N 1.46501 * 109.47202 * 73.76860 * 14 4 2 16 16 N 1.39837 * 125.41087 * 82.97221 * 15 14 4 17 17 C 1.30198 * 110.12833 * 180.02562 * 16 15 14 18 18 C 1.46051 * 107.70527 * 0.02562 * 17 16 15 19 19 C 1.39571 * 133.88842 * 179.97438 * 18 17 16 20 20 C 1.39011 * 119.40489 * 179.23739 * 19 18 17 21 21 C 1.47549 * 119.92291 * 180.22066 * 20 19 18 22 22 O 1.21492 * 119.99848 * 0.43564 * 21 20 19 23 23 O 1.34732 * 119.99963 * 180.43544 * 21 20 19 24 24 C 1.40388 * 120.14808 * 0.65522 * 20 19 18 25 25 C 1.36151 * 120.66469 * 359.61112 * 24 20 19 26 26 C 1.36796 * 125.40424 * 262.67834 * 15 14 4 27 27 H 1.09000 * 109.47018 * 308.09176 * 1 2 3 28 28 H 1.09001 * 109.46704 * 68.08868 * 1 2 3 29 29 H 1.09002 * 109.46894 * 188.08957 * 1 2 3 30 30 H 1.09005 * 109.46672 * 239.99520 * 2 1 3 31 31 H 1.09004 * 109.47298 * 171.78068 * 3 2 1 32 32 H 1.09006 * 109.47162 * 291.77217 * 3 2 1 33 33 H 1.08998 * 109.47495 * 51.78171 * 3 2 1 34 34 H 1.09003 * 109.47216 * 47.17194 * 5 4 2 35 35 H 1.09002 * 109.46743 * 167.17082 * 5 4 2 36 36 H 0.97000 * 120.00056 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.47397 * 313.76256 * 14 4 2 38 38 H 1.09002 * 109.47288 * 193.76161 * 14 4 2 39 39 H 1.08004 * 126.14528 * 180.02562 * 17 16 15 40 40 H 1.07998 * 120.29083 * 0.02562 * 19 18 17 41 41 H 0.96701 * 117.00096 * 179.97438 * 23 21 20 42 42 H 1.07998 * 119.66559 * 179.58216 * 24 20 19 43 43 H 1.07997 * 119.90179 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4223 -0.1251 2.4156 6 6 2.0291 1.2269 2.6895 7 1 2.8080 1.6094 2.0467 8 6 1.5896 1.9755 3.7607 9 7 0.6412 1.5095 4.5437 10 14 2.3412 3.6518 4.0998 11 1 3.3804 3.9437 3.0800 12 1 1.2821 4.6908 4.0380 13 1 2.9581 3.6534 5.4505 14 6 1.7668 -2.1370 1.1134 15 7 2.6991 -2.7399 0.1576 16 7 4.0124 -3.1277 0.4412 17 6 4.5716 -3.6277 -0.6230 18 6 3.5900 -3.5827 -1.7035 19 6 3.6092 -3.9678 -3.0448 20 6 2.4681 -3.7976 -3.8202 21 6 2.4742 -4.2053 -5.2383 22 8 3.4732 -4.6964 -5.7248 23 8 1.3719 -4.0329 -5.9935 24 6 1.3129 -3.2302 -3.2595 25 6 1.2909 -2.8478 -1.9530 26 6 2.4213 -3.0182 -1.1527 27 1 -0.3633 0.6340 0.8088 28 1 -0.3633 0.3835 -0.9535 29 1 -0.3633 -1.0175 0.1446 30 1 1.8933 -0.5139 -0.8900 31 1 3.1201 1.4460 0.1469 32 1 1.8017 1.9121 -0.9544 33 1 1.5617 1.9970 0.8074 34 1 0.3464 -0.0191 2.2767 35 1 1.6163 -0.7879 3.2589 36 1 0.3323 2.0361 5.2976 37 1 0.7433 -2.3075 0.7796 38 1 1.9091 -2.5899 2.0946 39 1 5.5802 -4.0076 -0.6939 40 1 4.4986 -4.4060 -3.4731 41 1 1.4239 -4.3149 -6.9170 42 1 0.4328 -3.0953 -3.8709 43 1 0.3957 -2.4123 -1.5345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736463572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:30 Heat of formation + Delta-G solvation = 17.160743 kcal Electronic energy + Delta-G solvation = -26640.093514 eV Core-core repulsion = 22880.377596 eV Total energy + Delta-G solvation = -3759.715918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41446 -40.19200 -38.01068 -37.00179 -36.21272 -33.29735 -32.52216 -31.28309 -30.22141 -29.68771 -27.64769 -26.37250 -25.05978 -24.09065 -22.85533 -22.35604 -21.20623 -20.75000 -18.87601 -18.33017 -17.49326 -17.20725 -16.51726 -15.89782 -15.69730 -15.69258 -15.01545 -14.87255 -14.52245 -14.30367 -13.95623 -13.74679 -13.46386 -13.36173 -12.92352 -12.50435 -12.32762 -12.04383 -11.89219 -11.65594 -11.46998 -11.31825 -11.29795 -11.02792 -10.87343 -10.82701 -10.78700 -10.69055 -10.47946 -10.33387 -10.13357 -9.62311 -9.12276 -8.84249 -8.48256 -8.04100 -7.50432 -6.11552 -4.08995 0.65264 0.95040 2.37421 2.47592 2.58113 2.87765 3.25497 3.34224 3.38567 3.66443 4.29699 4.37698 4.49796 4.63505 4.77358 4.87901 4.95141 5.11922 5.23182 5.25938 5.44165 5.52192 5.55966 5.63237 5.70214 5.80173 5.84613 6.11105 6.12491 6.14383 6.28125 6.32995 6.39068 6.44169 6.56550 6.58733 6.81890 6.96232 7.00416 7.23851 7.33948 7.66797 7.70694 7.73398 7.94087 8.01318 8.36604 8.95183 9.51623 10.98961 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.003154 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.864418 B = 8874.343314 C = 9309.918618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 C -0.144 4.144 4 N -0.540 5.540 5 C 0.192 3.808 6 C -0.504 4.504 7 H 0.077 0.923 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.293 3.707 15 N -0.374 5.374 16 N -0.225 5.225 17 C 0.070 3.930 18 C -0.200 4.200 19 C 0.041 3.959 20 C -0.185 4.185 21 C 0.535 3.465 22 O -0.525 6.525 23 O -0.514 6.514 24 C -0.025 4.025 25 C -0.149 4.149 26 C 0.165 3.835 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.012 0.988 35 H 0.028 0.972 36 H 0.261 0.739 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.198 0.802 40 H 0.142 0.858 41 H 0.412 0.588 42 H 0.141 0.859 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 -10.755 -16.164 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 C -0.201 4.201 4 N -0.265 5.265 5 C 0.068 3.932 6 C -0.542 4.542 7 H 0.095 0.905 8 C -0.147 4.147 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.083 3.917 15 N -0.160 5.160 16 N -0.036 5.036 17 C -0.128 4.128 18 C -0.208 4.208 19 C 0.020 3.980 20 C -0.188 4.188 21 C 0.381 3.619 22 O -0.416 6.416 23 O -0.326 6.326 24 C -0.046 4.046 25 C -0.171 4.171 26 C 0.045 3.955 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.029 0.971 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.214 0.786 40 H 0.159 0.841 41 H 0.270 0.730 42 H 0.158 0.842 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.659 -10.238 -14.230 17.543 hybrid contribution -0.602 0.465 -1.127 1.360 sum 0.057 -9.773 -15.357 18.203 Atomic orbital electron populations 1.22486 0.98311 1.01044 1.02442 1.21508 0.92056 0.96396 0.92075 1.22227 1.01734 0.95108 1.01043 1.62161 1.60149 0.99200 1.04991 1.19854 0.93714 0.95463 0.84207 1.21405 1.20339 1.00930 1.11549 0.90546 1.24972 0.95287 0.98459 0.95950 1.69952 1.28792 1.38037 1.17020 0.86495 0.79146 0.83852 0.78334 1.19561 1.21122 1.21033 1.22178 0.87397 0.90217 0.91923 1.48958 1.09692 1.50391 1.06938 1.76764 0.91069 1.12133 1.23633 1.25144 0.99625 0.99554 0.88468 1.19827 0.94806 1.11071 0.95140 1.20655 0.96551 0.90530 0.90231 1.18563 0.96764 1.12845 0.90593 1.20761 0.79860 0.74310 0.86948 1.90876 1.34165 1.42525 1.74039 1.84568 1.40681 1.79060 1.28257 1.20793 0.97012 0.92903 0.93910 1.19827 0.97089 1.06687 0.93537 1.19140 0.95512 0.94927 0.85904 0.90414 0.93014 0.93987 0.92553 0.92821 0.95144 0.88307 0.97054 0.95437 0.92947 0.91590 0.87938 0.78575 0.84068 0.73013 0.84163 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.26 37.16 0.31 -2.69 16 2 C 0.09 1.59 2.87 -67.72 -0.19 1.40 16 3 C -0.14 -2.76 7.69 37.15 0.29 -2.48 16 4 N -0.54 -10.77 4.60 -231.97 -1.07 -11.84 16 5 C 0.19 4.51 4.48 -4.97 -0.02 4.49 16 6 C -0.50 -13.03 6.69 -34.44 -0.23 -13.26 16 7 H 0.08 1.99 5.37 -52.49 -0.28 1.71 16 8 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 9 N -0.90 -25.20 13.29 55.43 0.74 -24.46 16 10 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.29 4.99 6.03 -63.32 -0.38 4.61 16 15 N -0.37 -6.07 3.65 -61.64 -0.22 -6.29 16 16 N -0.23 -3.68 12.39 31.89 0.40 -3.29 16 17 C 0.07 0.90 12.29 -15.11 -0.19 0.72 16 18 C -0.20 -2.63 6.35 -105.22 -0.67 -3.30 16 19 C 0.04 0.48 9.65 -38.80 -0.37 0.10 16 20 C -0.18 -2.10 5.87 -105.01 -0.62 -2.72 16 21 C 0.54 5.86 8.26 34.53 0.29 6.14 16 22 O -0.53 -7.03 17.11 -19.26 -0.33 -7.36 16 23 O -0.51 -4.04 12.65 -40.58 -0.51 -4.55 16 24 C -0.03 -0.27 9.53 -39.52 -0.38 -0.65 16 25 C -0.15 -1.83 9.00 -39.85 -0.36 -2.18 16 26 C 0.16 2.37 5.86 -84.12 -0.49 1.87 16 27 H 0.08 1.47 6.49 -51.93 -0.34 1.13 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.62 5.94 -51.93 -0.31 0.31 16 30 H 0.06 0.98 5.93 -51.93 -0.31 0.67 16 31 H 0.05 1.09 7.49 -51.93 -0.39 0.70 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 2.14 5.44 -51.93 -0.28 1.85 16 34 H 0.01 0.28 5.68 -51.93 -0.30 -0.01 16 35 H 0.03 0.70 7.69 -51.93 -0.40 0.30 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.07 1.00 5.79 -51.93 -0.30 0.70 16 38 H 0.10 1.78 7.68 -51.93 -0.40 1.38 16 39 H 0.20 1.69 8.06 -52.48 -0.42 1.26 16 40 H 0.14 1.43 7.63 -52.49 -0.40 1.03 16 41 H 0.41 1.37 9.11 45.56 0.42 1.79 16 42 H 0.14 1.21 7.58 -52.49 -0.40 0.81 16 43 H 0.13 1.48 7.46 -52.49 -0.39 1.09 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -31.46 350.76 -8.34 -39.80 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.48 Total: 3.46 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.12 Total: -6.57 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.16 Total: -45.88 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.84 Total: -11.91 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.46 -8.34 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736463572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.960 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds