Wall clock time and date at job start Tue Mar 31 2020 11:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47226 * 2 1 4 4 N 1.46906 * 109.47094 * 120.00366 * 2 1 3 5 5 C 1.46892 * 110.99738 * 161.88818 * 4 2 1 6 6 C 1.50695 * 109.47627 * 288.12578 * 5 4 2 7 7 H 1.08002 * 119.99814 * 4.82724 * 6 5 4 8 8 C 1.37878 * 120.00160 * 184.83232 * 6 5 4 9 9 N 1.31511 * 120.00129 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99828 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47219 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46920 * 119.99986 * 10 8 6 13 13 H 1.48497 * 109.46999 * 239.99764 * 10 8 6 14 14 C 1.46902 * 110.99611 * 285.84373 * 4 2 1 15 15 N 1.46494 * 109.46907 * 85.20926 * 14 4 2 16 16 N 1.40273 * 126.57864 * 73.14133 * 15 14 4 17 17 C 1.30154 * 107.75109 * 179.97438 * 16 15 14 18 18 C 1.47905 * 125.46196 * 179.72862 * 17 16 15 19 19 C 1.39529 * 120.14046 * 359.72525 * 18 17 16 20 20 C 1.37977 * 119.85629 * 179.73947 * 19 18 17 21 21 C 1.38342 * 120.13845 * 0.53624 * 20 19 18 22 22 C 1.38354 * 120.28766 * 359.74160 * 21 20 19 23 23 C 1.37973 * 120.13758 * 359.97358 * 22 21 20 24 24 O 1.35085 * 109.07485 * 359.97438 * 17 16 15 25 25 C 1.34325 * 108.85822 * 0.02562 * 24 17 16 26 26 O 1.21693 * 126.26277 * 179.97438 * 25 24 17 27 27 H 1.09001 * 109.46789 * 308.05226 * 1 2 3 28 28 H 1.08998 * 109.47369 * 68.04423 * 1 2 3 29 29 H 1.09003 * 109.47274 * 188.05514 * 1 2 3 30 30 H 1.08998 * 109.46701 * 239.99877 * 2 1 3 31 31 H 1.08999 * 109.47273 * 168.91124 * 3 2 1 32 32 H 1.08998 * 109.47218 * 288.90763 * 3 2 1 33 33 H 1.08997 * 109.47281 * 48.90814 * 3 2 1 34 34 H 1.09002 * 109.47103 * 48.13054 * 5 4 2 35 35 H 1.09001 * 109.47301 * 168.12321 * 5 4 2 36 36 H 0.96996 * 119.99832 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47348 * 325.20936 * 14 4 2 38 38 H 1.08995 * 109.46694 * 205.20935 * 14 4 2 39 39 H 1.08004 * 120.07655 * 0.02562 * 19 18 17 40 40 H 1.08005 * 119.92952 * 180.25184 * 20 19 18 41 41 H 1.08007 * 119.85788 * 179.75647 * 21 20 19 42 42 H 1.07993 * 119.92975 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.07110 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4240 -1.0927 1.0398 6 6 3.5130 -2.2339 0.0596 7 1 2.6272 -2.5717 -0.4577 8 6 4.7253 -2.8467 -0.1768 9 7 5.8041 -2.4350 0.4527 10 14 4.8354 -4.2617 -1.3913 11 1 3.4906 -4.5309 -1.9610 12 1 5.7742 -3.9036 -2.4848 13 1 5.3287 -5.4760 -0.6932 14 6 1.8421 0.1394 2.3970 15 7 0.4882 -0.0468 2.9246 16 7 0.0026 -1.1758 3.6008 17 6 -1.2428 -0.9508 3.9051 18 6 -2.1344 -1.8895 4.6203 19 6 -1.6590 -3.1378 5.0234 20 6 -2.4943 -4.0067 5.6950 21 6 -3.8038 -3.6469 5.9591 22 6 -4.2829 -2.4128 5.5570 23 6 -3.4561 -1.5325 4.8898 24 8 -1.5919 0.2752 3.4580 25 6 -0.5310 0.8355 2.8540 26 8 -0.4953 1.9368 2.3376 27 1 -0.3633 0.6335 0.8093 28 1 -0.3634 0.3842 -0.9531 29 1 -0.3634 -1.0175 0.1440 30 1 1.8933 -0.5139 -0.8900 31 1 3.1119 1.4488 0.1976 32 1 1.8472 1.8960 -0.9722 33 1 1.5244 2.0101 0.7745 34 1 4.0025 -0.2474 0.6668 35 1 3.8235 -1.4093 2.0033 36 1 6.6569 -2.8659 0.2861 37 1 1.9896 1.1875 2.1365 38 1 2.5703 -0.1528 3.1536 39 1 -0.6381 -3.4216 4.8143 40 1 -2.1264 -4.9717 6.0112 41 1 -4.4548 -4.3321 6.4817 42 1 -5.3060 -2.1377 5.7665 43 1 -3.8311 -0.5693 4.5767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739841339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:41 Heat of formation + Delta-G solvation = 44.637049 kcal Electronic energy + Delta-G solvation = -26768.834828 eV Core-core repulsion = 23010.310372 eV Total energy + Delta-G solvation = -3758.524456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.23848 -39.40025 -38.44264 -37.44569 -35.53695 -32.95192 -32.79728 -31.33837 -31.09454 -30.01058 -27.38015 -26.74122 -25.28317 -23.96784 -23.19569 -22.21946 -22.02191 -21.53682 -19.42421 -18.07909 -17.49638 -16.94135 -16.41182 -16.25157 -16.07765 -15.43029 -15.20307 -14.89298 -14.64685 -14.24006 -14.11241 -13.74496 -13.72696 -13.33180 -13.03912 -12.79742 -12.37405 -12.16808 -12.06370 -11.85437 -11.69371 -11.55813 -11.35581 -11.23859 -11.00006 -10.83310 -10.77587 -10.62505 -10.55518 -10.01443 -9.89821 -9.70386 -9.36072 -9.27772 -8.52639 -8.42755 -7.52122 -6.09244 -4.10262 0.45597 1.08753 1.82358 2.05095 2.37241 2.59341 3.28041 3.35850 3.40965 3.52272 4.08102 4.37943 4.61146 4.64160 4.67299 4.83963 4.90543 5.08637 5.20191 5.27277 5.37394 5.46005 5.48357 5.58009 5.62756 5.70885 5.76010 5.87632 6.02527 6.07682 6.11470 6.16074 6.18654 6.20855 6.31418 6.46362 6.56931 6.66705 6.73733 7.09028 7.19871 7.52785 7.67812 7.73349 7.94050 8.05887 8.38009 8.96140 9.53871 11.01326 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.003827 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.150751 B = 7314.310855 C = 8823.773021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 C -0.187 4.187 4 N -0.536 5.536 5 C 0.198 3.802 6 C -0.504 4.504 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.297 3.703 15 N -0.427 5.427 16 N -0.222 5.222 17 C 0.256 3.744 18 C -0.022 4.022 19 C -0.067 4.067 20 C -0.121 4.121 21 C -0.098 4.098 22 C -0.124 4.124 23 C -0.081 4.081 24 O -0.275 6.275 25 C 0.606 3.394 26 O -0.490 6.490 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.000 1.000 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.187 0.735 10.813 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 C -0.246 4.246 4 N -0.261 5.261 5 C 0.074 3.926 6 C -0.543 4.543 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.089 3.911 15 N -0.259 5.259 16 N -0.051 5.051 17 C 0.032 3.968 18 C -0.024 4.024 19 C -0.086 4.086 20 C -0.139 4.139 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.101 4.101 24 O -0.172 6.172 25 C 0.358 3.642 26 O -0.373 6.373 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.018 0.982 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.561 0.481 10.555 19.645 hybrid contribution 0.164 0.421 -0.949 1.051 sum -16.397 0.902 9.606 19.025 Atomic orbital electron populations 1.22140 0.96201 1.01498 1.01280 1.21649 0.94094 0.92115 0.94876 1.22498 1.01643 0.98463 1.01963 1.61838 1.25273 1.38731 1.00292 1.19796 0.79223 0.95383 0.98188 1.21116 0.94204 1.15764 1.23215 0.91807 1.24954 0.95614 0.97402 0.96463 1.69948 0.99371 1.41933 1.42470 0.86431 0.78074 0.82051 0.80815 1.19687 1.21100 1.20976 1.22334 0.76525 0.98318 0.93956 1.50772 1.13380 1.11054 1.50728 1.77550 1.07699 1.08732 1.11104 1.23808 0.91250 0.83639 0.98081 1.17289 0.91883 0.92101 1.01135 1.21289 1.01078 0.91187 0.95084 1.21141 0.93755 0.99940 0.99025 1.21402 0.95765 0.96382 0.98182 1.21082 1.00024 0.94041 0.99010 1.21264 0.91840 1.00204 0.96835 1.85092 1.39151 1.28898 1.64080 1.19282 0.78962 0.85949 0.80009 1.91174 1.80817 1.17249 1.48086 0.92798 0.93090 0.92782 0.88594 0.92042 0.92488 0.92239 0.98192 0.94507 0.92883 0.88866 0.88119 0.83957 0.84855 0.85441 0.85154 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.77 37.16 0.33 -2.48 16 2 C 0.08 1.59 2.76 -67.71 -0.19 1.40 16 3 C -0.19 -3.28 8.05 37.15 0.30 -2.98 16 4 N -0.54 -11.28 4.46 -231.98 -1.03 -12.32 16 5 C 0.20 4.86 4.61 -4.98 -0.02 4.84 16 6 C -0.50 -13.70 8.43 -34.44 -0.29 -13.99 16 7 H 0.06 1.76 7.51 -52.49 -0.39 1.36 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 10 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.30 5.46 6.01 -63.32 -0.38 5.08 16 15 N -0.43 -7.59 3.24 -68.30 -0.22 -7.81 16 16 N -0.22 -3.75 12.16 31.97 0.39 -3.36 16 17 C 0.26 3.75 7.94 -14.31 -0.11 3.64 16 18 C -0.02 -0.25 5.87 -104.98 -0.62 -0.87 16 19 C -0.07 -0.69 9.68 -39.20 -0.38 -1.07 16 20 C -0.12 -0.96 10.03 -39.64 -0.40 -1.36 16 21 C -0.10 -0.68 10.04 -39.50 -0.40 -1.07 16 22 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 23 C -0.08 -0.76 9.71 -39.20 -0.38 -1.14 16 24 O -0.28 -4.37 10.43 -20.74 -0.22 -4.59 16 25 C 0.61 10.79 7.09 54.15 0.38 11.17 16 26 O -0.49 -9.50 15.63 -19.00 -0.30 -9.79 16 27 H 0.05 1.00 3.19 -51.93 -0.17 0.84 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.10 2.06 6.95 -51.93 -0.36 1.69 16 31 H 0.06 1.11 6.71 -51.93 -0.35 0.77 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.04 5.73 -51.93 -0.30 0.74 16 34 H 0.00 0.01 6.66 -51.93 -0.35 -0.34 16 35 H 0.04 0.96 7.62 -51.93 -0.40 0.57 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.09 1.64 4.79 -51.93 -0.25 1.39 16 38 H 0.10 1.78 7.48 -51.93 -0.39 1.39 16 39 H 0.14 1.54 7.82 -52.48 -0.41 1.13 16 40 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 41 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 1.14 7.89 -52.49 -0.41 0.73 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -30.84 353.83 -8.43 -39.27 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.44 Total: 0.67 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.65 Total: 1.35 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.13 Total: -48.53 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.51 Total: -14.38 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.84 -8.43 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.905 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds