Wall clock time and date at job start Tue Mar 31 2020 12:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47027 * 2 1 4 4 O 1.42904 * 109.47389 * 240.00254 * 2 1 3 5 5 C 1.35800 * 116.99595 * 275.17360 * 4 2 1 6 6 C 1.38619 * 120.07677 * 5.41352 * 5 4 2 7 7 C 1.38059 * 120.17448 * 179.72573 * 6 5 4 8 8 C 1.39087 * 120.32043 * 0.55789 * 7 6 5 9 9 N 1.39963 * 119.93166 * 179.74684 * 8 7 6 10 10 C 1.46499 * 119.99813 * 359.97219 * 9 8 7 11 11 C 1.50694 * 109.47200 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99786 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00229 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99988 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.47176 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99632 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00059 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99649 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00306 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47081 * 89.99581 * 19 17 15 21 21 H 1.48490 * 109.47272 * 209.99914 * 19 17 15 22 22 H 1.48505 * 109.46751 * 330.00059 * 19 17 15 23 23 C 1.38439 * 120.14307 * 359.72190 * 8 7 6 24 24 C 1.39704 * 119.82156 * 0.02562 * 23 8 7 25 25 C 1.43202 * 120.15513 * 180.02562 * 24 23 8 26 26 N 4.92378 * 114.02833 * 250.52045 * 2 1 3 27 27 H 1.09001 * 109.46662 * 60.00151 * 1 2 3 28 28 H 1.08997 * 109.47310 * 300.00429 * 1 2 3 29 29 H 1.08993 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47212 * 119.99566 * 2 1 3 31 31 H 1.08997 * 109.47426 * 59.99642 * 3 2 1 32 32 H 1.09000 * 109.46943 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46846 * 299.99775 * 3 2 1 34 34 H 1.08001 * 119.91460 * 359.97438 * 6 5 4 35 35 H 1.08005 * 119.83894 * 180.25631 * 7 6 5 36 36 H 0.97001 * 119.99996 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.47181 * 300.00506 * 10 9 8 38 38 H 1.09002 * 109.47092 * 60.00046 * 10 9 8 39 39 H 0.97003 * 119.99774 * 0.02562 * 13 11 10 40 40 H 1.08999 * 109.47556 * 300.00420 * 14 13 11 41 41 H 1.09002 * 109.47213 * 60.00263 * 14 13 11 42 42 H 0.97006 * 119.99857 * 180.02562 * 18 17 15 43 43 H 1.07997 * 120.08870 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.1091 -2.0260 -1.0991 6 6 1.6545 -2.7020 0.0225 7 6 1.7527 -4.0773 0.0910 8 6 2.3182 -4.7941 -0.9583 9 7 2.4185 -6.1878 -0.8779 10 6 1.9286 -6.8901 0.3108 11 6 2.1519 -8.3713 0.1468 12 8 2.6697 -8.7983 -0.8634 13 7 1.7770 -9.2216 1.1230 14 6 1.9946 -10.6615 0.9638 15 6 1.4905 -11.3840 2.1865 16 1 1.0516 -10.8263 3.0005 17 6 1.5888 -12.7570 2.2654 18 7 1.1484 -13.3874 3.3322 19 14 2.3473 -13.7216 0.8571 20 1 3.8100 -13.8527 1.0781 21 1 1.7331 -15.0721 0.7947 22 1 2.1021 -13.0067 -0.4212 23 6 2.7818 -4.1320 -2.0822 24 6 2.6806 -2.7408 -2.1601 25 6 3.1572 -2.0486 -3.3196 26 7 3.5349 -1.4997 -4.2397 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.2187 -2.1516 0.8432 35 1 1.3930 -4.5988 0.9657 36 1 2.8124 -6.6887 -1.6093 37 1 2.4673 -6.5361 1.1897 38 1 0.8633 -6.6951 0.4347 39 1 1.3632 -8.8800 1.9311 40 1 1.4556 -11.0155 0.0850 41 1 3.0598 -10.8565 0.8395 42 1 1.2178 -14.3534 3.3879 43 1 3.2204 -4.6894 -2.8966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771883458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:25 Heat of formation + Delta-G solvation = -21.316316 kcal Electronic energy + Delta-G solvation = -24675.741318 eV Core-core repulsion = 20914.356910 eV Total energy + Delta-G solvation = -3761.384408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78141 -39.45887 -38.42051 -36.71709 -35.08409 -34.42971 -33.34868 -32.49481 -31.61330 -29.94454 -28.23186 -27.70341 -26.09319 -24.32189 -23.17010 -22.04753 -21.20103 -20.16853 -19.37781 -18.09006 -17.74744 -16.71747 -16.40116 -15.91380 -15.61641 -15.53259 -15.33366 -15.05603 -14.87298 -14.23264 -14.17254 -13.75045 -13.63154 -13.54009 -13.29157 -13.04958 -13.02686 -12.83089 -12.74144 -12.57166 -12.42603 -12.40322 -12.33788 -11.96853 -11.61217 -11.29475 -11.13526 -11.03045 -10.85716 -10.06576 -9.79583 -9.61861 -9.52333 -9.30550 -8.88204 -8.36192 -7.39663 -6.30031 -4.33401 0.54005 1.22908 2.55940 2.78331 2.83709 2.93636 3.08887 3.20484 3.28008 3.34495 3.67394 3.75503 3.90198 4.25333 4.31383 4.41982 4.49471 4.65325 4.71417 4.87735 5.02599 5.05054 5.07795 5.11065 5.21213 5.26318 5.27433 5.29293 5.33017 5.46616 5.61132 5.67438 5.73470 5.88480 5.97829 6.17617 6.64511 6.92526 6.93840 7.01170 7.12659 7.25540 7.41000 7.60832 7.97065 8.34362 8.58396 8.71877 9.29059 10.81663 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.002086 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.787295 B =13420.362064 C =14420.583478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.077 3.923 3 C -0.150 4.150 4 O -0.309 6.309 5 C 0.118 3.882 6 C -0.160 4.160 7 C -0.129 4.129 8 C 0.193 3.807 9 N -0.732 5.732 10 C 0.104 3.896 11 C 0.495 3.505 12 O -0.555 6.555 13 N -0.698 5.698 14 C 0.220 3.780 15 C -0.547 4.547 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.890 5.890 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.261 1.261 23 C -0.113 4.113 24 C -0.016 4.016 25 C 0.269 3.731 26 N -0.425 5.425 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.414 0.586 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.399 0.601 40 H 0.027 0.973 41 H 0.023 0.977 42 H 0.269 0.731 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 26.222 -2.806 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.223 6.223 5 C 0.068 3.932 6 C -0.179 4.179 7 C -0.152 4.152 8 C 0.089 3.911 9 N -0.365 5.365 10 C -0.025 4.025 11 C 0.279 3.721 12 O -0.434 6.434 13 N -0.347 5.347 14 C 0.098 3.902 15 C -0.585 4.585 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.186 1.186 23 C -0.139 4.139 24 C -0.021 4.021 25 C -0.046 4.046 26 N -0.101 5.101 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.252 0.748 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.233 0.767 40 H 0.045 0.955 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.267 26.583 -4.826 27.019 hybrid contribution -0.002 -1.023 0.206 1.043 sum -0.268 25.560 -4.620 25.976 Atomic orbital electron populations 1.22408 0.94903 1.03384 1.03246 1.22470 0.94433 0.93704 0.87284 1.21860 1.02210 0.93532 1.03079 1.86118 1.81314 1.15932 1.38951 1.18570 0.97978 0.82763 0.93859 1.20968 1.04396 0.94647 0.97908 1.20735 1.02315 0.93387 0.98772 1.17463 0.96034 0.83930 0.93683 1.44392 1.68350 1.02406 1.21389 1.21103 1.00836 0.90771 0.89749 1.20369 0.79449 0.88083 0.84201 1.90659 1.44699 1.78664 1.29390 1.46129 1.60046 1.09060 1.19422 1.19546 0.96698 0.75698 0.98232 1.21057 1.42396 0.92505 1.02528 0.90136 1.24796 0.94486 0.97439 0.95874 1.69873 1.45589 1.09313 1.27889 0.86815 0.79941 0.79677 0.83233 1.19806 1.20824 1.18553 1.20361 1.03835 0.91139 0.98524 1.14925 1.06374 0.91140 0.89637 1.25365 0.93375 0.93178 0.92699 1.81198 1.09535 1.08303 1.11031 0.91418 0.90911 0.91496 0.90540 0.90408 0.91612 0.91514 0.84341 0.84794 0.74762 0.89305 0.89315 0.76665 0.95512 0.95961 0.92153 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 9.17 37.16 0.34 -0.60 16 2 C 0.08 0.47 2.85 -26.73 -0.08 0.40 16 3 C -0.15 -0.77 9.56 37.16 0.36 -0.42 16 4 O -0.31 -2.91 9.23 -19.11 -0.18 -3.09 16 5 C 0.12 1.09 6.60 -38.74 -0.26 0.84 16 6 C -0.16 -1.19 8.22 -39.51 -0.32 -1.51 16 7 C -0.13 -1.01 9.30 -39.33 -0.37 -1.38 16 8 C 0.19 1.83 6.65 -83.76 -0.56 1.27 16 9 N -0.73 -7.90 5.71 -59.81 -0.34 -8.25 16 10 C 0.10 1.10 5.39 -5.20 -0.03 1.08 16 11 C 0.49 7.99 7.90 -10.99 -0.09 7.90 16 12 O -0.55 -11.06 15.67 5.55 0.09 -10.97 16 13 N -0.70 -12.39 5.55 -61.47 -0.34 -12.73 16 14 C 0.22 5.04 4.50 -5.19 -0.02 5.01 16 15 C -0.55 -14.20 9.83 -34.44 -0.34 -14.54 16 16 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -25.52 13.96 55.43 0.77 -24.74 16 19 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 23 C -0.11 -1.08 9.60 -38.96 -0.37 -1.45 16 24 C -0.02 -0.16 5.75 -106.72 -0.61 -0.78 16 25 C 0.27 3.29 14.86 -22.47 -0.33 2.96 16 26 N -0.42 -6.03 18.54 41.84 0.78 -5.26 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.36 6.90 -51.93 -0.36 0.00 16 30 H 0.08 0.38 6.32 -51.93 -0.33 0.05 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.14 0.72 5.41 -52.49 -0.28 0.43 16 35 H 0.13 0.82 6.71 -52.48 -0.35 0.47 16 36 H 0.41 4.98 7.45 -40.82 -0.30 4.68 16 37 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 38 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 39 H 0.40 5.99 8.32 -40.82 -0.34 5.65 16 40 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 41 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -32.40 369.19 -6.78 -39.18 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.67 Total: 3.51 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.78 Total: 0.81 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.87 Total: -50.98 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.09 Total: -14.06 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.40 -6.78 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.867 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds