Wall clock time and date at job start Tue Mar 31 2020 12:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46910 * 2 1 4 4 C 1.52995 * 109.47299 * 119.99986 * 2 1 3 5 5 C 1.52998 * 109.47299 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47225 * 300.00259 * 5 4 2 7 7 C 1.52995 * 109.47193 * 59.99676 * 6 5 4 8 8 H 1.09002 * 109.47128 * 60.00132 * 7 6 5 9 9 C 1.53002 * 109.47193 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.47303 * 295.00533 * 9 7 6 11 11 O 1.21287 * 119.99613 * 359.97438 * 10 9 7 12 12 N 1.34775 * 119.99913 * 180.02562 * 10 9 7 13 13 S 1.65600 * 119.99844 * 179.97438 * 12 10 9 14 14 O 1.42098 * 104.27576 * 308.92411 * 13 12 10 15 15 O 1.42102 * 104.27841 * 181.06538 * 13 12 10 16 16 C 1.81404 * 104.45074 * 64.99364 * 13 12 10 17 17 C 1.53000 * 109.46946 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00093 * 22 20 18 24 24 H 1.48505 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00069 * 22 20 18 26 26 C 1.52998 * 109.47299 * 300.00279 * 7 6 5 27 27 H 1.08998 * 109.47474 * 299.99933 * 1 2 3 28 28 H 1.09006 * 109.47207 * 60.00181 * 1 2 3 29 29 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47128 * 60.00147 * 4 2 1 31 31 H 1.08998 * 109.47384 * 300.00151 * 4 2 1 32 32 H 1.08998 * 109.46914 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46910 * 60.00013 * 5 4 2 34 34 H 1.09002 * 109.46975 * 299.99714 * 6 5 4 35 35 H 1.08995 * 109.47054 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.47075 * 174.99689 * 9 7 6 37 37 H 1.09000 * 109.46478 * 55.00299 * 9 7 6 38 38 H 0.96993 * 119.99975 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47124 * 60.00022 * 16 13 12 40 40 H 1.09001 * 109.46975 * 300.00144 * 16 13 12 41 41 H 1.09001 * 109.47194 * 299.99756 * 17 16 13 42 42 H 1.08992 * 109.47399 * 59.99928 * 17 16 13 43 43 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47582 * 179.97438 * 26 7 6 45 45 H 1.09002 * 109.47361 * 299.99699 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4433 -0.0004 7 6 3.5695 -0.7221 -1.2496 8 1 3.9331 0.3054 -1.2498 9 6 4.0795 -1.4433 -2.4989 10 6 5.5814 -1.3370 -2.5623 11 8 6.1844 -0.7425 -1.6941 12 7 6.2543 -1.9017 -3.5845 13 16 7.9046 -1.7844 -3.6545 14 8 8.1644 -0.3967 -3.4931 15 8 8.2534 -2.4603 -4.8548 16 6 8.4863 -2.7132 -2.2089 17 6 10.0152 -2.6779 -2.1614 18 6 10.4983 -3.4500 -0.9608 19 1 9.7862 -3.9186 -0.2978 20 6 11.8496 -3.5581 -0.7089 21 7 12.7168 -2.9879 -1.5166 22 14 12.4486 -4.5146 0.7797 23 1 11.9881 -5.9231 0.6810 24 1 13.9325 -4.4815 0.8250 25 1 11.9012 -3.9003 2.0158 26 6 2.0395 -0.7216 -1.2493 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6767 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9333 -1.2352 2.1391 33 1 3.9337 0.3058 1.2486 34 1 3.7158 -2.4709 -0.0002 35 1 5.1694 -1.4441 -0.0004 36 1 3.6448 -0.9839 -3.3865 37 1 3.7911 -2.4936 -2.4552 38 1 5.7720 -2.3769 -4.2790 39 1 8.1484 -3.7470 -2.2813 40 1 8.0844 -2.2623 -1.3016 41 1 10.4174 -3.1286 -3.0688 42 1 10.3526 -1.6441 -2.0889 43 1 13.6675 -3.0643 -1.3396 44 1 1.6761 -0.2074 -2.1390 45 1 1.6757 -1.7491 -1.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776122048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:43 Heat of formation + Delta-G solvation = -156.461579 kcal Electronic energy + Delta-G solvation = -25169.686207 eV Core-core repulsion = 21505.592661 eV Total energy + Delta-G solvation = -3664.093546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47063 -38.70448 -36.68916 -35.60648 -34.43704 -33.89284 -33.65146 -31.96532 -31.17898 -27.88665 -26.53526 -25.61671 -22.70377 -21.99944 -21.62750 -20.52408 -19.98055 -19.27193 -17.81170 -17.44514 -16.53415 -15.97924 -15.47791 -15.25345 -15.19900 -14.87155 -14.57344 -14.46615 -14.28951 -13.87489 -13.42865 -13.40493 -12.68342 -12.59496 -12.54515 -12.31518 -12.10839 -11.84482 -11.78863 -11.71681 -11.60717 -11.55333 -11.16557 -11.06598 -11.01474 -10.99452 -10.87773 -10.60147 -10.56650 -10.40621 -10.33272 -10.17694 -9.88703 -9.68048 -9.18115 -8.49238 -6.11653 -4.17223 0.51930 2.12049 2.75924 3.28555 3.33044 3.35152 4.00312 4.18719 4.33578 4.37817 4.44553 4.57500 4.67940 4.78118 4.87610 4.97628 5.04951 5.17507 5.20016 5.23564 5.30367 5.36197 5.41289 5.44178 5.51428 5.58315 5.60810 5.61797 5.72851 5.76010 5.86885 6.02414 6.04073 6.07532 6.15379 6.33712 6.35508 6.46327 6.67133 7.28777 7.35584 7.52029 7.81086 8.17184 8.85502 9.47247 10.99461 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.003295 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.202673 B = 8495.952514 C = 9993.756416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.077 4.077 8 H 0.082 0.918 9 C -0.140 4.140 10 C 0.531 3.469 11 O -0.485 6.485 12 N -1.061 6.061 13 S 2.565 3.435 14 O -0.939 6.939 15 O -0.957 6.957 16 C -0.575 4.575 17 C 0.030 3.970 18 C -0.520 4.520 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.901 3.099 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.108 4.108 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.428 0.572 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.266 0.734 44 H 0.062 0.938 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.442 2.302 0.082 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.096 4.096 8 H 0.101 0.899 9 C -0.181 4.181 10 C 0.317 3.683 11 O -0.356 6.356 12 N -0.822 5.822 13 S 2.665 3.335 14 O -0.929 6.929 15 O -0.947 6.947 16 C -0.710 4.710 17 C -0.009 4.009 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.728 3.272 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.262 0.738 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.373 3.282 -0.007 24.593 hybrid contribution -0.022 -1.185 0.794 1.427 sum -24.396 2.097 0.787 24.498 Atomic orbital electron populations 1.21834 0.95427 1.01666 1.01520 1.21124 0.95117 0.99841 0.95026 0.91154 1.21615 0.95973 1.00408 0.97182 1.21495 0.94971 1.01159 0.97949 1.21758 1.02578 0.98404 0.93470 1.21004 0.94859 1.00662 0.93034 0.89920 1.21908 0.90714 1.04063 1.01432 1.20736 0.91694 0.76093 0.79759 1.90883 1.70294 1.38030 1.36422 1.55453 1.30682 1.63051 1.33033 1.06688 0.72371 0.76469 0.77931 1.93595 1.81690 1.30481 1.87148 1.93587 1.80455 1.76716 1.43965 1.30334 1.11642 1.12312 1.16690 1.18979 0.82690 0.99459 0.99784 1.20940 0.91853 1.33622 1.09511 0.92025 1.25062 0.96780 0.95673 0.96928 1.69941 1.02199 1.43488 1.37244 0.86509 0.77657 0.80273 0.82716 1.20079 1.21059 1.20010 1.21647 0.94448 1.00810 0.97647 0.92821 0.92813 0.92792 0.92148 0.92321 0.92005 0.91844 0.92419 0.89781 0.88045 0.87940 0.73753 0.86122 0.85090 0.94809 0.94605 0.92445 0.91940 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.67 2.72 -90.62 -0.25 -0.91 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.88 5.20 -26.73 -0.14 -1.02 16 5 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 6 C -0.12 -1.27 4.94 -26.73 -0.13 -1.40 16 7 C -0.08 -0.68 1.84 -90.62 -0.17 -0.85 16 8 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 9 C -0.14 -1.11 5.18 -27.88 -0.14 -1.26 16 10 C 0.53 6.67 7.28 -10.99 -0.08 6.59 16 11 O -0.49 -8.05 12.07 -11.59 -0.14 -8.19 16 12 N -1.06 -12.99 5.60 31.22 0.17 -12.81 16 13 S 2.57 46.46 5.11 -107.50 -0.55 45.91 16 14 O -0.94 -20.62 17.04 -64.79 -1.10 -21.72 16 15 O -0.96 -18.99 18.08 -57.54 -1.04 -20.03 16 16 C -0.58 -11.39 5.82 37.16 0.22 -11.17 16 17 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 18 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 22 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.11 -0.74 4.48 -26.73 -0.12 -0.86 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.43 3.40 8.79 -34.47 -0.30 3.09 16 39 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 40 H 0.13 2.54 7.19 -51.92 -0.37 2.17 16 41 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -36.16 370.39 -10.24 -46.40 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.70 Total: -0.18 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -1.18 Total: -25.38 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.91 Total: -38.79 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -2.28 Total: -49.94 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 46.46 SS G_CDS: -0.55 Total: 45.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.16 -10.24 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.060 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds