Wall clock time and date at job start Tue Mar 31 2020 11:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46646 * 2 1 4 4 N 1.46895 * 109.47429 * 119.99477 * 2 1 3 5 5 C 1.46902 * 110.99770 * 73.52622 * 4 2 1 6 6 C 1.50698 * 109.46899 * 66.04952 * 5 4 2 7 7 H 1.08002 * 120.00227 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00141 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00258 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99689 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47353 * 90.00364 * 10 8 6 12 12 H 1.48501 * 109.47268 * 209.99988 * 10 8 6 13 13 H 1.48504 * 109.47324 * 330.00167 * 10 8 6 14 14 C 1.46904 * 111.00210 * 309.57830 * 4 2 1 15 15 N 1.46500 * 109.47190 * 208.26330 * 14 4 2 16 16 C 1.34541 * 124.46028 * 259.92809 * 15 14 4 17 17 O 1.21459 * 125.75004 * 359.74475 * 16 15 14 18 18 C 1.47775 * 108.48722 * 180.12044 * 16 15 14 19 19 C 1.38400 * 134.31084 * 179.88480 * 18 16 15 20 20 C 1.38855 * 119.93818 * 179.67562 * 19 18 16 21 21 C 1.37813 * 120.60854 * 0.02562 * 20 19 18 22 22 C 1.39663 * 120.37787 * 359.97438 * 21 20 19 23 23 N 1.38702 * 120.25160 * 179.97438 * 22 21 20 24 24 C 1.39395 * 119.49639 * 0.02562 * 22 21 20 25 25 C 1.34515 * 124.45653 * 79.58339 * 15 14 4 26 26 O 1.21521 * 125.66550 * 0.06112 * 25 15 14 27 27 H 1.08994 * 109.47546 * 305.57228 * 1 2 3 28 28 H 1.09001 * 109.47093 * 65.57581 * 1 2 3 29 29 H 1.09003 * 109.46355 * 185.57210 * 1 2 3 30 30 H 1.08996 * 109.47617 * 240.00304 * 2 1 3 31 31 H 1.09002 * 109.46792 * 174.10649 * 3 2 1 32 32 H 1.08998 * 109.47006 * 294.09942 * 3 2 1 33 33 H 1.08995 * 109.47165 * 54.10411 * 3 2 1 34 34 H 1.09001 * 109.47005 * 186.04471 * 5 4 2 35 35 H 1.09001 * 109.47379 * 306.05020 * 5 4 2 36 36 H 0.97000 * 119.99995 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47393 * 88.26239 * 14 4 2 38 38 H 1.09000 * 109.47062 * 328.26585 * 14 4 2 39 39 H 1.08004 * 120.03439 * 359.65302 * 19 18 16 40 40 H 1.07994 * 119.69158 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.81258 * 179.97438 * 21 20 19 42 42 H 0.97000 * 120.00271 * 180.02562 * 23 22 21 43 43 H 0.97004 * 120.00097 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6923 1.1994 5 6 1.8286 -2.1443 1.0841 6 6 2.7024 -2.6797 -0.0208 7 1 3.3360 -2.0085 -0.5816 8 6 2.6929 -4.0266 -0.3159 9 7 3.4551 -4.4938 -1.2805 10 14 1.5975 -5.1876 0.6544 11 1 0.2720 -5.2867 -0.0077 12 1 2.2258 -6.5321 0.7078 13 1 1.4240 -4.6671 2.0343 14 6 1.3715 -0.1707 2.4101 15 7 2.2718 -0.3324 3.5544 16 6 2.1799 -1.3218 4.4615 17 8 1.3479 -2.2067 4.4646 18 6 3.2563 -1.1450 5.4584 19 6 3.6469 -1.8358 6.5923 20 6 4.7400 -1.3981 7.3282 21 6 5.4436 -0.2782 6.9410 22 6 5.0664 0.4335 5.8000 23 7 5.7761 1.5606 5.4130 24 6 3.9705 0.0030 5.0538 25 6 3.3031 0.4851 3.8329 26 8 3.6293 1.4601 3.1850 27 1 -0.3634 0.5978 0.8358 28 1 -0.3633 0.4249 -0.9357 29 1 -0.3632 -1.0229 0.0998 30 1 1.8934 -0.5137 -0.8899 31 1 3.1248 1.4444 0.1055 32 1 1.7654 1.9250 -0.9381 33 1 1.5929 1.9859 0.8325 34 1 2.0994 -2.6224 2.0255 35 1 0.7839 -2.3563 0.8562 36 1 3.4487 -5.4413 -1.4878 37 1 0.4483 -0.7204 2.5936 38 1 1.1437 0.8865 2.2734 39 1 3.1017 -2.7142 6.9047 40 1 5.0410 -1.9399 8.2126 41 1 6.2916 0.0511 7.5232 42 1 5.5107 2.0524 4.6202 43 1 6.5378 1.8571 5.9353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739847020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:37 Heat of formation + Delta-G solvation = -31.807018 kcal Electronic energy + Delta-G solvation = -27462.892188 eV Core-core repulsion = 23701.052869 eV Total energy + Delta-G solvation = -3761.839319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.22959 -40.03023 -39.61056 -39.03581 -36.82815 -35.48665 -34.92696 -33.24195 -32.18001 -29.87712 -29.48727 -28.05690 -26.76841 -26.06114 -23.93558 -23.55457 -23.19154 -21.07089 -20.35470 -19.05954 -18.82747 -18.56475 -17.76834 -17.61680 -17.32289 -16.66169 -16.55814 -16.09184 -15.91763 -15.68447 -15.23792 -15.07721 -14.94725 -14.91661 -14.60440 -14.51056 -14.11120 -13.81044 -13.48861 -13.19134 -12.99819 -12.94302 -12.86618 -12.68707 -12.26517 -12.11825 -11.98915 -11.83482 -11.67278 -11.64652 -11.52795 -11.25168 -10.93467 -10.79764 -10.14389 -9.25002 -8.72332 -8.35699 -6.37705 -0.87890 0.29531 1.13648 1.24083 1.27447 1.36703 1.41604 2.01233 2.26720 2.69859 2.76584 2.81138 2.95923 3.07987 3.41557 3.81731 3.92891 4.02505 4.04773 4.12081 4.21620 4.31645 4.42082 4.48411 4.48857 4.60137 4.62109 4.73872 4.78709 4.91728 4.93329 4.95335 5.13948 5.18828 5.27182 5.35391 5.42814 5.48395 5.65604 5.68857 5.90860 6.20369 6.24495 6.33928 6.47496 6.66603 6.72567 6.83001 7.25261 8.80556 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.005205 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.944582 B = 5378.033811 C = 6482.983118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 C -0.124 4.124 4 N -0.546 5.546 5 C 0.179 3.821 6 C -0.511 4.511 7 H 0.042 0.958 8 C 0.020 3.980 9 N -0.940 5.940 10 Si 0.932 3.068 11 H -0.261 1.261 12 H -0.274 1.274 13 H -0.266 1.266 14 C 0.274 3.726 15 N -0.572 5.572 16 C 0.563 3.437 17 O -0.506 6.506 18 C -0.113 4.113 19 C -0.102 4.102 20 C -0.034 4.034 21 C -0.158 4.158 22 C 0.293 3.707 23 N -0.844 5.844 24 C -0.270 4.270 25 C 0.583 3.417 26 O -0.498 6.498 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.009 0.991 35 H -0.007 1.007 36 H 0.268 0.732 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.145 0.855 40 H 0.185 0.815 41 H 0.182 0.818 42 H 0.407 0.593 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 12.860 20.591 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 C -0.182 4.182 4 N -0.272 5.272 5 C 0.052 3.948 6 C -0.549 4.549 7 H 0.060 0.940 8 C -0.179 4.179 9 N -0.580 5.580 10 Si 0.756 3.244 11 H -0.186 1.186 12 H -0.199 1.199 13 H -0.191 1.191 14 C 0.064 3.936 15 N -0.314 5.314 16 C 0.354 3.646 17 O -0.380 6.380 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.053 4.053 21 C -0.180 4.180 22 C 0.180 3.820 23 N -0.380 5.380 24 C -0.280 4.280 25 C 0.376 3.624 26 O -0.373 6.373 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.010 0.990 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.163 0.837 40 H 0.203 0.797 41 H 0.199 0.801 42 H 0.237 0.763 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.347 12.885 20.100 23.991 hybrid contribution -1.141 -0.921 -0.760 1.652 sum 1.206 11.963 19.340 22.773 Atomic orbital electron populations 1.22414 0.95906 1.01414 1.03598 1.21663 0.93782 0.95276 0.91980 1.21714 1.00690 0.93573 1.02185 1.61698 1.58177 1.04993 1.02305 1.19886 0.94165 0.85172 0.95538 1.21131 1.24065 0.93321 1.16408 0.93977 1.25641 0.96780 0.99626 0.95812 1.70014 1.41204 1.14903 1.31882 0.85940 0.79788 0.78754 0.79940 1.18606 1.19926 1.19097 1.22096 0.88195 1.02015 0.81291 1.46798 1.31183 1.27524 1.25875 1.19076 0.84069 0.79576 0.81893 1.90753 1.39113 1.32925 1.75255 1.20294 0.96039 0.97917 0.97506 1.20935 0.98530 1.00167 0.92640 1.21625 0.90883 0.94118 0.98676 1.21451 1.03644 0.97060 0.95829 1.17487 0.86659 0.86774 0.91065 1.42546 1.34604 1.27963 1.32902 1.19756 1.04006 1.03205 1.00996 1.18370 0.78622 0.81304 0.84090 1.90684 1.65437 1.26081 1.55059 0.91196 0.90064 0.94155 0.91469 0.94041 0.90351 0.92135 0.97296 0.98975 0.92271 0.91487 0.86397 0.83681 0.79746 0.80112 0.76320 0.74798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.63 8.51 71.98 0.61 -5.02 16 2 C 0.08 3.18 2.74 44.92 0.12 3.30 16 3 C -0.12 -4.04 9.13 71.98 0.66 -3.38 16 4 N -0.55 -24.48 4.52 -887.79 -4.01 -28.49 16 5 C 0.18 9.44 3.53 85.56 0.30 9.74 16 6 C -0.51 -31.17 8.87 25.60 0.23 -30.94 16 7 H 0.04 2.83 7.47 -2.91 -0.02 2.81 16 8 C 0.02 1.20 5.47 84.66 0.46 1.67 16 9 N -0.94 -60.37 13.96 21.45 0.30 -60.07 16 10 Si 0.93 47.63 27.47 68.60 1.88 49.51 16 11 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.27 -13.82 6.54 99.48 0.65 -13.17 16 14 C 0.27 10.44 4.06 170.80 0.69 11.13 16 15 N -0.57 -21.87 2.86 -773.95 -2.22 -24.09 16 16 C 0.56 21.68 7.51 86.80 0.65 22.33 16 17 O -0.51 -22.20 17.08 -3.59 -0.06 -22.26 16 18 C -0.11 -3.41 6.40 -20.01 -0.13 -3.54 16 19 C -0.10 -2.15 10.08 22.46 0.23 -1.93 16 20 C -0.03 -0.42 10.02 22.32 0.22 -0.20 16 21 C -0.16 -1.90 9.89 22.51 0.22 -1.67 16 22 C 0.29 5.78 6.78 38.68 0.26 6.04 16 23 N -0.84 -12.83 9.04 -51.21 -0.46 -13.29 16 24 C -0.27 -7.78 6.30 -19.92 -0.13 -7.91 16 25 C 0.58 20.72 7.97 86.66 0.69 21.41 16 26 O -0.50 -18.47 16.69 -3.78 -0.06 -18.53 16 27 H 0.07 1.91 6.87 -2.39 -0.02 1.89 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.04 1.46 6.56 -2.39 -0.02 1.44 16 30 H 0.07 3.12 6.60 -2.39 -0.02 3.11 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 1.77 6.61 -2.39 -0.02 1.75 16 34 H 0.01 0.51 6.11 -2.39 -0.01 0.49 16 35 H -0.01 -0.38 5.93 -2.39 -0.01 -0.39 16 36 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 37 H 0.07 2.57 7.39 -2.39 -0.02 2.55 16 38 H 0.12 3.87 5.58 -2.39 -0.01 3.85 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.19 0.64 8.06 -2.91 -0.02 0.61 16 41 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 42 H 0.41 7.75 7.67 -92.71 -0.71 7.04 16 43 H 0.42 3.03 8.84 -92.71 -0.82 2.21 16 Total: -1.00 -82.23 352.17 -0.04 -82.27 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.51 Total: 13.91 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 5.10 Total: 21.04 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -6.39 Total: -125.93 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.12 Total: -40.79 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.88 Total: 49.51 kcal Total: -82.23 -0.04 -82.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739847020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.458 kcal (2) G-P(sol) polarization free energy of solvation -82.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds