Wall clock time and date at job start Tue Mar 31 2020 11:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47226 * 2 1 4 4 N 1.46906 * 109.47094 * 120.00366 * 2 1 3 5 5 C 1.46892 * 110.99738 * 161.88818 * 4 2 1 6 6 C 1.50695 * 109.47627 * 288.12578 * 5 4 2 7 7 H 1.08002 * 119.99814 * 4.82724 * 6 5 4 8 8 C 1.37878 * 120.00160 * 184.83232 * 6 5 4 9 9 N 1.31511 * 120.00129 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99828 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47219 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46920 * 119.99986 * 10 8 6 13 13 H 1.48497 * 109.46999 * 239.99764 * 10 8 6 14 14 C 1.46902 * 110.99611 * 285.84373 * 4 2 1 15 15 N 1.46494 * 109.46907 * 85.20926 * 14 4 2 16 16 N 1.40273 * 126.57864 * 73.14133 * 15 14 4 17 17 C 1.30154 * 107.75109 * 179.97438 * 16 15 14 18 18 C 1.47905 * 125.46196 * 179.72862 * 17 16 15 19 19 C 1.39529 * 120.14046 * 359.72525 * 18 17 16 20 20 C 1.37977 * 119.85629 * 179.73947 * 19 18 17 21 21 C 1.38342 * 120.13845 * 0.53624 * 20 19 18 22 22 C 1.38354 * 120.28766 * 359.74160 * 21 20 19 23 23 C 1.37973 * 120.13758 * 359.97358 * 22 21 20 24 24 O 1.35085 * 109.07485 * 359.97438 * 17 16 15 25 25 C 1.34325 * 108.85822 * 0.02562 * 24 17 16 26 26 O 1.21693 * 126.26277 * 179.97438 * 25 24 17 27 27 H 1.09001 * 109.46789 * 308.05226 * 1 2 3 28 28 H 1.08998 * 109.47369 * 68.04423 * 1 2 3 29 29 H 1.09003 * 109.47274 * 188.05514 * 1 2 3 30 30 H 1.08998 * 109.46701 * 239.99877 * 2 1 3 31 31 H 1.08999 * 109.47273 * 168.91124 * 3 2 1 32 32 H 1.08998 * 109.47218 * 288.90763 * 3 2 1 33 33 H 1.08997 * 109.47281 * 48.90814 * 3 2 1 34 34 H 1.09002 * 109.47103 * 48.13054 * 5 4 2 35 35 H 1.09001 * 109.47301 * 168.12321 * 5 4 2 36 36 H 0.96996 * 119.99832 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47348 * 325.20936 * 14 4 2 38 38 H 1.08995 * 109.46694 * 205.20935 * 14 4 2 39 39 H 1.08004 * 120.07655 * 0.02562 * 19 18 17 40 40 H 1.08005 * 119.92952 * 180.25184 * 20 19 18 41 41 H 1.08007 * 119.85788 * 179.75647 * 21 20 19 42 42 H 1.07993 * 119.92975 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.07110 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4240 -1.0927 1.0398 6 6 3.5130 -2.2339 0.0596 7 1 2.6272 -2.5717 -0.4577 8 6 4.7253 -2.8467 -0.1768 9 7 5.8041 -2.4350 0.4527 10 14 4.8354 -4.2617 -1.3913 11 1 3.4906 -4.5309 -1.9610 12 1 5.7742 -3.9036 -2.4848 13 1 5.3287 -5.4760 -0.6932 14 6 1.8421 0.1394 2.3970 15 7 0.4882 -0.0468 2.9246 16 7 0.0026 -1.1758 3.6008 17 6 -1.2428 -0.9508 3.9051 18 6 -2.1344 -1.8895 4.6203 19 6 -1.6590 -3.1378 5.0234 20 6 -2.4943 -4.0067 5.6950 21 6 -3.8038 -3.6469 5.9591 22 6 -4.2829 -2.4128 5.5570 23 6 -3.4561 -1.5325 4.8898 24 8 -1.5919 0.2752 3.4580 25 6 -0.5310 0.8355 2.8540 26 8 -0.4953 1.9368 2.3376 27 1 -0.3633 0.6335 0.8093 28 1 -0.3634 0.3842 -0.9531 29 1 -0.3634 -1.0175 0.1440 30 1 1.8933 -0.5139 -0.8900 31 1 3.1119 1.4488 0.1976 32 1 1.8472 1.8960 -0.9722 33 1 1.5244 2.0101 0.7745 34 1 4.0025 -0.2474 0.6668 35 1 3.8235 -1.4093 2.0033 36 1 6.6569 -2.8659 0.2861 37 1 1.9896 1.1875 2.1365 38 1 2.5703 -0.1528 3.1536 39 1 -0.6381 -3.4216 4.8143 40 1 -2.1264 -4.9717 6.0112 41 1 -4.4548 -4.3321 6.4817 42 1 -5.3060 -2.1377 5.7665 43 1 -3.8311 -0.5693 4.5767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739841339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:41 Heat of formation + Delta-G solvation = 24.833401 kcal Electronic energy + Delta-G solvation = -26769.693579 eV Core-core repulsion = 23010.310372 eV Total energy + Delta-G solvation = -3759.383206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.55280 -40.29564 -39.80012 -38.91449 -36.91770 -34.93890 -33.89456 -32.70232 -31.97436 -31.25027 -29.07849 -28.23683 -26.83928 -25.16870 -24.21179 -24.10487 -23.01892 -22.57995 -20.96158 -19.24034 -18.79270 -18.38906 -18.10102 -17.59785 -17.19852 -16.96948 -16.48120 -16.28010 -16.02813 -15.62306 -15.08689 -14.98587 -14.84328 -14.50916 -14.37146 -14.17197 -13.81255 -13.77368 -13.33798 -13.27932 -13.16285 -12.82163 -12.69494 -12.64449 -12.50791 -12.38652 -12.24706 -12.14393 -11.97697 -11.81261 -11.56499 -11.37659 -10.74291 -10.60595 -9.94004 -9.53805 -9.23159 -8.20619 -6.29077 -0.42215 0.43303 0.45788 0.93372 1.08471 1.40183 1.40827 1.41947 1.54320 2.39653 2.81708 2.82723 3.11304 3.22767 3.52472 3.91950 3.92973 3.99402 4.03759 4.12118 4.17122 4.23281 4.32792 4.37251 4.48504 4.56488 4.58877 4.65217 4.70822 4.84129 4.88960 4.95996 5.00495 5.08499 5.10683 5.26325 5.35995 5.38465 5.47208 5.54529 5.63897 5.94793 5.98536 6.16283 6.20444 6.42501 6.45469 6.83276 7.39301 8.89792 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.003827 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.150751 B = 7314.310855 C = 8823.773021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.080 3.920 3 C -0.176 4.176 4 N -0.546 5.546 5 C 0.216 3.784 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.964 3.036 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.303 3.697 15 N -0.432 5.432 16 N -0.260 5.260 17 C 0.277 3.723 18 C -0.054 4.054 19 C -0.078 4.078 20 C -0.122 4.122 21 C -0.084 4.084 22 C -0.119 4.119 23 C -0.084 4.084 24 O -0.271 6.271 25 C 0.605 3.395 26 O -0.509 6.509 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.062 0.938 34 H -0.014 1.014 35 H 0.015 0.985 36 H 0.265 0.735 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.128 0.872 40 H 0.156 0.844 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.734 -0.406 11.423 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 C -0.234 4.234 4 N -0.271 5.271 5 C 0.091 3.909 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.789 3.211 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.204 1.204 14 C 0.094 3.906 15 N -0.264 5.264 16 N -0.088 5.088 17 C 0.055 3.945 18 C -0.057 4.057 19 C -0.098 4.098 20 C -0.140 4.140 21 C -0.102 4.102 22 C -0.137 4.137 23 C -0.104 4.104 24 O -0.168 6.168 25 C 0.358 3.642 26 O -0.394 6.394 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.004 0.996 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.146 0.854 40 H 0.173 0.827 41 H 0.181 0.819 42 H 0.180 0.820 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.132 -0.664 11.181 22.170 hybrid contribution 0.771 0.701 -1.000 1.444 sum -18.361 0.038 10.182 20.995 Atomic orbital electron populations 1.22029 0.94960 1.00686 1.02319 1.21645 0.94948 0.92881 0.93369 1.22371 1.00802 0.97122 1.03129 1.61718 1.23110 1.40444 1.01845 1.19397 0.81061 0.94216 0.96256 1.21359 0.94059 1.16561 1.23692 0.92642 1.25756 0.95226 0.99854 0.98134 1.70050 0.99888 1.43220 1.43780 0.85413 0.78125 0.78904 0.78628 1.19342 1.20363 1.20410 1.22236 0.77137 0.98293 0.92899 1.50530 1.13119 1.11637 1.51077 1.77585 1.08999 1.08797 1.13404 1.24595 0.90957 0.82987 0.95973 1.17484 0.92633 0.92280 1.03278 1.21325 1.01078 0.91413 0.96014 1.21447 0.94098 1.00294 0.98145 1.21869 0.95428 0.96501 0.96407 1.21481 1.01065 0.93592 0.97541 1.21449 0.91043 1.01002 0.96892 1.85091 1.38338 1.29487 1.63852 1.19254 0.79232 0.85762 0.79975 1.91146 1.81324 1.17892 1.49004 0.92982 0.91021 0.94164 0.90689 0.93042 0.90607 0.91955 0.99626 0.96724 0.92617 0.88000 0.88092 0.85432 0.82675 0.81918 0.82016 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 8.77 71.98 0.63 -4.56 16 2 C 0.08 3.18 2.76 44.91 0.12 3.30 16 3 C -0.18 -6.17 8.05 71.98 0.58 -5.59 16 4 N -0.55 -23.77 4.46 -887.85 -3.96 -27.73 16 5 C 0.22 11.04 4.61 85.56 0.39 11.44 16 6 C -0.52 -28.88 8.43 25.60 0.22 -28.66 16 7 H 0.06 3.12 7.51 -2.91 -0.02 3.10 16 8 C 0.01 0.49 5.46 84.66 0.46 0.96 16 9 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 10 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 C 0.30 11.53 6.01 170.81 1.03 12.56 16 15 N -0.43 -15.80 3.24 -600.28 -1.95 -17.74 16 16 N -0.26 -9.06 12.16 -167.02 -2.03 -11.09 16 17 C 0.28 8.26 7.94 87.50 0.69 8.95 16 18 C -0.05 -1.23 5.87 -20.09 -0.12 -1.35 16 19 C -0.08 -1.58 9.68 22.52 0.22 -1.36 16 20 C -0.12 -1.63 10.03 22.23 0.22 -1.40 16 21 C -0.08 -0.80 10.04 22.32 0.22 -0.58 16 22 C -0.12 -1.29 10.03 22.23 0.22 -1.07 16 23 C -0.08 -1.41 9.71 22.52 0.22 -1.19 16 24 O -0.27 -8.63 10.43 12.58 0.13 -8.50 16 25 C 0.61 21.80 7.09 129.76 0.92 22.72 16 26 O -0.51 -19.75 15.63 18.81 0.29 -19.45 16 27 H 0.05 1.93 3.19 -2.39 -0.01 1.92 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 3.29 6.95 -2.39 -0.02 3.27 16 31 H 0.05 1.89 6.71 -2.39 -0.02 1.88 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 2.15 5.73 -2.39 -0.01 2.14 16 34 H -0.01 -0.74 6.66 -2.39 -0.02 -0.76 16 35 H 0.01 0.81 7.62 -2.39 -0.02 0.79 16 36 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.10 3.67 4.79 -2.39 -0.01 3.65 16 38 H 0.10 3.77 7.48 -2.39 -0.02 3.75 16 39 H 0.13 2.88 7.82 -2.91 -0.02 2.86 16 40 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 42 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 43 H 0.14 2.14 7.89 -2.91 -0.02 2.11 16 Total: -1.00 -67.65 353.83 1.87 -65.78 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.04 Total: 12.52 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.04 Total: 14.15 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -7.65 Total: -110.55 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: 0.43 Total: -27.95 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.65 1.87 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.610 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds