Wall clock time and date at job start Tue Mar 31 2020 12:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53002 * 109.46637 * 119.99871 * 2 1 3 5 5 C 1.52997 * 109.46817 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 300.00239 * 5 4 2 7 7 C 1.52999 * 109.47159 * 59.99536 * 6 5 4 8 8 C 1.52997 * 109.47317 * 300.00546 * 7 6 5 9 9 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 10 10 C 1.53002 * 109.46817 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.47344 * 64.99877 * 10 8 7 12 12 O 1.21278 * 119.99753 * 0.02562 * 11 10 8 13 13 N 1.34771 * 120.00023 * 179.97438 * 11 10 8 14 14 S 1.65601 * 120.00056 * 179.97438 * 13 11 10 15 15 O 1.42104 * 104.27858 * 181.07307 * 14 13 11 16 16 O 1.42094 * 104.27849 * 308.93281 * 14 13 11 17 17 C 1.81401 * 104.44597 * 65.00344 * 14 13 11 18 18 C 1.53009 * 109.47082 * 180.02562 * 17 14 13 19 19 C 1.50701 * 109.47010 * 179.97438 * 18 17 14 20 20 H 1.07995 * 119.99930 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99727 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00085 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46924 * 90.00054 * 23 21 19 25 25 H 1.48497 * 109.47326 * 209.99786 * 23 21 19 26 26 H 1.48497 * 109.46969 * 330.00438 * 23 21 19 27 27 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 29 29 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 30 30 H 1.09002 * 109.47075 * 60.00414 * 4 2 1 31 31 H 1.08993 * 109.47662 * 299.99908 * 4 2 1 32 32 H 1.09001 * 109.47289 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47153 * 60.00231 * 5 4 2 34 34 H 1.09002 * 109.46935 * 300.00125 * 6 5 4 35 35 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.46929 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46716 * 60.00455 * 7 6 5 38 38 H 1.09008 * 109.46873 * 184.99985 * 10 8 7 39 39 H 1.08997 * 109.47047 * 304.99674 * 10 8 7 40 40 H 0.97002 * 120.00482 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.47701 * 299.99895 * 17 14 13 42 42 H 1.08996 * 109.47533 * 60.00276 * 17 14 13 43 43 H 1.09001 * 109.47137 * 299.99871 * 18 17 14 44 44 H 1.08996 * 109.46777 * 59.99732 * 18 17 14 45 45 H 0.97000 * 119.99922 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0002 7 6 3.5695 -0.7223 -1.2495 8 6 2.0395 -0.7217 -1.2492 9 1 1.6758 -1.7492 -1.2490 10 6 1.5296 0.0001 -2.4982 11 6 1.9278 -0.7780 -3.7258 12 8 2.5570 -1.8086 -3.6128 13 7 1.5838 -0.3291 -4.9491 14 16 2.0219 -1.1838 -6.2982 15 8 1.5205 -0.4114 -7.3805 16 8 3.4169 -1.4011 -6.1376 17 6 1.1137 -2.7478 -6.1577 18 6 1.4390 -3.6362 -7.3603 19 6 0.6850 -4.9357 -7.2433 20 1 0.0381 -5.1103 -6.3963 21 6 0.8201 -5.9013 -8.2182 22 7 1.6067 -5.6880 -9.2504 23 14 -0.1150 -7.5119 -8.0736 24 1 -1.4361 -7.3786 -8.7388 25 1 0.6614 -8.5956 -8.7277 26 1 -0.3140 -7.8417 -6.6394 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6766 -1.7489 1.2493 31 1 1.6766 -0.2075 2.1393 32 1 3.9332 -1.2361 2.1388 33 1 3.9336 0.3057 1.2488 34 1 3.7157 -2.4710 0.0000 35 1 5.1695 -1.4443 -0.0002 36 1 3.9329 -1.2361 -2.1394 37 1 3.9332 0.3053 -1.2497 38 1 0.4432 0.0787 -2.4543 39 1 1.9646 0.9985 -2.5439 40 1 1.0802 0.4950 -5.0395 41 1 1.4073 -3.2574 -5.2401 42 1 0.0429 -2.5454 -6.1343 43 1 1.1456 -3.1269 -8.2782 44 1 2.5098 -3.8386 -7.3833 45 1 1.7015 -6.3672 -9.9364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776121071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:40 Heat of formation + Delta-G solvation = -179.465868 kcal Electronic energy + Delta-G solvation = -25346.468921 eV Core-core repulsion = 21681.377834 eV Total energy + Delta-G solvation = -3665.091087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52433 -39.49554 -38.27778 -37.22672 -35.97284 -35.57535 -33.99498 -33.19895 -32.87968 -28.86162 -27.66065 -26.80481 -23.95794 -23.47735 -22.38265 -21.55509 -20.75021 -20.49229 -19.32024 -18.71106 -18.29923 -17.37441 -16.69223 -16.56893 -16.49291 -15.91862 -15.88501 -15.36612 -15.22407 -14.92012 -14.73740 -14.49857 -13.98605 -13.87650 -13.76816 -13.38106 -13.33490 -13.25956 -12.96205 -12.92837 -12.85851 -12.63724 -12.53552 -12.32426 -12.28918 -12.23494 -11.99354 -11.83638 -11.73460 -11.66395 -11.44237 -11.24459 -11.06871 -10.78806 -10.67412 -10.64215 -8.28964 -6.43285 -0.98919 1.08822 1.38877 1.41421 1.46983 1.52733 2.35682 2.57296 3.03892 3.05187 3.32241 3.66956 3.81664 3.87063 3.97590 4.03318 4.08719 4.19850 4.29915 4.42523 4.52200 4.59568 4.65950 4.67412 4.73648 4.79001 4.85911 4.95034 5.04195 5.13622 5.20297 5.21719 5.26240 5.27875 5.34554 5.36941 5.43518 5.55619 5.58957 5.64564 5.71287 5.76022 6.01953 6.54349 6.69308 7.26760 8.83549 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.003277 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.650021 B = 8543.118701 C = 9364.365420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 H 0.086 0.914 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.127 4.127 8 C -0.071 4.071 9 H 0.061 0.939 10 C -0.135 4.135 11 C 0.526 3.474 12 O -0.528 6.528 13 N -1.038 6.038 14 S 2.598 3.402 15 O -0.974 6.974 16 O -0.981 6.981 17 C -0.579 4.579 18 C 0.023 3.977 19 C -0.542 4.542 20 H 0.074 0.926 21 C -0.003 4.003 22 N -0.933 5.933 23 Si 0.976 3.024 24 H -0.266 1.266 25 H -0.282 1.282 26 H -0.261 1.261 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.451 0.549 41 H 0.133 0.867 42 H 0.151 0.849 43 H 0.015 0.985 44 H 0.003 0.997 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 16.498 22.701 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 H 0.104 0.896 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.158 4.158 7 C -0.164 4.164 8 C -0.090 4.090 9 H 0.080 0.920 10 C -0.176 4.176 11 C 0.315 3.685 12 O -0.402 6.402 13 N -0.806 5.806 14 S 2.697 3.303 15 O -0.964 6.964 16 O -0.971 6.971 17 C -0.712 4.712 18 C -0.016 4.016 19 C -0.580 4.580 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.572 5.572 23 Si 0.799 3.201 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.185 1.185 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.291 0.709 41 H 0.151 0.849 42 H 0.169 0.831 43 H 0.033 0.967 44 H 0.022 0.978 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.849 16.037 21.986 27.362 hybrid contribution -0.507 -1.140 -0.430 1.319 sum -3.356 14.897 21.556 26.417 Atomic orbital electron populations 1.21959 0.94323 1.01928 1.02884 1.21121 0.96044 0.99784 0.92807 0.89557 1.21596 0.95106 1.00512 0.97958 1.21527 0.96085 1.00829 0.96866 1.21504 0.99988 0.99086 0.95190 1.21737 0.95695 1.00940 0.98077 1.21027 0.95156 0.99555 0.93296 0.92015 1.22176 1.06038 1.00816 0.88553 1.21740 0.75942 0.85261 0.85565 1.90887 1.37544 1.25420 1.86302 1.54885 1.65776 1.38534 1.21367 1.05353 0.75007 0.76926 0.73004 1.93557 1.81919 1.68850 1.52098 1.93542 1.31915 1.86485 1.85137 1.30235 1.14808 1.17305 1.08809 1.18822 0.96703 0.95331 0.90776 1.21476 1.27670 1.00593 1.08310 0.90815 1.26129 0.96290 1.03110 0.94635 1.70096 1.38922 1.36525 1.11681 0.85281 0.78378 0.77469 0.78943 1.19120 1.20712 1.18469 0.93410 0.91770 0.90913 0.92959 0.90653 0.91895 0.91217 0.93460 0.92538 0.93298 0.91110 0.84134 0.84793 0.70876 0.84895 0.83095 0.96703 0.97850 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.85 71.98 0.64 -0.69 16 2 C -0.08 -0.86 2.25 -10.79 -0.02 -0.88 16 3 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.11 -1.39 5.20 30.59 0.16 -1.23 16 5 C -0.12 -1.57 5.92 30.60 0.18 -1.39 16 6 C -0.12 -2.26 5.92 30.60 0.18 -2.08 16 7 C -0.13 -2.56 4.94 30.59 0.15 -2.41 16 8 C -0.07 -1.15 1.36 -10.79 -0.01 -1.17 16 9 H 0.06 1.28 7.96 -2.39 -0.02 1.26 16 10 C -0.13 -1.73 4.96 29.85 0.15 -1.59 16 11 C 0.53 12.47 7.28 87.66 0.64 13.11 16 12 O -0.53 -17.79 12.07 13.34 0.16 -17.63 16 13 N -1.04 -23.56 5.60 -173.54 -0.97 -24.54 16 14 S 2.60 94.66 5.11 -56.49 -0.29 94.37 16 15 O -0.97 -38.42 18.08 -127.65 -2.31 -40.73 16 16 O -0.98 -44.35 17.04 -120.72 -2.06 -46.40 16 17 C -0.58 -23.28 5.82 71.99 0.42 -22.86 16 18 C 0.02 1.23 4.98 29.85 0.15 1.37 16 19 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 20 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 21 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 22 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 23 Si 0.98 44.12 29.54 68.60 2.03 46.14 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.42 6.32 -2.39 -0.02 0.40 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 1.36 5.96 -2.39 -0.01 1.34 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.14 0.91 6.17 -2.38 -0.01 0.89 16 39 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.45 5.73 8.79 -96.75 -0.85 4.88 16 41 H 0.13 5.30 7.19 -2.39 -0.02 5.28 16 42 H 0.15 5.01 8.14 -2.39 -0.02 4.99 16 43 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -82.25 366.53 0.29 -81.96 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.12 Total: 14.40 kcal Atomic # 6 Polarization: -53.57 SS G_CDS: 3.32 Total: -50.25 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -0.69 Total: -81.86 kcal Atomic # 8 Polarization: -100.56 SS G_CDS: -4.20 Total: -104.76 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 94.66 SS G_CDS: -0.29 Total: 94.37 kcal Total: -82.25 0.29 -81.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776121071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.510 kcal (2) G-P(sol) polarization free energy of solvation -82.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds