Wall clock time and date at job start Tue Mar 31 2020 11:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46646 * 2 1 4 4 N 1.46895 * 109.47429 * 119.99477 * 2 1 3 5 5 C 1.46902 * 110.99770 * 73.52622 * 4 2 1 6 6 C 1.50698 * 109.46899 * 66.04952 * 5 4 2 7 7 H 1.08002 * 120.00227 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00141 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00258 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99689 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47353 * 90.00364 * 10 8 6 12 12 H 1.48501 * 109.47268 * 209.99988 * 10 8 6 13 13 H 1.48504 * 109.47324 * 330.00167 * 10 8 6 14 14 C 1.46904 * 111.00210 * 309.57830 * 4 2 1 15 15 N 1.46500 * 109.47190 * 208.26330 * 14 4 2 16 16 C 1.34541 * 124.46028 * 259.92809 * 15 14 4 17 17 O 1.21459 * 125.75004 * 359.74475 * 16 15 14 18 18 C 1.47775 * 108.48722 * 180.12044 * 16 15 14 19 19 C 1.38400 * 134.31084 * 179.88480 * 18 16 15 20 20 C 1.38855 * 119.93818 * 179.67562 * 19 18 16 21 21 C 1.37813 * 120.60854 * 0.02562 * 20 19 18 22 22 C 1.39663 * 120.37787 * 359.97438 * 21 20 19 23 23 N 1.38702 * 120.25160 * 179.97438 * 22 21 20 24 24 C 1.39395 * 119.49639 * 0.02562 * 22 21 20 25 25 C 1.34515 * 124.45653 * 79.58339 * 15 14 4 26 26 O 1.21521 * 125.66550 * 0.06112 * 25 15 14 27 27 H 1.08994 * 109.47546 * 305.57228 * 1 2 3 28 28 H 1.09001 * 109.47093 * 65.57581 * 1 2 3 29 29 H 1.09003 * 109.46355 * 185.57210 * 1 2 3 30 30 H 1.08996 * 109.47617 * 240.00304 * 2 1 3 31 31 H 1.09002 * 109.46792 * 174.10649 * 3 2 1 32 32 H 1.08998 * 109.47006 * 294.09942 * 3 2 1 33 33 H 1.08995 * 109.47165 * 54.10411 * 3 2 1 34 34 H 1.09001 * 109.47005 * 186.04471 * 5 4 2 35 35 H 1.09001 * 109.47379 * 306.05020 * 5 4 2 36 36 H 0.97000 * 119.99995 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47393 * 88.26239 * 14 4 2 38 38 H 1.09000 * 109.47062 * 328.26585 * 14 4 2 39 39 H 1.08004 * 120.03439 * 359.65302 * 19 18 16 40 40 H 1.07994 * 119.69158 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.81258 * 179.97438 * 21 20 19 42 42 H 0.97000 * 120.00271 * 180.02562 * 23 22 21 43 43 H 0.97004 * 120.00097 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6923 1.1994 5 6 1.8286 -2.1443 1.0841 6 6 2.7024 -2.6797 -0.0208 7 1 3.3360 -2.0085 -0.5816 8 6 2.6929 -4.0266 -0.3159 9 7 3.4551 -4.4938 -1.2805 10 14 1.5975 -5.1876 0.6544 11 1 0.2720 -5.2867 -0.0077 12 1 2.2258 -6.5321 0.7078 13 1 1.4240 -4.6671 2.0343 14 6 1.3715 -0.1707 2.4101 15 7 2.2718 -0.3324 3.5544 16 6 2.1799 -1.3218 4.4615 17 8 1.3479 -2.2067 4.4646 18 6 3.2563 -1.1450 5.4584 19 6 3.6469 -1.8358 6.5923 20 6 4.7400 -1.3981 7.3282 21 6 5.4436 -0.2782 6.9410 22 6 5.0664 0.4335 5.8000 23 7 5.7761 1.5606 5.4130 24 6 3.9705 0.0030 5.0538 25 6 3.3031 0.4851 3.8329 26 8 3.6293 1.4601 3.1850 27 1 -0.3634 0.5978 0.8358 28 1 -0.3633 0.4249 -0.9357 29 1 -0.3632 -1.0229 0.0998 30 1 1.8934 -0.5137 -0.8899 31 1 3.1248 1.4444 0.1055 32 1 1.7654 1.9250 -0.9381 33 1 1.5929 1.9859 0.8325 34 1 2.0994 -2.6224 2.0255 35 1 0.7839 -2.3563 0.8562 36 1 3.4487 -5.4413 -1.4878 37 1 0.4483 -0.7204 2.5936 38 1 1.1437 0.8865 2.2734 39 1 3.1017 -2.7142 6.9047 40 1 5.0410 -1.9399 8.2126 41 1 6.2916 0.0511 7.5232 42 1 5.5107 2.0524 4.6202 43 1 6.5378 1.8571 5.9353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739847020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:37 Heat of formation + Delta-G solvation = -5.048256 kcal Electronic energy + Delta-G solvation = -27461.731841 eV Core-core repulsion = 23701.052869 eV Total energy + Delta-G solvation = -3760.678972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.01145 -38.91057 -38.24805 -37.59808 -35.53882 -34.58997 -32.71165 -32.01267 -30.56921 -28.95656 -27.81019 -26.68459 -25.21548 -24.91440 -22.51032 -22.28784 -21.69389 -19.82862 -18.85710 -17.90311 -17.38827 -16.73712 -16.67504 -16.49460 -15.96713 -15.52267 -14.97832 -14.57336 -14.51440 -14.30716 -14.04319 -13.77825 -13.63579 -13.40194 -13.12536 -13.04228 -12.43196 -12.36391 -12.32864 -12.05080 -11.71230 -11.59277 -11.16623 -10.99911 -10.76062 -10.72431 -10.38901 -10.33496 -10.20434 -9.97733 -9.79517 -9.52001 -9.27271 -9.14946 -8.54607 -7.90237 -7.54582 -6.03114 -4.00530 0.18846 1.16788 2.20165 2.65354 3.31409 3.32455 3.40346 3.50361 3.54103 3.64821 3.80955 4.46478 4.46957 4.67946 4.78334 4.92016 5.07075 5.21033 5.29696 5.34189 5.40576 5.48852 5.53355 5.64463 5.71716 5.83940 5.89768 6.02770 6.03793 6.14654 6.15513 6.25281 6.42205 6.43206 6.70227 6.75579 6.94563 6.98215 7.04980 7.11449 7.46180 7.53997 7.59865 7.82862 7.90994 8.09708 8.64104 9.04406 9.58849 11.09522 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.005205 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.944582 B = 5378.033811 C = 6482.983118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 C -0.138 4.138 4 N -0.531 5.531 5 C 0.160 3.840 6 C -0.508 4.508 7 H 0.081 0.919 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.865 3.135 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.261 1.261 14 C 0.272 3.728 15 N -0.561 5.561 16 C 0.572 3.428 17 O -0.463 6.463 18 C -0.082 4.082 19 C -0.106 4.106 20 C -0.049 4.049 21 C -0.179 4.179 22 C 0.292 3.708 23 N -0.856 5.856 24 C -0.238 4.238 25 C 0.592 3.408 26 O -0.477 6.477 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.029 0.971 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.413 0.587 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 12.089 17.318 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 C -0.196 4.196 4 N -0.256 5.256 5 C 0.034 3.966 6 C -0.546 4.546 7 H 0.099 0.901 8 C -0.130 4.130 9 N -0.538 5.538 10 Si 0.692 3.308 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.185 1.185 14 C 0.062 3.938 15 N -0.304 5.304 16 C 0.360 3.640 17 O -0.335 6.335 18 C -0.086 4.086 19 C -0.127 4.127 20 C -0.068 4.068 21 C -0.202 4.202 22 C 0.181 3.819 23 N -0.393 5.393 24 C -0.248 4.248 25 C 0.382 3.618 26 O -0.349 6.349 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.009 0.991 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.244 0.756 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.648 12.067 16.811 20.760 hybrid contribution -1.109 -0.791 0.183 1.375 sum 0.538 11.276 16.995 20.402 Atomic orbital electron populations 1.22520 0.98377 1.02045 1.01321 1.21633 0.91736 0.94452 0.94423 1.21838 1.02299 0.95289 1.00134 1.61779 1.56616 1.06960 1.00195 1.20294 0.95335 0.82618 0.98316 1.20972 1.24261 0.93534 1.15876 0.90089 1.24849 0.95346 0.97948 0.94856 1.69891 1.39473 1.14184 1.30243 0.86985 0.81070 0.80821 0.81888 1.20254 1.21105 1.18483 1.22081 0.88240 1.01157 0.82305 1.46679 1.30705 1.26950 1.26026 1.18411 0.83813 0.80439 0.81328 1.90807 1.37214 1.31438 1.73998 1.20413 0.96045 0.95990 0.96124 1.20539 0.97843 1.00489 0.93848 1.21090 0.92973 0.94456 0.98326 1.20875 1.03403 0.98389 0.97501 1.17175 0.87690 0.86257 0.90791 1.42511 1.34599 1.28968 1.33209 1.19911 1.01706 1.02221 1.00932 1.17877 0.78882 0.81776 0.83237 1.90722 1.64880 1.25302 1.54036 0.93562 0.92360 0.92062 0.87676 0.91707 0.92983 0.93694 0.95334 0.99069 0.92694 0.91189 0.88567 0.84545 0.84394 0.84656 0.75612 0.77008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 8.51 37.16 0.32 -2.68 16 2 C 0.09 1.63 2.74 -67.71 -0.19 1.45 16 3 C -0.14 -2.25 9.13 37.16 0.34 -1.91 16 4 N -0.53 -11.38 4.52 -231.96 -1.05 -12.43 16 5 C 0.16 4.03 3.53 -4.98 -0.02 4.02 16 6 C -0.51 -14.72 8.87 -34.44 -0.31 -15.03 16 7 H 0.08 2.54 7.47 -52.49 -0.39 2.15 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 10 Si 0.87 22.45 27.47 -169.99 -4.67 17.78 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 13 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 14 C 0.27 5.03 4.06 -63.31 -0.26 4.77 16 15 N -0.56 -10.30 2.86 -121.11 -0.35 -10.65 16 16 C 0.57 10.55 7.51 -12.47 -0.09 10.45 16 17 O -0.46 -9.69 17.08 5.40 0.09 -9.59 16 18 C -0.08 -1.23 6.40 -104.84 -0.67 -1.90 16 19 C -0.11 -1.24 10.08 -39.29 -0.40 -1.63 16 20 C -0.05 -0.43 10.02 -39.51 -0.40 -0.82 16 21 C -0.18 -1.53 9.89 -39.20 -0.39 -1.92 16 22 C 0.29 3.26 6.78 -83.79 -0.57 2.69 16 23 N -0.86 -7.59 9.04 32.46 0.29 -7.30 16 24 C -0.24 -3.48 6.30 -104.71 -0.66 -4.14 16 25 C 0.59 10.21 7.97 -12.71 -0.10 10.11 16 26 O -0.48 -8.61 16.69 5.35 0.09 -8.52 16 27 H 0.05 0.66 6.87 -51.93 -0.36 0.31 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.10 6.56 -51.93 -0.34 0.76 16 30 H 0.11 2.29 6.60 -51.93 -0.34 1.95 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.68 6.61 -51.93 -0.34 0.34 16 34 H 0.03 0.77 6.11 -51.93 -0.32 0.46 16 35 H -0.01 -0.21 5.93 -51.93 -0.31 -0.51 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.07 1.29 7.39 -51.93 -0.38 0.91 16 38 H 0.10 1.58 5.58 -51.93 -0.29 1.29 16 39 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.41 4.19 7.67 -40.82 -0.31 3.88 16 43 H 0.40 2.19 8.84 -40.82 -0.36 1.83 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -34.84 352.17 -8.44 -43.28 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.45 Total: 3.84 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -3.48 Total: 5.50 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.33 Total: -57.58 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.18 Total: -18.12 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.84 -8.44 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739847020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.232 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds