Wall clock time and date at job start Tue Mar 31 2020 12:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53002 * 109.46637 * 119.99871 * 2 1 3 5 5 C 1.52997 * 109.46817 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 300.00239 * 5 4 2 7 7 C 1.52999 * 109.47159 * 59.99536 * 6 5 4 8 8 C 1.52997 * 109.47317 * 300.00546 * 7 6 5 9 9 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 10 10 C 1.53002 * 109.46817 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.47344 * 64.99877 * 10 8 7 12 12 O 1.21278 * 119.99753 * 0.02562 * 11 10 8 13 13 N 1.34771 * 120.00023 * 179.97438 * 11 10 8 14 14 S 1.65601 * 120.00056 * 179.97438 * 13 11 10 15 15 O 1.42104 * 104.27858 * 181.07307 * 14 13 11 16 16 O 1.42094 * 104.27849 * 308.93281 * 14 13 11 17 17 C 1.81401 * 104.44597 * 65.00344 * 14 13 11 18 18 C 1.53009 * 109.47082 * 180.02562 * 17 14 13 19 19 C 1.50701 * 109.47010 * 179.97438 * 18 17 14 20 20 H 1.07995 * 119.99930 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99727 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00085 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46924 * 90.00054 * 23 21 19 25 25 H 1.48497 * 109.47326 * 209.99786 * 23 21 19 26 26 H 1.48497 * 109.46969 * 330.00438 * 23 21 19 27 27 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 29 29 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 30 30 H 1.09002 * 109.47075 * 60.00414 * 4 2 1 31 31 H 1.08993 * 109.47662 * 299.99908 * 4 2 1 32 32 H 1.09001 * 109.47289 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47153 * 60.00231 * 5 4 2 34 34 H 1.09002 * 109.46935 * 300.00125 * 6 5 4 35 35 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.46929 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46716 * 60.00455 * 7 6 5 38 38 H 1.09008 * 109.46873 * 184.99985 * 10 8 7 39 39 H 1.08997 * 109.47047 * 304.99674 * 10 8 7 40 40 H 0.97002 * 120.00482 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.47701 * 299.99895 * 17 14 13 42 42 H 1.08996 * 109.47533 * 60.00276 * 17 14 13 43 43 H 1.09001 * 109.47137 * 299.99871 * 18 17 14 44 44 H 1.08996 * 109.46777 * 59.99732 * 18 17 14 45 45 H 0.97000 * 119.99922 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0002 7 6 3.5695 -0.7223 -1.2495 8 6 2.0395 -0.7217 -1.2492 9 1 1.6758 -1.7492 -1.2490 10 6 1.5296 0.0001 -2.4982 11 6 1.9278 -0.7780 -3.7258 12 8 2.5570 -1.8086 -3.6128 13 7 1.5838 -0.3291 -4.9491 14 16 2.0219 -1.1838 -6.2982 15 8 1.5205 -0.4114 -7.3805 16 8 3.4169 -1.4011 -6.1376 17 6 1.1137 -2.7478 -6.1577 18 6 1.4390 -3.6362 -7.3603 19 6 0.6850 -4.9357 -7.2433 20 1 0.0381 -5.1103 -6.3963 21 6 0.8201 -5.9013 -8.2182 22 7 1.6067 -5.6880 -9.2504 23 14 -0.1150 -7.5119 -8.0736 24 1 -1.4361 -7.3786 -8.7388 25 1 0.6614 -8.5956 -8.7277 26 1 -0.3140 -7.8417 -6.6394 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6766 -1.7489 1.2493 31 1 1.6766 -0.2075 2.1393 32 1 3.9332 -1.2361 2.1388 33 1 3.9336 0.3057 1.2488 34 1 3.7157 -2.4710 0.0000 35 1 5.1695 -1.4443 -0.0002 36 1 3.9329 -1.2361 -2.1394 37 1 3.9332 0.3053 -1.2497 38 1 0.4432 0.0787 -2.4543 39 1 1.9646 0.9985 -2.5439 40 1 1.0802 0.4950 -5.0395 41 1 1.4073 -3.2574 -5.2401 42 1 0.0429 -2.5454 -6.1343 43 1 1.1456 -3.1269 -8.2782 44 1 2.5098 -3.8386 -7.3833 45 1 1.7015 -6.3672 -9.9364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776121071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:40 Heat of formation + Delta-G solvation = -153.981894 kcal Electronic energy + Delta-G solvation = -25345.363853 eV Core-core repulsion = 21681.377834 eV Total energy + Delta-G solvation = -3663.986019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54631 -38.71799 -36.68677 -35.60658 -34.44060 -33.89091 -33.32888 -32.23470 -31.17750 -28.14915 -26.20674 -25.61643 -22.93522 -21.72433 -21.55750 -20.78110 -19.93052 -19.29603 -17.83999 -17.45539 -16.52322 -15.98782 -15.34289 -15.29199 -15.05968 -14.85994 -14.69967 -14.54137 -14.28481 -13.99426 -13.44415 -13.21102 -12.77866 -12.61304 -12.51285 -12.19410 -12.01861 -11.88430 -11.78159 -11.72226 -11.69605 -11.60610 -11.18173 -11.08144 -11.02775 -10.99671 -10.84735 -10.59655 -10.51689 -10.37778 -10.34761 -10.16587 -9.82815 -9.69046 -9.17571 -8.49598 -6.11849 -4.17294 0.51949 2.12338 2.76067 3.27129 3.33316 3.36705 4.00543 4.18475 4.33244 4.37808 4.45243 4.58174 4.67797 4.76434 4.91139 4.96067 5.05470 5.12041 5.22382 5.23487 5.29102 5.34307 5.36300 5.48569 5.52891 5.57555 5.60539 5.71026 5.73270 5.81312 5.88512 5.99459 6.03650 6.06829 6.12719 6.35576 6.35993 6.46387 6.67274 7.28778 7.35450 7.52413 7.81202 8.17144 8.85659 9.47232 10.99295 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.003277 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.650021 B = 8543.118701 C = 9364.365420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.125 4.125 8 C -0.071 4.071 9 H 0.084 0.916 10 C -0.143 4.143 11 C 0.531 3.469 12 O -0.485 6.485 13 N -1.061 6.061 14 S 2.565 3.435 15 O -0.957 6.957 16 O -0.939 6.939 17 C -0.575 4.575 18 C 0.030 3.970 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.428 0.572 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.034 0.966 44 H 0.036 0.964 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 14.869 20.469 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.163 4.163 8 C -0.090 4.090 9 H 0.102 0.898 10 C -0.185 4.185 11 C 0.317 3.683 12 O -0.357 6.357 13 N -0.822 5.822 14 S 2.665 3.335 15 O -0.947 6.947 16 O -0.929 6.929 17 C -0.710 4.710 18 C -0.010 4.010 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.728 3.272 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.262 0.738 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.675 14.388 19.761 24.453 hybrid contribution -1.225 -0.693 0.203 1.422 sum -1.900 13.696 19.963 24.284 Atomic orbital electron populations 1.21947 0.95314 1.02163 1.01652 1.21162 0.95320 0.99541 0.94468 0.91131 1.21572 0.95638 1.00803 0.97044 1.21558 0.95587 1.00613 0.98010 1.21499 1.00167 0.99684 0.94193 1.21761 0.94366 1.00667 0.99469 1.21033 0.96280 1.00078 0.91573 0.89813 1.22006 1.03774 1.00548 0.92151 1.20740 0.77166 0.85564 0.84799 1.90878 1.35601 1.23134 1.86036 1.55454 1.65592 1.38157 1.23029 1.06689 0.76415 0.77818 0.72550 1.93587 1.81925 1.68990 1.50225 1.93593 1.29290 1.85953 1.84073 1.30335 1.12328 1.16611 1.11727 1.18988 0.98837 0.94356 0.88782 1.20978 1.27418 0.99567 1.07904 0.91978 1.25065 0.95378 0.98891 0.95138 1.69954 1.37224 1.35001 1.10669 0.86446 0.79661 0.82695 0.78354 1.20468 1.20973 1.19715 0.92415 0.92733 0.92365 0.91839 0.92166 0.92308 0.92230 0.91802 0.92141 0.89613 0.92549 0.87621 0.88084 0.73763 0.85063 0.86130 0.94801 0.94590 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.85 37.16 0.33 -0.61 16 2 C -0.09 -0.60 2.25 -90.62 -0.20 -0.81 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -0.81 5.20 -26.73 -0.14 -0.95 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 6 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 7 C -0.13 -1.29 4.94 -26.73 -0.13 -1.43 16 8 C -0.07 -0.64 1.36 -90.62 -0.12 -0.76 16 9 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 10 C -0.14 -1.17 4.96 -27.88 -0.14 -1.31 16 11 C 0.53 6.71 7.28 -10.99 -0.08 6.63 16 12 O -0.49 -8.07 12.07 -11.55 -0.14 -8.21 16 13 N -1.06 -13.06 5.60 31.22 0.17 -12.88 16 14 S 2.57 46.59 5.11 -107.50 -0.55 46.04 16 15 O -0.96 -19.03 18.08 -57.54 -1.04 -20.07 16 16 O -0.94 -20.59 17.04 -64.78 -1.10 -21.69 16 17 C -0.58 -11.45 5.82 37.16 0.22 -11.23 16 18 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 19 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 20 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 23 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.31 6.32 -51.93 -0.33 -0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.14 5.96 -51.93 -0.31 0.84 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 0.61 6.17 -51.92 -0.32 0.29 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.43 3.42 8.79 -34.47 -0.30 3.12 16 41 H 0.13 2.57 7.19 -51.93 -0.37 2.19 16 42 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -36.10 366.53 -10.06 -46.16 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.51 Total: 0.20 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -1.14 Total: -25.51 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.91 Total: -38.85 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -2.28 Total: -49.97 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 46.59 SS G_CDS: -0.55 Total: 46.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.10 -10.06 -46.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776121071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.821 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds