Wall clock time and date at job start Tue Mar 31 2020 12:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47027 * 2 1 4 4 O 1.42904 * 109.47389 * 240.00254 * 2 1 3 5 5 C 1.35800 * 116.99595 * 275.17360 * 4 2 1 6 6 C 1.38619 * 120.07677 * 5.41352 * 5 4 2 7 7 C 1.38059 * 120.17448 * 179.72573 * 6 5 4 8 8 C 1.39087 * 120.32043 * 0.55789 * 7 6 5 9 9 N 1.39963 * 119.93166 * 179.74684 * 8 7 6 10 10 C 1.46499 * 119.99813 * 359.97219 * 9 8 7 11 11 C 1.50694 * 109.47200 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99786 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00229 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99988 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.47176 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99632 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00059 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99649 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00306 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47081 * 89.99581 * 19 17 15 21 21 H 1.48490 * 109.47272 * 209.99914 * 19 17 15 22 22 H 1.48505 * 109.46751 * 330.00059 * 19 17 15 23 23 C 1.38439 * 120.14307 * 359.72190 * 8 7 6 24 24 C 1.39704 * 119.82156 * 0.02562 * 23 8 7 25 25 C 1.43202 * 120.15513 * 180.02562 * 24 23 8 26 26 N 4.92378 * 114.02833 * 250.52045 * 2 1 3 27 27 H 1.09001 * 109.46662 * 60.00151 * 1 2 3 28 28 H 1.08997 * 109.47310 * 300.00429 * 1 2 3 29 29 H 1.08993 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47212 * 119.99566 * 2 1 3 31 31 H 1.08997 * 109.47426 * 59.99642 * 3 2 1 32 32 H 1.09000 * 109.46943 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46846 * 299.99775 * 3 2 1 34 34 H 1.08001 * 119.91460 * 359.97438 * 6 5 4 35 35 H 1.08005 * 119.83894 * 180.25631 * 7 6 5 36 36 H 0.97001 * 119.99996 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.47181 * 300.00506 * 10 9 8 38 38 H 1.09002 * 109.47092 * 60.00046 * 10 9 8 39 39 H 0.97003 * 119.99774 * 0.02562 * 13 11 10 40 40 H 1.08999 * 109.47556 * 300.00420 * 14 13 11 41 41 H 1.09002 * 109.47213 * 60.00263 * 14 13 11 42 42 H 0.97006 * 119.99857 * 180.02562 * 18 17 15 43 43 H 1.07997 * 120.08870 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.1091 -2.0260 -1.0991 6 6 1.6545 -2.7020 0.0225 7 6 1.7527 -4.0773 0.0910 8 6 2.3182 -4.7941 -0.9583 9 7 2.4185 -6.1878 -0.8779 10 6 1.9286 -6.8901 0.3108 11 6 2.1519 -8.3713 0.1468 12 8 2.6697 -8.7983 -0.8634 13 7 1.7770 -9.2216 1.1230 14 6 1.9946 -10.6615 0.9638 15 6 1.4905 -11.3840 2.1865 16 1 1.0516 -10.8263 3.0005 17 6 1.5888 -12.7570 2.2654 18 7 1.1484 -13.3874 3.3322 19 14 2.3473 -13.7216 0.8571 20 1 3.8100 -13.8527 1.0781 21 1 1.7331 -15.0721 0.7947 22 1 2.1021 -13.0067 -0.4212 23 6 2.7818 -4.1320 -2.0822 24 6 2.6806 -2.7408 -2.1601 25 6 3.1572 -2.0486 -3.3196 26 7 3.5349 -1.4997 -4.2397 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.2187 -2.1516 0.8432 35 1 1.3930 -4.5988 0.9657 36 1 2.8124 -6.6887 -1.6093 37 1 2.4673 -6.5361 1.1897 38 1 0.8633 -6.6951 0.4347 39 1 1.3632 -8.8800 1.9311 40 1 1.4556 -11.0155 0.0850 41 1 3.0598 -10.8565 0.8395 42 1 1.2178 -14.3534 3.3879 43 1 3.2204 -4.6894 -2.8966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771883458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:24 Heat of formation + Delta-G solvation = -43.808974 kcal Electronic energy + Delta-G solvation = -24676.716673 eV Core-core repulsion = 20914.356910 eV Total energy + Delta-G solvation = -3762.359763 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45109 -40.67676 -39.18205 -37.67938 -36.29169 -35.66622 -34.41365 -33.87666 -32.29341 -31.03847 -29.62525 -28.14791 -27.07265 -25.09170 -24.08474 -23.53751 -21.76010 -21.54635 -20.08056 -19.32747 -18.62044 -18.14999 -17.39492 -16.87880 -16.69937 -16.49867 -16.41137 -16.00744 -15.68742 -15.40879 -15.04691 -14.90835 -14.76490 -14.50197 -14.27223 -14.11430 -13.99398 -13.89569 -13.71851 -13.50500 -13.29842 -13.10229 -12.99555 -12.99026 -12.76389 -12.66429 -12.14246 -11.93462 -11.82265 -11.63282 -11.53244 -10.92935 -10.90327 -10.47625 -10.00374 -9.94147 -8.38257 -8.11170 -6.44790 -0.17460 0.56421 1.33780 1.37241 1.47911 1.62739 1.67056 1.99830 2.09522 2.25752 2.29140 2.72650 2.92891 2.97617 3.00846 3.82466 3.86745 3.90492 4.03518 4.16601 4.23006 4.25483 4.42984 4.45526 4.51480 4.71367 4.76163 4.80660 4.85450 4.91298 4.92084 5.03661 5.05035 5.20993 5.27981 5.28305 5.34085 5.38013 5.49507 5.54163 6.07820 6.25195 6.43076 6.55360 6.57369 6.73032 6.86268 7.16865 7.37836 8.76105 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.002086 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.787295 B =13420.362064 C =14420.583478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.068 3.932 3 C -0.150 4.150 4 O -0.332 6.332 5 C 0.119 3.881 6 C -0.152 4.152 7 C -0.115 4.115 8 C 0.183 3.817 9 N -0.741 5.741 10 C 0.117 3.883 11 C 0.494 3.506 12 O -0.595 6.595 13 N -0.699 5.699 14 C 0.231 3.769 15 C -0.544 4.544 16 H 0.064 0.936 17 C 0.026 3.974 18 N -0.930 5.930 19 Si 0.935 3.065 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.260 1.260 23 C -0.115 4.115 24 C -0.038 4.038 25 C 0.285 3.715 26 N -0.472 5.472 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.405 0.595 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.414 0.586 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.271 0.729 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 27.496 -1.520 27.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 C -0.207 4.207 4 O -0.246 6.246 5 C 0.070 3.930 6 C -0.171 4.171 7 C -0.138 4.138 8 C 0.080 3.920 9 N -0.375 5.375 10 C -0.011 4.011 11 C 0.282 3.718 12 O -0.476 6.476 13 N -0.349 5.349 14 C 0.107 3.893 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.175 4.175 18 N -0.569 5.569 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.184 1.184 23 C -0.141 4.141 24 C -0.043 4.043 25 C -0.028 4.028 26 N -0.149 5.149 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.184 0.816 35 H 0.179 0.821 36 H 0.242 0.758 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.250 0.750 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.897 27.914 -3.519 28.149 hybrid contribution 0.143 -1.306 -0.117 1.319 sum -0.753 26.608 -3.637 26.866 Atomic orbital electron populations 1.22400 0.94031 1.03530 1.03695 1.22776 0.95158 0.93919 0.86847 1.21903 1.01763 0.93299 1.03721 1.86117 1.81468 1.16116 1.40886 1.18747 0.97326 0.82988 0.93975 1.21232 1.03496 0.94612 0.97774 1.21063 1.00517 0.93507 0.98740 1.17519 0.96873 0.83340 0.94220 1.44400 1.69007 1.02836 1.21264 1.21148 1.03129 0.86096 0.90686 1.21286 0.77663 0.90200 0.82696 1.90646 1.46177 1.79896 1.30912 1.45916 1.60883 1.07251 1.20839 1.19101 0.95491 0.78694 0.96038 1.21307 1.41286 0.92661 1.02983 0.91780 1.25582 0.95157 0.98740 0.98002 1.69977 1.47378 1.09783 1.29784 0.85896 0.79356 0.78469 0.80379 1.19169 1.20191 1.18411 1.20366 1.03901 0.90846 0.98951 1.15032 1.08196 0.91486 0.89601 1.25772 0.92248 0.92285 0.92539 1.81192 1.11436 1.09767 1.12466 0.92674 0.88802 0.91456 0.88727 0.88049 0.92359 0.92598 0.81553 0.82112 0.75750 0.86219 0.86274 0.74974 0.96920 0.97010 0.91941 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.17 71.98 0.66 -0.71 16 2 C 0.07 0.67 2.85 30.60 0.09 0.76 16 3 C -0.15 -1.30 9.56 71.98 0.69 -0.61 16 4 O -0.33 -5.81 9.23 -91.31 -0.84 -6.65 16 5 C 0.12 1.99 6.60 22.82 0.15 2.14 16 6 C -0.15 -1.69 8.22 22.32 0.18 -1.51 16 7 C -0.12 -1.33 9.30 22.43 0.21 -1.12 16 8 C 0.18 2.99 6.65 38.09 0.25 3.24 16 9 N -0.74 -14.15 5.71 -343.14 -1.96 -16.12 16 10 C 0.12 2.04 5.39 85.63 0.46 2.50 16 11 C 0.49 14.95 7.90 87.65 0.69 15.64 16 12 O -0.59 -23.18 15.67 -3.04 -0.05 -23.23 16 13 N -0.70 -23.63 5.55 -466.79 -2.59 -26.21 16 14 C 0.23 10.39 4.50 85.63 0.38 10.78 16 15 C -0.54 -28.18 9.83 25.60 0.25 -27.93 16 16 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 17 C 0.03 1.39 5.47 84.65 0.46 1.85 16 18 N -0.93 -53.67 13.96 21.45 0.30 -53.37 16 19 Si 0.93 42.44 27.47 68.60 1.88 44.32 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 23 C -0.12 -2.08 9.60 22.67 0.22 -1.86 16 24 C -0.04 -0.76 5.75 -21.22 -0.12 -0.88 16 25 C 0.29 7.14 14.86 88.33 1.31 8.46 16 26 N -0.47 -13.91 18.54 19.00 0.35 -13.55 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 0.51 6.90 -2.39 -0.02 0.50 16 30 H 0.09 0.58 6.32 -2.39 -0.02 0.57 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.17 0.90 5.41 -2.91 -0.02 0.89 16 35 H 0.16 1.00 6.71 -2.91 -0.02 0.99 16 36 H 0.41 9.29 7.45 -92.71 -0.69 8.59 16 37 H 0.12 1.44 7.94 -2.39 -0.02 1.42 16 38 H 0.12 1.44 7.94 -2.39 -0.02 1.43 16 39 H 0.41 11.49 8.32 -92.71 -0.77 10.72 16 40 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 41 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 42 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 43 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -71.86 369.19 2.54 -69.32 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.45 Total: 14.73 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.89 Total: 10.76 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -3.90 Total: -109.25 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.89 Total: -29.88 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -71.86 2.54 -69.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.511 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds