Wall clock time and date at job start Tue Mar 31 2020 11:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47106 * 2 1 4 4 N 1.46897 * 109.47036 * 120.00243 * 2 1 3 5 5 C 1.46905 * 110.99785 * 306.70166 * 4 2 1 6 6 C 1.50699 * 109.46930 * 287.16666 * 5 4 2 7 7 H 1.07995 * 119.99931 * 357.81303 * 6 5 4 8 8 C 1.37878 * 119.99492 * 177.80689 * 6 5 4 9 9 N 1.31513 * 120.00547 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99680 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46915 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47157 * 119.99897 * 10 8 6 13 13 H 1.48493 * 109.46953 * 240.00341 * 10 8 6 14 14 C 1.46899 * 111.00137 * 70.65326 * 4 2 1 15 15 N 1.46501 * 109.47202 * 73.76860 * 14 4 2 16 16 N 1.39837 * 125.41087 * 82.97221 * 15 14 4 17 17 C 1.30198 * 110.12833 * 180.02562 * 16 15 14 18 18 C 1.46051 * 107.70527 * 0.02562 * 17 16 15 19 19 C 1.39571 * 133.88842 * 179.97438 * 18 17 16 20 20 C 1.39011 * 119.40489 * 179.23739 * 19 18 17 21 21 C 1.47549 * 119.92291 * 180.22066 * 20 19 18 22 22 O 1.21492 * 119.99848 * 0.43564 * 21 20 19 23 23 O 1.34732 * 119.99963 * 180.43544 * 21 20 19 24 24 C 1.40388 * 120.14808 * 0.65522 * 20 19 18 25 25 C 1.36151 * 120.66469 * 359.61112 * 24 20 19 26 26 C 1.36796 * 125.40424 * 262.67834 * 15 14 4 27 27 H 1.09000 * 109.47018 * 308.09176 * 1 2 3 28 28 H 1.09001 * 109.46704 * 68.08868 * 1 2 3 29 29 H 1.09002 * 109.46894 * 188.08957 * 1 2 3 30 30 H 1.09005 * 109.46672 * 239.99520 * 2 1 3 31 31 H 1.09004 * 109.47298 * 171.78068 * 3 2 1 32 32 H 1.09006 * 109.47162 * 291.77217 * 3 2 1 33 33 H 1.08998 * 109.47495 * 51.78171 * 3 2 1 34 34 H 1.09003 * 109.47216 * 47.17194 * 5 4 2 35 35 H 1.09002 * 109.46743 * 167.17082 * 5 4 2 36 36 H 0.97000 * 120.00056 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.47397 * 313.76256 * 14 4 2 38 38 H 1.09002 * 109.47288 * 193.76161 * 14 4 2 39 39 H 1.08004 * 126.14528 * 180.02562 * 17 16 15 40 40 H 1.07998 * 120.29083 * 0.02562 * 19 18 17 41 41 H 0.96701 * 117.00096 * 179.97438 * 23 21 20 42 42 H 1.07998 * 119.66559 * 179.58216 * 24 20 19 43 43 H 1.07997 * 119.90179 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4223 -0.1251 2.4156 6 6 2.0291 1.2269 2.6895 7 1 2.8080 1.6094 2.0467 8 6 1.5896 1.9755 3.7607 9 7 0.6412 1.5095 4.5437 10 14 2.3412 3.6518 4.0998 11 1 3.3804 3.9437 3.0800 12 1 1.2821 4.6908 4.0380 13 1 2.9581 3.6534 5.4505 14 6 1.7668 -2.1370 1.1134 15 7 2.6991 -2.7399 0.1576 16 7 4.0124 -3.1277 0.4412 17 6 4.5716 -3.6277 -0.6230 18 6 3.5900 -3.5827 -1.7035 19 6 3.6092 -3.9678 -3.0448 20 6 2.4681 -3.7976 -3.8202 21 6 2.4742 -4.2053 -5.2383 22 8 3.4732 -4.6964 -5.7248 23 8 1.3719 -4.0329 -5.9935 24 6 1.3129 -3.2302 -3.2595 25 6 1.2909 -2.8478 -1.9530 26 6 2.4213 -3.0182 -1.1527 27 1 -0.3633 0.6340 0.8088 28 1 -0.3633 0.3835 -0.9535 29 1 -0.3633 -1.0175 0.1446 30 1 1.8933 -0.5139 -0.8900 31 1 3.1201 1.4460 0.1469 32 1 1.8017 1.9121 -0.9544 33 1 1.5617 1.9970 0.8074 34 1 0.3464 -0.0191 2.2767 35 1 1.6163 -0.7879 3.2589 36 1 0.3323 2.0361 5.2976 37 1 0.7433 -2.3075 0.7796 38 1 1.9091 -2.5899 2.0946 39 1 5.5802 -4.0076 -0.6939 40 1 4.4986 -4.4060 -3.4731 41 1 1.4239 -4.3149 -6.9170 42 1 0.4328 -3.0953 -3.8709 43 1 0.3957 -2.4123 -1.5345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736463572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:29 Heat of formation + Delta-G solvation = -3.452723 kcal Electronic energy + Delta-G solvation = -26640.987381 eV Core-core repulsion = 22880.377596 eV Total energy + Delta-G solvation = -3760.609785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.43468 -41.03370 -39.49169 -37.95235 -36.98889 -34.90178 -34.08344 -32.53259 -31.19015 -30.96243 -29.32346 -27.85701 -26.31168 -25.18381 -24.18711 -23.75492 -22.12449 -21.86022 -20.30713 -19.20890 -18.66943 -18.28854 -18.05692 -17.31045 -16.78946 -16.56910 -16.52158 -16.14844 -15.80451 -15.46740 -15.13399 -14.85795 -14.77626 -14.34154 -14.21720 -14.00157 -13.68112 -13.30855 -13.14440 -13.09078 -12.87733 -12.66200 -12.64110 -12.50522 -12.44774 -12.22009 -12.07271 -11.94654 -11.76996 -11.65853 -11.40423 -11.21573 -10.97007 -10.51510 -9.82589 -9.18774 -8.97569 -8.15848 -6.18453 -0.25071 0.00681 1.29457 1.39175 1.42529 1.51935 1.53459 1.62176 2.14676 2.41645 2.74978 3.13178 3.17354 3.42985 3.51826 3.70751 3.98758 4.07503 4.12766 4.14208 4.16401 4.23925 4.33122 4.47314 4.54537 4.76738 4.81670 4.87290 4.89078 4.93513 5.07815 5.18581 5.23219 5.24404 5.25093 5.43897 5.51036 5.62750 5.65432 5.68121 5.73539 5.90443 6.10173 6.30990 6.54303 6.67913 6.91726 7.05893 7.45436 8.94377 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.003154 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.864418 B = 8874.343314 C = 9309.918618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.091 3.909 3 C -0.138 4.138 4 N -0.555 5.555 5 C 0.209 3.791 6 C -0.505 4.505 7 H 0.072 0.928 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.953 3.047 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.285 1.285 14 C 0.301 3.699 15 N -0.391 5.391 16 N -0.277 5.277 17 C 0.088 3.912 18 C -0.211 4.211 19 C 0.044 3.956 20 C -0.190 4.190 21 C 0.543 3.457 22 O -0.553 6.553 23 O -0.504 6.504 24 C -0.009 4.009 25 C -0.160 4.160 26 C 0.149 3.851 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.001 0.999 35 H -0.001 1.001 36 H 0.261 0.739 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.235 0.765 40 H 0.156 0.844 41 H 0.433 0.567 42 H 0.167 0.833 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 -11.107 -19.005 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 C -0.196 4.196 4 N -0.280 5.280 5 C 0.083 3.917 6 C -0.544 4.544 7 H 0.090 0.910 8 C -0.192 4.192 9 N -0.574 5.574 10 Si 0.779 3.221 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.211 1.211 14 C 0.090 3.910 15 N -0.177 5.177 16 N -0.087 5.087 17 C -0.110 4.110 18 C -0.219 4.219 19 C 0.024 3.976 20 C -0.193 4.193 21 C 0.390 3.610 22 O -0.446 6.446 23 O -0.318 6.318 24 C -0.030 4.030 25 C -0.182 4.182 26 C 0.030 3.970 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.251 0.749 40 H 0.173 0.827 41 H 0.295 0.705 42 H 0.184 0.816 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.535 -10.603 -17.124 20.148 hybrid contribution -0.556 0.467 -0.457 0.858 sum -0.021 -10.137 -17.582 20.294 Atomic orbital electron populations 1.22354 0.96751 1.01475 1.02655 1.21522 0.93259 0.95460 0.91505 1.22097 1.00122 0.95928 1.01429 1.61997 1.60580 1.01103 1.04349 1.19450 0.93026 0.94102 0.85077 1.21673 1.19754 1.01830 1.11096 0.91021 1.25693 0.95801 1.01731 0.95991 1.70057 1.30243 1.39392 1.17681 0.85570 0.78481 0.80123 0.77923 1.19092 1.20523 1.21113 1.21984 0.88714 0.88205 0.92085 1.48685 1.09792 1.51725 1.07503 1.76721 0.91731 1.14659 1.25622 1.25835 1.00708 0.97086 0.87404 1.19995 0.94587 1.11538 0.95768 1.20814 0.97339 0.89936 0.89530 1.18774 0.96893 1.12500 0.91143 1.20598 0.79971 0.73593 0.86835 1.90877 1.35337 1.43859 1.74551 1.84511 1.39011 1.78482 1.29796 1.21053 0.97516 0.91020 0.93389 1.20005 0.96847 1.07388 0.93935 1.19510 0.96783 0.95364 0.85296 0.93557 0.90260 0.92505 0.91255 0.94705 0.92344 0.91108 0.98106 0.98333 0.92976 0.89723 0.89418 0.74908 0.82688 0.70510 0.81579 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.43 8.26 71.98 0.59 -4.84 16 2 C 0.09 3.20 2.87 44.91 0.13 3.33 16 3 C -0.14 -5.26 7.69 71.98 0.55 -4.71 16 4 N -0.55 -22.57 4.60 -887.81 -4.09 -26.65 16 5 C 0.21 10.23 4.48 85.56 0.38 10.61 16 6 C -0.51 -26.87 6.69 25.60 0.17 -26.70 16 7 H 0.07 3.82 5.37 -2.91 -0.02 3.81 16 8 C 0.01 0.30 5.46 84.66 0.46 0.77 16 9 N -0.93 -53.72 13.29 21.45 0.28 -53.44 16 10 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 C 0.30 10.42 6.03 170.81 1.03 11.45 16 15 N -0.39 -12.61 3.65 -348.94 -1.27 -13.88 16 16 N -0.28 -9.05 12.39 -53.02 -0.66 -9.71 16 17 C 0.09 2.14 12.29 86.96 1.07 3.21 16 18 C -0.21 -5.17 6.35 -20.25 -0.13 -5.30 16 19 C 0.04 0.92 9.65 22.78 0.22 1.14 16 20 C -0.19 -3.77 5.87 -20.11 -0.12 -3.89 16 21 C 0.54 10.21 8.26 70.28 0.58 10.79 16 22 O -0.55 -13.45 17.11 19.86 0.34 -13.11 16 23 O -0.50 -6.01 12.65 -56.43 -0.71 -6.72 16 24 C -0.01 -0.17 9.53 22.31 0.21 0.05 16 25 C -0.16 -3.51 9.00 22.10 0.20 -3.31 16 26 C 0.15 4.06 5.86 39.36 0.23 4.29 16 27 H 0.05 1.75 6.49 -2.39 -0.02 1.74 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 1.58 5.94 -2.39 -0.01 1.57 16 30 H 0.07 2.30 5.93 -2.38 -0.01 2.29 16 31 H 0.03 1.42 7.49 -2.38 -0.02 1.40 16 32 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.07 3.10 5.44 -2.39 -0.01 3.08 16 34 H 0.00 0.06 5.68 -2.39 -0.01 0.05 16 35 H 0.00 -0.08 7.69 -2.39 -0.02 -0.09 16 36 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.09 2.54 5.79 -2.39 -0.01 2.53 16 38 H 0.09 3.22 7.68 -2.39 -0.02 3.20 16 39 H 0.23 3.47 8.06 -2.91 -0.02 3.44 16 40 H 0.16 2.75 7.63 -2.91 -0.02 2.73 16 41 H 0.43 1.26 9.11 -74.06 -0.67 0.59 16 42 H 0.17 2.12 7.58 -2.91 -0.02 2.10 16 43 H 0.14 2.77 7.46 -2.91 -0.02 2.75 16 Total: -1.00 -69.56 350.76 1.90 -67.66 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.39 Total: 13.47 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.59 Total: -3.10 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -5.73 Total: -103.69 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.37 Total: -19.83 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.56 1.90 -67.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736463572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.207 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds