Wall clock time and date at job start Tue Mar 31 2020 12:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.52999 * 109.47628 * 240.00203 * 2 1 3 5 5 C 1.52997 * 109.47317 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 10 10 C 1.53002 * 109.47143 * 180.02562 * 8 7 6 11 11 C 1.50696 * 109.47039 * 295.00134 * 10 8 7 12 12 O 1.21284 * 120.00000 * 0.02562 * 11 10 8 13 13 N 1.34782 * 120.00377 * 180.02562 * 11 10 8 14 14 S 1.65592 * 120.00049 * 179.97438 * 13 11 10 15 15 O 1.42102 * 104.27728 * 181.06941 * 14 13 11 16 16 O 1.42092 * 104.28362 * 308.92802 * 14 13 11 17 17 C 1.81397 * 104.45036 * 65.00353 * 14 13 11 18 18 C 1.53002 * 109.47653 * 179.97438 * 17 14 13 19 19 C 1.50693 * 109.47542 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99862 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99894 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00197 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99697 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47041 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46977 * 120.00046 * 23 21 19 26 26 H 1.48503 * 109.46770 * 239.99561 * 23 21 19 27 27 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 28 28 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 29 29 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46929 * 59.99225 * 4 2 1 31 31 H 1.09002 * 109.46716 * 300.00030 * 4 2 1 32 32 H 1.09002 * 109.47153 * 299.99641 * 5 4 2 33 33 H 1.09001 * 109.46832 * 179.97438 * 5 4 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 35 35 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 36 36 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 38 38 H 1.08997 * 109.47011 * 55.00129 * 10 8 7 39 39 H 1.08999 * 109.47369 * 175.00236 * 10 8 7 40 40 H 0.97004 * 119.99318 * 359.97438 * 13 11 10 41 41 H 1.09005 * 109.47092 * 299.99367 * 17 14 13 42 42 H 1.09001 * 109.47642 * 59.99470 * 17 14 13 43 43 H 1.09005 * 109.46478 * 299.99894 * 18 17 14 44 44 H 1.09001 * 109.46906 * 59.99170 * 18 17 14 45 45 H 0.96999 * 119.99870 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2497 8 6 2.0396 -0.7216 1.2493 9 1 1.6759 -1.7491 1.2491 10 6 1.5295 0.0002 2.4982 11 6 1.9276 -0.7779 3.7258 12 8 2.5577 -1.8080 3.6130 13 7 1.5834 -0.3290 4.9493 14 16 2.0204 -1.1844 6.2981 15 8 1.4752 -0.4386 7.3779 16 8 1.5844 -2.5098 6.0293 17 6 3.8324 -1.1023 6.3189 18 6 4.3637 -1.8650 7.5342 19 6 5.8691 -1.7973 7.5511 20 1 6.3944 -1.2640 6.7726 21 6 6.5757 -2.4170 8.5598 22 7 5.9360 -3.0668 9.5075 23 14 8.4418 -2.3325 8.5811 24 1 8.9150 -1.5474 7.4128 25 1 8.8933 -1.6767 9.8346 26 1 9.0003 -3.7068 8.5125 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -0.2074 -2.1392 31 1 1.6768 -1.7489 -1.2492 32 1 3.9338 0.3059 -1.2486 33 1 3.9335 -1.2359 -2.1386 34 1 3.7159 -2.4708 0.0002 35 1 5.1696 -1.4433 0.0009 36 1 3.9328 -1.2359 2.1397 37 1 3.9331 0.3055 1.2499 38 1 1.9644 0.9986 2.5439 39 1 0.4432 0.0788 2.4543 40 1 1.0798 0.4951 5.0395 41 1 4.2269 -1.5510 5.4071 42 1 4.1484 -0.0607 6.3774 43 1 3.9692 -1.4159 8.4458 44 1 4.0478 -2.9065 7.4761 45 1 6.4332 -3.5025 10.2174 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776121066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:36 Heat of formation + Delta-G solvation = -154.007818 kcal Electronic energy + Delta-G solvation = -25398.266502 eV Core-core repulsion = 21734.279359 eV Total energy + Delta-G solvation = -3663.987143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54627 -38.71555 -36.68705 -35.60743 -34.44044 -33.89213 -33.32552 -32.23496 -31.17947 -28.15057 -26.21012 -25.61511 -22.92879 -21.75457 -21.53557 -20.77797 -19.93811 -19.28282 -17.84042 -17.45475 -16.54549 -15.96925 -15.37927 -15.21642 -15.09914 -14.85883 -14.70564 -14.53944 -14.28001 -13.99255 -13.43069 -13.22512 -12.78439 -12.62390 -12.50888 -12.17949 -12.01646 -11.89449 -11.78198 -11.71950 -11.71111 -11.60783 -11.18062 -11.09072 -11.02630 -10.99052 -10.84569 -10.59211 -10.51298 -10.38312 -10.32132 -10.16392 -9.86123 -9.67411 -9.16422 -8.50050 -6.12059 -4.17413 0.51904 2.12407 2.75973 3.26412 3.33524 3.37274 4.00380 4.18697 4.33198 4.37698 4.45960 4.57345 4.67118 4.77798 4.91018 4.96304 5.05579 5.12019 5.22522 5.23399 5.29247 5.34301 5.36154 5.48723 5.52768 5.57420 5.60331 5.71463 5.72970 5.80696 5.88449 5.99646 6.04279 6.07394 6.13274 6.34282 6.36226 6.46287 6.67266 7.28800 7.35337 7.52398 7.81248 8.17028 8.85818 9.47214 10.99118 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.003497 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.383294 B = 8004.963790 C = 9504.121701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.125 4.125 8 C -0.071 4.071 9 H 0.083 0.917 10 C -0.143 4.143 11 C 0.531 3.469 12 O -0.485 6.485 13 N -1.061 6.061 14 S 2.565 3.435 15 O -0.957 6.957 16 O -0.939 6.939 17 C -0.575 4.575 18 C 0.029 3.971 19 C -0.518 4.518 20 H 0.063 0.937 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.901 3.099 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.428 0.572 41 H 0.131 0.869 42 H 0.121 0.879 43 H 0.034 0.966 44 H 0.036 0.964 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.874 10.030 -20.968 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.163 4.163 8 C -0.090 4.090 9 H 0.101 0.899 10 C -0.185 4.185 11 C 0.317 3.683 12 O -0.356 6.356 13 N -0.822 5.822 14 S 2.665 3.335 15 O -0.947 6.947 16 O -0.929 6.929 17 C -0.710 4.710 18 C -0.010 4.010 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.728 3.272 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.262 0.738 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.054 8.737 -20.341 24.314 hybrid contribution 1.197 0.754 -0.055 1.415 sum -8.857 9.491 -20.396 24.177 Atomic orbital electron populations 1.21946 0.95380 1.02098 1.01635 1.21165 0.95272 0.99588 0.94479 0.91074 1.21570 0.95683 1.00749 0.97033 1.21557 0.95529 1.00664 0.98025 1.21496 1.00257 0.99633 0.94170 1.21762 0.94293 1.00736 0.99461 1.21034 0.96303 1.00059 0.91566 0.89874 1.22003 1.03789 1.00522 0.92157 1.20746 0.77530 0.85181 0.84818 1.90880 1.36357 1.22362 1.86046 1.55457 1.64435 1.39509 1.22836 1.06689 0.80099 0.74226 0.72464 1.93586 1.78089 1.72235 1.50818 1.93593 1.80377 1.36082 1.82869 1.30335 1.18703 1.10440 1.11510 1.18992 0.98342 0.95140 0.88524 1.21013 0.89961 1.34473 1.10321 0.91919 1.25067 0.99122 0.94962 0.95339 1.69964 1.35825 1.34079 1.12974 0.86396 0.84807 0.77961 0.78026 1.19615 1.20801 1.20756 0.92386 0.92728 0.92485 0.92177 0.91894 0.92181 0.92305 0.91836 0.92047 0.89724 0.92412 0.87935 0.87766 0.73761 0.85080 0.86113 0.94790 0.94598 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.85 37.16 0.33 -0.61 16 2 C -0.09 -0.60 2.25 -90.62 -0.20 -0.81 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -0.81 5.20 -26.73 -0.14 -0.95 16 5 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 6 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 7 C -0.13 -1.28 4.94 -26.73 -0.13 -1.41 16 8 C -0.07 -0.64 1.36 -90.62 -0.12 -0.76 16 9 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 10 C -0.14 -1.17 4.96 -27.88 -0.14 -1.30 16 11 C 0.53 6.71 7.29 -10.98 -0.08 6.63 16 12 O -0.49 -8.07 12.07 -11.57 -0.14 -8.21 16 13 N -1.06 -13.07 5.60 31.22 0.17 -12.90 16 14 S 2.56 46.63 5.11 -107.50 -0.55 46.08 16 15 O -0.96 -19.04 18.08 -57.54 -1.04 -20.08 16 16 O -0.94 -20.67 17.04 -64.79 -1.10 -21.78 16 17 C -0.58 -11.42 5.82 37.16 0.22 -11.20 16 18 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 19 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 20 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 23 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H 0.06 0.31 6.32 -51.93 -0.33 -0.02 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.63 6.17 -51.93 -0.32 0.31 16 40 H 0.43 3.43 8.79 -34.47 -0.30 3.12 16 41 H 0.13 2.55 7.19 -51.92 -0.37 2.17 16 42 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -36.15 366.53 -10.06 -46.21 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.51 Total: 0.12 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -1.14 Total: -25.43 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.91 Total: -38.84 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.28 Total: -50.06 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 46.63 SS G_CDS: -0.55 Total: 46.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.15 -10.06 -46.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776121066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.793 kcal (2) G-P(sol) polarization free energy of solvation -36.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds